BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0111.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABK64072.1| putative transcriptional activator araC family [J... 336 3e-90 gb|AAZ39197.1| putative transcriptional regulator [Janthinobacte... 335 7e-90 ref|ZP_03266773.1| transcriptional regulator, AraC family [Burkh... 297 1e-78 ref|YP_003608146.1| AraC family transcriptional regulator [Burkh... 295 8e-78 ref|YP_004156751.1| AraC family transcriptional regulator [Vario... 292 5e-77 >gb|ABK64072.1| putative transcriptional activator araC family [Janthinobacterium lividum] Length = 352 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 163/313 (52%), Positives = 221/313 (70%), Gaps = 1/313 (0%) Query: 4 FTHHHFSVSQQPIMLQAQAWSERVSGLLDTPMSRTQRQQSFAGEMDSYVFKDMIYLDCRT 63 T HFSV+ + LQ AW + + LD + R Q F E+D+Y+ DM YLD RT Sbjct: 33 LTRQHFSVASEHKELQLLAWRDYLGRFLDLQVRRQQLSNGFHAELDTYLLPDMAYLDSRT 92 Query: 64 DPLAQSRTLAKISCDNVRDFVFHVAVEGVMETLTDSRRERKSTQFVPGILALDMGQPMRM 123 D + Q R+ +IS D++RDFVFH+AV+G++ET T +R K+ Q+ PGILALDM QPM M Sbjct: 93 DAVTQLRSNQRISTDSMRDFVFHIAVQGIIETST-ARASAKALQYTPGILALDMNQPMSM 151 Query: 124 LRPTYAHVLAFFLPRAMVEAEIADADALHGQVLAYTSPLTRLLLAHLVALSRDLRGMSAT 183 RPT AHVLAFFLPRA V A + DA+A+HG+++ YT+PLTR+LL +L L + L + A Sbjct: 152 ARPTRAHVLAFFLPRAAVSAHLPDAEAIHGRIVGYTTPLTRMLLGYLKILCQRLPSLPAD 211 Query: 184 AAEEAIRVCVDLLLAAFGKQQRLTSSARAAAQSVLRSQIQRHVQSRLYSKDLTPENVLRA 243 E+ IR C L++AAF KQQRL RA A++ L+ QI+ ++Q+ L+ + LTP+ V+RA Sbjct: 212 QQEQTIRTCARLIIAAFAKQQRLEEHGRAVARAALQGQIEHYIQANLHEEHLTPDGVMRA 271 Query: 244 FDLSRPTLYRMFENEGGLGTYIRNFRLREAAEELVSMRRTAVMEIAYGLGFGSASDFTRA 303 F ++R T+YR+FE++GGL YIR+ RLR+AA EL SMR AV +I GLGF SASDF+RA Sbjct: 272 FPVARSTIYRLFESQGGLAAYIRHCRLRDAARELTSMRHLAVTQIGLGLGFNSASDFSRA 331 Query: 304 FRRAYGMTPQDFR 316 F RAYGM+P+D+R Sbjct: 332 FSRAYGMSPRDYR 344 >gb|AAZ39197.1| putative transcriptional regulator [Janthinobacterium lividum] Length = 347 Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 163/313 (52%), Positives = 221/313 (70%), Gaps = 1/313 (0%) Query: 4 FTHHHFSVSQQPIMLQAQAWSERVSGLLDTPMSRTQRQQSFAGEMDSYVFKDMIYLDCRT 63 T HFSV+ + LQ AW + + LD + R Q F E+D+Y+ DM YLD RT Sbjct: 21 LTRQHFSVASEHKELQLLAWRDYLGRFLDLQVRRQQLDNGFHAELDTYLLPDMAYLDSRT 80 Query: 64 DPLAQSRTLAKISCDNVRDFVFHVAVEGVMETLTDSRRERKSTQFVPGILALDMGQPMRM 123 D + Q R+ +IS D++RDFVFH+AV+G++ET T +R K+ Q+ PGILALDM QPM M Sbjct: 81 DAVTQLRSNQRISTDSMRDFVFHIAVQGIIETST-ARPSAKAQQYTPGILALDMNQPMSM 