BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0124.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_293142.1| cyclic nucleotide-binding [Ralstonia eutropha J... 300 2e-79 ref|YP_004687720.1| cyclic nucleotide-binding protein [Cupriavid... 299 2e-79 ref|YP_001795991.1| putative transcriptional regulator; Crp fami... 297 6e-79 ref|YP_547537.1| Crp/FNR family transcriptional regulator [Polar... 275 4e-72 ref|ZP_02381102.1| putative transcriptional regulator with cAMP ... 223 1e-56 >ref|YP_293142.1| cyclic nucleotide-binding [Ralstonia eutropha JMP134] gb|AAZ65285.1| Cyclic nucleotide-binding protein [Ralstonia eutropha JMP134] Length = 228 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 136/225 (60%), Positives = 173/225 (76%) Query: 3 LSPELIAFLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIK 62 + L +F S W LT+ + R+ + FEK +G RG PADHW G++EG++K Sbjct: 1 MRATLASFFENSAWFDRLTDQEKARVMTDSFEKHLTAGGTACHRGAPADHWLGVVEGIVK 60 Query: 63 VDTVSQDGRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQS 122 VDT S GR+ TFA VP GAWFGEGAVLKNEPR YS+VA++DS++A+VPK TF WLL Q+ Sbjct: 61 VDTASACGRAITFASVPAGAWFGEGAVLKNEPRQYSVVALKDSRIAYVPKATFLWLLEQN 120 Query: 123 TSFSRFVIDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEE 182 +FSR+VIDQLN RCGYYV L+ N RL EA+ RVAFCL+ELF+ QLYPST++ L LSQEE Sbjct: 121 HTFSRYVIDQLNARCGYYVGLVHNLRLHEAAGRVAFCLTELFHRQLYPSTDRTLGLSQEE 180 Query: 183 IGRLSGLSRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFAH 227 IGRL+GLSRQNTNRALRELAD ++++EYG++ ++DL LR+FAH Sbjct: 181 IGRLTGLSRQNTNRALRELADAGMVAMEYGAIHVIDLEGLRQFAH 225 >ref|YP_004687720.1| cyclic nucleotide-binding protein [Cupriavidus necator N-1] gb|AEI81682.1| cyclic nucleotide-binding protein [Cupriavidus necator N-1] Length = 252 Score = 299 bits (766), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 136/218 (62%), Positives = 175/218 (80%) Query: 10 FLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDTVSQD 69 FL S W A LT+++ R++ FE+ A+G + RG PADHW G+IEG+IKVDT S Sbjct: 32 FLQASSWFAILTDEEKARVKIETFERYCAAGGMACHRGDPADHWLGVIEGIIKVDTASAC 91 Query: 70 GRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSFSRFV 129 GR+ TFAGVP G+WFGEGAVLK+E RPYS+VAI+DS++A+VP++TF WLL ++ FSR+V Sbjct: 92 GRAVTFAGVPAGSWFGEGAVLKSEMRPYSVVAIKDSRIAYVPRETFLWLLGRNHGFSRYV 151 Query: 130 IDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGRLSGL 189 IDQLN RCGYYV L+ N RL EA+ARVAFC++ELF+ QLYP+TE+ L LSQEE+GRLSGL Sbjct: 152 IDQLNARCGYYVGLVHNFRLHEAAARVAFCVAELFHRQLYPATERTLALSQEELGRLSGL 211 Query: 190 SRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFAH 227 SRQNTNRALRELA ++ +EYG++V++DL LR +AH Sbjct: 212 SRQNTNRALRELAKAGMIEMEYGAIVVIDLDGLRRYAH 249 >ref|YP_001795991.1| putative transcriptional regulator; Crp family [Cupriavidus taiwanensis] emb|CAP63782.1| putative transcriptional regulator; Crp family [Cupriavidus taiwanensis LMG 19424] Length = 228 Score = 297 bits (761), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 