BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0109.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001352922.1| GntR family transcriptional regulator [Janth...   150   6e-35
ref|YP_004751570.1| GntR family transcriptional regulator [Colli...   139   1e-31
ref|YP_002909470.1| GntR family transcriptional regulator [Burkh...   134   5e-30
ref|YP_004350521.1| Transcriptional regulator, GntR family prote...   132   1e-29
ref|ZP_04948526.1| Transcriptional regulator [Burkholderia dolos...   125   2e-27

>ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp.
          Marseille]
 gb|ABR89631.1| transcriptional regulator, GntR family [Janthinobacterium sp.
          Marseille]
          Length = 477

 Score =  150 bits (379), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 80/90 (88%)

Query: 1  MKTAPAPLELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTV 60
          MK     L+LSVDRTL+LP+YLQIC+RFKTAI +GHL AG RVPAVRALATE+NLARGTV
Sbjct: 1  MKKPKPALDLSVDRTLELPMYLQICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGTV 60

Query: 61 ETAYRILTDEGYLQVRGAAGTVVSPALPTP 90
          E AYRILTDEGYLQVRGAAGT+VSP+LP P
Sbjct: 61 EMAYRILTDEGYLQVRGAAGTIVSPSLPQP 90


>ref|YP_004751570.1| GntR family transcriptional regulator [Collimonas fungivorans
          Ter331]
 gb|AEK60747.1| transcriptional regulator, GntR family [Collimonas fungivorans
          Ter331]
          Length = 479

 Score =  139 bits (351), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/86 (77%), Positives = 76/86 (88%)

Query: 8  LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVETAYRIL 67
          L+L +DR L+LP+Y QIC+RFKTAI +G+L AG RVPAVRALATELNLARGTVE AYRIL
Sbjct: 12 LDLHIDRALELPMYQQICQRFKTAIERGNLHAGDRVPAVRALATELNLARGTVEMAYRIL 71

Query: 68 TDEGYLQVRGAAGTVVSPALPTPVVV 93
           DEGYLQVRGAAGTVVSP+LP P V+
Sbjct: 72 ADEGYLQVRGAAGTVVSPSLPPPAVL 97


>ref|YP_002909470.1| GntR family transcriptional regulator [Burkholderia glumae BGR1]
 gb|ACR32235.1| Transcriptional regulator, GntR family [Burkholderia glumae BGR1]
          Length = 492

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 69/81 (85%)

Query: 8  LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVETAYRIL 67
          L+L +DR LQLPIYLQIC RFK AI  GHLR G RVPAVR LATELN ARGT+ETAYRIL
Sbjct: 8  LKLDIDRRLQLPIYLQICERFKLAIRAGHLRPGDRVPAVRGLATELNTARGTIETAYRIL 67

Query: 68 TDEGYLQVRGAAGTVVSPALP 88
           DEGYLQVRGAAGT VSP+LP
Sbjct: 68 IDEGYLQVRGAAGTYVSPSLP 88


>ref|YP_004350521.1| Transcriptional regulator, GntR family protein [Burkholderia
          gladioli BSR3]
 gb|AEA65009.1| Transcriptional regulator, GntR family protein [Burkholderia
          gladioli BSR3]
          Length = 490

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 69/81 (85%)

Query: 8  LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVETAYRIL 67
          L+L +DR+L+LP+YLQIC RFK AI  GHLR G RVPAVR LATELN ARGTVE AYRIL
Sbjct: 8  LKLDIDRSLRLPVYLQICERFKHAIGAGHLRPGDRVPAVRGLATELNTARGTVEMAYRIL 67

Query: 68 TDEGYLQVRGAAGTVVSPALP 88
           DEGYLQVRGAAGT VSP+LP
Sbjct: 68 VDEGYLQVRGAAGTYVSPSLP 88


>ref|ZP_04948526.1| Transcriptional regulator [Burkholderia dolosa AUO158]
 gb|EAY71697.1| Transcriptional regulator [Burkholderia dolosa AUO158]
          Length = 531

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 70/85 (82%), Gaps = 1/85 (1%)

Query: 3   TAPAP-LELSVDRTLQLPIYLQICRRFKTAIAQGHLRAGQRVPAVRALATELNLARGTVE 61
           TAPAP L + +DR  QLPIYLQIC RF+TAIA GHLR G RVPA+R LAT+LN ARGTVE
Sbjct: 23  TAPAPTLTIEIDRRHQLPIYLQICERFRTAIAAGHLRPGDRVPALRGLATQLNTARGTVE 82

Query: 62  TAYRILTDEGYLQVRGAAGTVVSPA 86
            AY IL DEGYLQ+RGAAGT VSP+
Sbjct: 83  QAYTILVDEGYLQMRGAAGTFVSPS 107