139 Query: 124 LRPTYAHVLAFFLPRAMVEAEIADADALHGQVLAYTSPLTRLLLAHLVALSRDLRGMSAT 183 RPT AHVLAFFLPRA V A + DA+A+HG+++ YT+PLTR+L +L L + L + A Sbjct: 140 ARPTRAHVLAFFLPRAAVSAHLPDAEAIHGRIVGYTTPLTRMLPGYLKILCQRLPALPAD 199 Query: 184 AAEEAIRVCVDLLLAAFGKQQRLTSSARAAAQSVLRSQIQRHVQSRLYSKDLTPENVLRA 243 E+ IR C L++AAF KQQRL RAAA++ L+ QI+ ++Q+ L+ + LTP+ V+RA Sbjct: 200 EQEQTIRTCARLIIAAFAKQQRLEEHGRAAARAALQGQIEHYIQANLHEEHLTPDGVMRA 259 Query: 244 FDLSRPTLYRMFENEGGLGTYIRNFRLREAAEELVSMRRTAVMEIAYGLGFGSASDFTRA 303 F ++R T+YR+FE++GGL YIR+ RLR+AA EL SMR AV +I GLGF SASDF+RA Sbjct: 260 FPVARSTIYRLFESQGGLAAYIRHCRLRDAAHELTSMRHLAVTQIGLGLGFNSASDFSRA 319 Query: 304 FRRAYGMTPQDFR 316 F RAYGM+P+D+R Sbjct: 320 FSRAYGMSPRDYR 332 >ref|ZP_03266773.1| transcriptional regulator, AraC family [Burkholderia sp. H160] gb|EEA01679.1| transcriptional regulator, AraC family [Burkholderia sp. H160] Length = 326 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 163/314 (51%), Positives = 209/314 (66%), Gaps = 1/314 (0%) Query: 4 FTHHHFSVSQQPIMLQAQAWSERVSGLLDTPMSRTQRQQSFAGEMDSYVFKDMIYLDCRT 63 F + HF +Q W ERV LD P+SR Q F G +D+Y M ++DCRT Sbjct: 5 FDYSHFDTYGTVPRVQLPVWRERVGHFLDVPISRQQLADGFRGSIDTYRVGGMAFMDCRT 64 Query: 64 DPLAQSRTLAKISCDNVRDFVFHVAVEGVMETLTDSRRERKSTQFVPGILALDMGQPMRM 123 DP+AQ+R++A+IS DNVR VFHVAVEG ET T +R + Q PGILALDM QPMRM Sbjct: 65 DPVAQTRSVARISTDNVRQIVFHVAVEGTFETSTGLYPKRHALQTRPGILALDMNQPMRM 124 Query: 124 LRPTYAHVLAFFLPRAMVEAEIADADALHGQVLAYTSPLTRLLLAHLVALSRDLRGMSAT 183 R +LA FLPR M++A + +A ++HG+V+ Y SPL+RL+ A L L R L M A Sbjct: 125 TRGP-CRLLALFLPREMIDAVLPEAASIHGRVIEYQSPLSRLIPAQLAELCRGLPAMDAP 183 Query: 184 AAEEAIRVCVDLLLAAFGKQQRLTSSARAAAQSVLRSQIQRHVQSRLYSKDLTPENVLRA 243 AA+EA+R C L+ AAFGK++ LT SARAAA++ + + +R++ + L DLT ++VL Sbjct: 184 AAQEALRTCALLIAAAFGKERGLTGSARAAARAAMFATARRYIDAHLGEVDLTVDSVLAV 243 Query: 244 FDLSRPTLYRMFENEGGLGTYIRNFRLREAAEELVSMRRTAVMEIAYGLGFGSASDFTRA 303 LSRPTLYR+FE EGGL YIRN RLREAA+EL V+ +A+G GF SASDF RA Sbjct: 244 SRLSRPTLYRLFEPEGGLVAYIRNRRLREAADELHRYPHRPVINVAFGWGFNSASDFNRA 303 Query: 304 FRRAYGMTPQDFRA 317 FRRAY M+P DFRA Sbjct: 304 FRRAYDMSPGDFRA 317 >ref|YP_003608146.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1002] gb|ADG18635.