BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0119.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001859944.1| beta-ketoadipyl CoA thiolase [Burkholderia p... 298 6e-79 ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum... 293 1e-77 ref|YP_001900023.1| beta-ketoadipyl CoA thiolase [Ralstonia pick... 293 2e-77 ref|YP_004231717.1| beta-ketoadipyl CoA thiolase [Burkholderia s... 293 3e-77 ref|YP_003909372.1| beta-ketoadipyl CoA thiolase [Burkholderia s... 292 3e-77 >ref|YP_001859944.1| beta-ketoadipyl CoA thiolase [Burkholderia phymatum STM815] gb|ACC72898.1| beta-ketoadipyl CoA thiolase [Burkholderia phymatum STM815] Length = 400 Score = 298 bits (763), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 143/176 (81%), Positives = 158/176 (89%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P+DVPG+T+NRLCGSGMDA+GIAARAIKSGEA LMIAGGVESM+RAPFVMGKA SAFSR Sbjct: 78 PKDVPGSTVNRLCGSGMDAVGIAARAIKSGEAGLMIAGGVESMSRAPFVMGKATSAFSRQ 137 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 A IYDTTIGWRF+NPLMK YG D+MPETGENVA DY ISRADQD FA+RSQ KAA AQQ Sbjct: 138 ADIYDTTIGWRFVNPLMKQLYGVDSMPETGENVATDYNISRADQDAFALRSQQKAARAQQ 197 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLKPIVRPDGSVTAGNAS 238 +G LAQEIV V IPQKKG+AI V++DEHPR TS+EALAKLK +VRPDG+VTAGNAS Sbjct: 198 DGTLAQEIVSVTIPQKKGDAIVVSRDEHPRETSLEALAKLKGVVRPDGTVTAGNAS 253 >ref|YP_003777379.1| beta-ketoadipyl-CoA thiolase [Herbaspirillum seropedicae SmR1] gb|ADJ65471.1| beta-ketoadipyl-CoA thiolase protein [Herbaspirillum seropedicae SmR1] Length = 400 Score = 293 bits (751), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 150/176 (85%), Positives = 163/176 (92%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P++VPG+TINRLCGSGMDA+G AARAIKSGE QLMIAGGVESMTRAPFVMGKADSAFSR Sbjct: 78 PQEVPGSTINRLCGSGMDALGTAARAIKSGETQLMIAGGVESMTRAPFVMGKADSAFSRQ 137 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 AAI DTTIGWRF+N LMK +YG DAMPET ENVA D+K+SRADQD+FAVRSQAKAAAAQ Sbjct: 138 AAIQDTTIGWRFVNALMKQKYGVDAMPETAENVAVDFKVSRADQDQFAVRSQAKAAAAQA 197 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLKPIVRPDGSVTAGNAS 238 NG LAQEIVPVVIPQKKG+ ITVTQDEHPRATSMEALA+LK +V+PDGSVTAGNAS Sbjct: 198 NGTLAQEIVPVVIPQKKGDPITVTQDEHPRATSMEALARLKGVVKPDGSVTAGNAS 253 >ref|YP_001900023.1| beta-ketoadipyl CoA thiolase [Ralstonia pickettii 12J] ref|ZP_07676421.1| beta-ketoadipyl CoA thiolase [Ralstonia sp. 5_7_47FAA] gb|ACD27591.1| beta-ketoadipyl CoA thiolase [Ralstonia pickettii 12J] gb|EFP64993.1| beta-ketoadipyl CoA thiolase [Ralstonia sp. 5_7_47FAA] Length = 400 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/178 (79%), Positives = 158/178 (88%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P VPG+TINRLCGSGMDA G AARAI+SGE LMIAGGVESM+RAPFVMGKA SAFSR+ Sbjct: 78 PDSVPGSTINRLCGSGMDATGTAARAIRSGETALMIAGGVESMSRAPFVMGKAASAFSRD 137 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 AAIYDTTIGWRFINPLMKAQYG D+MPET ENVA DYK++R DQD+FA+RSQA AA AQ+ Sbjct: 138 AAIYDTTIGWRFINPLMKAQYGVDSMPETAENVATDYKVNREDQDRFALRSQASAARAQE 197 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLKPIVRPDGSVTAGNASIV 240 +G LAQEI PV IPQ+KG+AI V +DEHPRATSMEALAKLK +VRPDG+VTAGNAS V Sbjct: 198 DGTLAQEITPVTIPQRKGDAIVVDRDEHPRATSMEALAKLKGVVRPDGTVTAGNASGV 255 >ref|YP_004231717.1| beta-ketoadipyl CoA thiolase [Burkholderia sp. CCGE1001] gb|ADX58657.1| beta-ketoadipyl CoA thiolase [Burkholderia sp. CCGE1001] Length = 400 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 141/176 (80%), Positives = 157/176 (89%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P+ VPG+T+NRLCGSGMDA+GIAARAIKSGEA LM+AGGVESM+RAPFVMGKA SAFSR Sbjct: 78 PQAVPGSTVNRLCGSGMDAVGIAARAIKSGEAALMVAGGVESMSRAPFVMGKATSAFSRQ 137 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 A IYDTTIGWRF+NPLMK YG D+MPETGENVA DYKISRADQD FA+RSQ KAA AQ+ Sbjct: 138 ADIYDTTIGWRFVNPLMKQMYGVDSMPETGENVATDYKISRADQDAFALRSQQKAARAQK 197 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLKPIVRPDGSVTAGNAS 238 +G LAQEIV V I QKKG+ ITV+QDEHPR TS+EALAKLK +VRPDG+VTAGNAS Sbjct: 198 DGTLAQEIVGVTIAQKKGDPITVSQDEHPRETSLEALAKLKGVVRPDGTVTAGNAS 253 >ref|YP_003909372.1| beta-ketoadipyl CoA thiolase [Burkholderia sp. CCGE1003] gb|ADN60081.1| beta-ketoadipyl CoA thiolase [Burkholderia sp. CCGE1003] Length = 400 Score = 292 bits (748), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 141/176 (80%), Positives = 157/176 (89%) Query: 63 PRDVPGATINRLCGSGMDAIGIAARAIKSGEAQLMIAGGVESMTRAPFVMGKADSAFSRN 122 P+ VPG+T+NRLCGSGMDA+GIAARAIKSGEA LM+AGGVESM+RAPFVMGKA SAFSR Sbjct: 78 PQGVPGSTVNRLCGSGMDAVGIAARAIKSGEAALMVAGGVESMSRAPFVMGKAASAFSRQ 137 Query: 123 AAIYDTTIGWRFINPLMKAQYGADAMPETGENVADDYKISRADQDKFAVRSQAKAAAAQQ 182 A IYDTTIGWRF+NPLMK YG D+MPETGENVA DYKISRADQD FA+RSQ KAA AQ+ Sbjct: 138 ADIYDTTIGWRFVNPLMKQMYGVDSMPETGENVATDYKISRADQDAFALRSQQKAARAQK 197 Query: 183 NGILAQEIVPVVIPQKKGEAITVTQDEHPRATSMEALAKLKPIVRPDGSVTAGNAS 238 +G LAQEIV V I QKKG+ ITV+QDEHPR TS+EALAKLK +VRPDG+VTAGNAS Sbjct: 198 DGTLAQEIVGVTIAQKKGDPITVSQDEHPRETSLEALAKLKGVVRPDGTVTAGNAS 253