173/225 (76%) Query: 3 LSPELIAFLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIK 62 + L +F S W LT+ + R+ + FEK +G RG PADHW G++EG++K Sbjct: 1 MRASLASFFGNSAWFDRLTDQEKARVMTDSFEKHLTAGGTACHRGAPADHWLGVVEGIVK 60 Query: 63 VDTVSQDGRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQS 122 VDT S GR+ TFA +P GAWFGEGAVLK+EPR YS+VA++DS++A+VPK TF WLL Q+ Sbjct: 61 VDTASACGRAITFASMPAGAWFGEGAVLKDEPRQYSVVALKDSRIAYVPKATFLWLLEQN 120 Query: 123 TSFSRFVIDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEE 182 +FSR+VIDQLN RCGYYV L+ N RL EA+ RVAFCL+ELF+ QLYPST++ L LSQEE Sbjct: 121 HTFSRYVIDQLNARCGYYVGLVHNLRLHEAAGRVAFCLTELFHRQLYPSTDRTLALSQEE 180 Query: 183 IGRLSGLSRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFAH 227 IGRL+GLSRQNTNRALRELAD ++++EYG++ ++DL LR+FAH Sbjct: 181 IGRLTGLSRQNTNRALRELADAGMVAMEYGAIQVIDLEGLRQFAH 225 >ref|YP_547537.1| Crp/FNR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE42639.1| transcriptional regulator, Crp/Fnr family [Polaromonas sp. JS666] Length = 234 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 126/221 (57%), Positives = 170/221 (76%) Query: 6 ELIAFLNKSRWPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDT 65 +L+ FL S W L++DQ +R+ + ++F +G I R +P++HW +++G++KVDT Sbjct: 11 KLLKFLASSPWREGLSQDQFDRVCGDAVTRTFTAGATICLRESPSEHWLAVVDGLVKVDT 70 Query: 66 VSQDGRSTTFAGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSF 125 VS DGR+TTFAGVPGGAWFGEGAVLK EPRPY++VAIRDS +AFVP+ TF WLL S SF Sbjct: 71 VSADGRATTFAGVPGGAWFGEGAVLKGEPRPYAVVAIRDSTVAFVPRATFLWLLDNSHSF 130 Query: 126 SRFVIDQLNWRCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGR 185 SR++IDQLN R GYYVAL+E RL + + RVA+CL+ELFNPQLYP+T+ + +SQEEIGR Sbjct: 131 SRWLIDQLNARLGYYVALVEGLRLGDVNTRVAYCLAELFNPQLYPNTQLRIDISQEEIGR 190 Query: 186 LSGLSRQNTNRALRELADMKLLSVEYGSVVILDLSRLREFA 226 L+G+ RQ RAL EL + L+ V+YGS+ ++DL L++FA Sbjct: 191 LTGMVRQTAYRALHELENAGLIRVQYGSIEVVDLEGLKKFA 231 >ref|ZP_02381102.1| putative transcriptional regulator with cAMP binding domain belongs to HTH Crp family protein [Burkholderia ubonensis Bu] Length = 238 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 103/211 (48%), Positives = 147/211 (69%) Query: 16 WPAELTEDQMERLRQNIFEKSFASGTIIYPRGTPADHWFGLIEGMIKVDTVSQDGRSTTF 75 W EL +D+ ER I EK+FA G I P+ T + W G++ G+IK+ TVS +GRS TF Sbjct: 27 WSIELPDDEAERACAGIVEKTFARGACICPKNTVLESWTGVVTGLIKIGTVSPEGRSVTF 86 Query: 76 AGVPGGAWFGEGAVLKNEPRPYSIVAIRDSKLAFVPKQTFEWLLSQSTSFSRFVIDQLNW 135 GVP G WFGEG VLKNEPR Y IVA+RD+++AF+ + TF WL+ S +F+RF++ QLN Sbjct: 87 TGVPAGGWFGEGTVLKNEPRRYDIVALRDTRMAFMERPTFMWLVEHSVAFNRFLVRQLNE 146 Query: 136 RCGYYVALIENRRLREASARVAFCLSELFNPQLYPSTEQALPLSQEEIGRLSGLSRQNTN 195 R +++AL+E RL +A+ R+A CL+ LFNP LYP L ++QEE+G LSG++RQ N Sbjct: 147 RLSHFMALLEYDRLLDATPRLARCLASLFNPVLYPGGGDHLDITQEELGLLSGITRQVAN 206 Query: 196 RALRELADMKLLSVEYGSVVILDLSRLREFA 226 ++L+ L L+ +EYG + ++DL+RLR + Sbjct: 207 QSLKTLQKEGLVRLEYGGITVVDLARLRCYG 237