BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0120.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777381.1| 3-oxoadipate CoA-transferase subunit A [Herb...   181   4e-44
ref|ZP_03269289.1| 3-oxoacid CoA-transferase, A subunit [Burkhol...   166   8e-40
ref|ZP_06839790.1| 3-oxoacid CoA-transferase, A subunit [Burkhol...   164   3e-39
ref|YP_004230758.1| 3-oxoacid CoA-transferase subunit A [Burkhol...   163   7e-39
ref|ZP_02884232.1| 3-oxoacid CoA-transferase, A subunit [Burkhol...   163   8e-39

>ref|YP_003777381.1| 3-oxoadipate CoA-transferase subunit A [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ65473.1| 3-oxoadipate CoA-transferase subunit A protein [Herbaspirillum
           seropedicae SmR1]
          Length = 224

 Score =  181 bits (458), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 88/91 (96%)

Query: 1   MLAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT 60
           MLAEGKETR I+GRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT
Sbjct: 129 MLAEGKETREINGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCT 188

Query: 61  IAQVSEVVALGELDPEVIVTPGIFVQRVVQT 91
           IAQVSEVV LG+LDPE IVTPGIFVQR+VQT
Sbjct: 189 IAQVSEVVELGQLDPENIVTPGIFVQRIVQT 219


>ref|ZP_03269289.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia sp. H160]
 gb|EDZ99114.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia sp. H160]
          Length = 235

 Score =  166 bits (421), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 85/96 (88%)

Query: 2   LAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCTI 61
           LAEGKETRLIDGRHYVLESP+HADFALIKA +GDRWGNL+YRKTARNFGPIMA AAK  I
Sbjct: 130 LAEGKETRLIDGRHYVLESPLHADFALIKAYKGDRWGNLIYRKTARNFGPIMASAAKTAI 189

Query: 62  AQVSEVVALGELDPEVIVTPGIFVQRVVQTNTQGNL 97
            QVSEVV+LG LDPEVIVTPGIFVQRV++     +L
Sbjct: 190 VQVSEVVSLGALDPEVIVTPGIFVQRVIEVPQAAHL 225


>ref|ZP_06839790.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia sp. Ch1-1]
 gb|EFG72620.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia sp. Ch1-1]
          Length = 233

 Score =  164 bits (416), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 76/89 (85%), Positives = 82/89 (92%)

Query: 2   LAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCTI 61
           LAEGKETRLIDGRHYVLESP+HADFALIKA +GDRWGNL+YRKTARNFGPIMA AAK  I
Sbjct: 130 LAEGKETRLIDGRHYVLESPLHADFALIKAYKGDRWGNLIYRKTARNFGPIMASAAKTAI 189

Query: 62  AQVSEVVALGELDPEVIVTPGIFVQRVVQ 90
            QVSEVV LG LDPEVI+TPGIFVQRV++
Sbjct: 190 VQVSEVVPLGALDPEVIITPGIFVQRVIE 218


>ref|YP_004230758.1| 3-oxoacid CoA-transferase subunit A [Burkholderia sp. CCGE1001]
 gb|ADX57698.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia sp. CCGE1001]
          Length = 235

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 81/89 (91%)

Query: 2   LAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCTI 61
           LAEGKETRLIDGRHYVLESP+HADFALIKA +GDRWGNLVYRKTARNFGPIMA AAK  I
Sbjct: 130 LAEGKETRLIDGRHYVLESPLHADFALIKAYKGDRWGNLVYRKTARNFGPIMASAAKTAI 189

Query: 62  AQVSEVVALGELDPEVIVTPGIFVQRVVQ 90
            QVSEVV LG LDPE IVTPGIFVQRV++
Sbjct: 190 VQVSEVVPLGALDPENIVTPGIFVQRVIE 218


>ref|ZP_02884232.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia graminis C4D1M]
 gb|EDT10236.1| 3-oxoacid CoA-transferase, A subunit [Burkholderia graminis C4D1M]
          Length = 235

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/89 (86%), Positives = 81/89 (91%)

Query: 2   LAEGKETRLIDGRHYVLESPIHADFALIKALRGDRWGNLVYRKTARNFGPIMAMAAKCTI 61
           LAEGKETRLIDGRHYVLESP+HADFALIKA +GDRWGNLVYRKTARNFGPIMA AAK  I
Sbjct: 130 LAEGKETRLIDGRHYVLESPLHADFALIKAYKGDRWGNLVYRKTARNFGPIMASAAKTAI 189

Query: 62  AQVSEVVALGELDPEVIVTPGIFVQRVVQ 90
            QVSEVV LG LDPE IVTPGIFVQRV++
Sbjct: 190 VQVSEVVPLGALDPENIVTPGIFVQRVIE 218