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1002] Length = 342 Score = 295 bits (754), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 157/315 (49%), Positives = 206/315 (65%), Gaps = 3/315 (0%) Query: 4 FTHHHFSVSQQPIMLQAQAWSERVSGLLDTPMSRTQRQQSFAGEMDSYVFKDMIYLDCRT 63 F + HF Q W ERVS LD P+SR Q F G +D+Y M + DCRT Sbjct: 21 FDYTHFDTYSMAPRGQLPMWRERVSHFLDVPISRRQLADGFRGSIDTYRAGGMAFTDCRT 80 Query: 64 DPLAQSRTLAKISCDNVRDFVFHVAVEGVMETLTDSRRERKSTQFVPGILALDMGQPMRM 123 DP+AQ+R++A+IS DNVR VFHVAVEG ET T +R + Q P +LALDM QPM+M Sbjct: 81 DPVAQTRSVARISTDNVRQIVFHVAVEGTFETTTGLYPKRVALQTRPSVLALDMNQPMQM 140 Query: 124 -LRPTYAHVLAFFLPRAMVEAEIADADALHGQVLAYTSPLTRLLLAHLVALSRDLRGMSA 182 L P ++A FLPR +++ + +A+++HG+++ Y +PL RL+ AHL L R L M A Sbjct: 141 TLGP--CRLVALFLPRHLIDPVLPEAESIHGRMIEYQTPLARLIPAHLDDLCRRLPTMDA 198 Query: 183 TAAEEAIRVCVDLLLAAFGKQQRLTSSARAAAQSVLRSQIQRHVQSRLYSKDLTPENVLR 242 AA+EA+ C L+ AAFGK+ LT ARA A++ + + +R++ + L DLT ++VL Sbjct: 199 RAAQEALHTCGLLMAAAFGKETGLTGGARAVARTAMFAAARRYIDANLGQPDLTVDSVLA 258 Query: 243 AFDLSRPTLYRMFENEGGLGTYIRNFRLREAAEELVSMRRTAVMEIAYGLGFGSASDFTR 302 LSRPTLYR+FE EGGL YIRN RLREAA+EL R V+++AYG GF SASDF R Sbjct: 259 MSQLSRPTLYRLFEPEGGLHAYIRNRRLREAADELHRHPRRPVIDVAYGWGFNSASDFNR 318 Query: 303 AFRRAYGMTPQDFRA 317 AFRRAY M+P DFRA Sbjct: 319 AFRRAYDMSPGDFRA 333 >ref|YP_004156751.1| AraC family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38640.1| transcriptional regulator, AraC family [Variovorax paradoxus EPS] Length = 361 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 147/320 (45%), Positives = 213/320 (66%), Gaps = 5/320 (1%) Query: 8 HFSVSQQPIMLQAQAWSERVSGLLDTPMSRTQRQQSFAGEMDSYVFKDMIYLDCRTDPLA 67 HFSV +P Q AW ERV ++D S+ + F+ E+D Y +++ DCR+D + Sbjct: 25 HFSVHGEPAHRQLLAWRERVGHVIDVLPSKADIGKPFSAEIDRYKVDGLLFTDCRSDAML 84 Query: 68 QSRTLAKISCDNVRDFVFHVAVEGVMETL----TDSRRERKSTQFVPGILALDMGQPMRM 123 R+LA+IS DNVRD+VFHV EG ++ + + R + S+ ILALDM QP+RM Sbjct: 85 LERSLARISTDNVRDYVFHVFSEGGVDDVALRASTPRHKAPSSSATTKILALDMNQPVRM 144 Query: 124 LRPTYAHVLAFFLPRAMVEAEIADADALHGQVLAYTSPLTRLLLAHLVALSRDLRGMSAT 183 R + VL FF+P ++V+ + D +A+HG+ + +PLTRL L H AL ++ GM+A Sbjct: 145 RR-SSCRVLTFFVPASLVQQTLPDPEAIHGRTIQDATPLTRLALEHAAALGANIGGMTAA 203 Query: 184 AAEEAIRVCVDLLLAAFGKQQRLTSSARAAAQSVLRSQIQRHVQSRLYSKDLTPENVLRA 243 AA+ A+R L++AAFGKQ L+ +AR+AA++ L +++R++Q+ L+ +LTPE V+ A Sbjct: 204 AADSAVRNAAHLVVAAFGKQAGLSGNARSAARAALFGRVRRYIQANLHRAELTPEGVVSA 263 Query: 244 FDLSRPTLYRMFENEGGLGTYIRNFRLREAAEELVSMRRTAVMEIAYGLGFGSASDFTRA 303 +SRPT+YRMF++EGGLG YIR+ RLR+AA+EL V ++AY +GF SASDFTRA Sbjct: 264 LHVSRPTIYRMFQHEGGLGAYIRHLRLRQAADELARYPHMMVTDVAYAVGFKSASDFTRA 323 Query: 304 FRRAYGMTPQDFRALGLDLR 323 FRRA+GM PQ+FRAL R Sbjct: 324 FRRAHGMAPQEFRALSQTYR 343