BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0104.p (552 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775685.1| ATP-dependent DNA ligase [Herbaspirillum ser... 789 0.0 ref|ZP_08273086.1| putative DNA ligase [Oxalobacteraceae bacteri... 742 0.0 ref|YP_001020715.1| ATP-dependent DNA ligase [Methylibium petrol... 723 0.0 ref|YP_001889021.1| ATP-dependent DNA ligase [Burkholderia phyto... 672 0.0 ref|YP_004359588.1| ATP dependent DNA ligase [Burkholderia gladi... 671 0.0 >ref|YP_003775685.1| ATP-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ63777.1| ATP-dependent DNA ligase protein [Herbaspirillum seropedicae SmR1] Length = 555 Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/549 (73%), Positives = 452/549 (82%), Gaps = 12/549 (2%) Query: 1 MRDFAHLYAELDATTATNRKLEALQTYFRRADAADAAWAVYFLAGGKPRQAVPTKLLRHC 60 MR+F+ LY ELDATT+T RKL AL+ YF RAD ADAAWAVYFLAGGKPRQAVPT LL+ C Sbjct: 1 MREFSRLYGELDATTSTTRKLAALEDYFGRADPADAAWAVYFLAGGKPRQAVPTSLLKQC 60 Query: 61 AMQYAQLDEWLFDECYQAVGDLAETIAHILPLATRADDLGLNQWMTERIAPLRGADAETI 120 AM+YAQ+DEWLF+ECYQ+VGDLAETIAHILP A+ ++ LGL +W+ ERIAPLRGA ETI Sbjct: 61 AMEYAQIDEWLFEECYQSVGDLAETIAHILPPASGSNPLGLARWVEERIAPLRGAAPETI 120 Query: 121 RAALFSYWDMLDWQGRFLLSKLIGGGFRVGVSKLLVTRALAVVAEVDAKTIAQRLVGWTD 180 RAALF WD LDWQGRFLLSKLIGGGFRVGVS+LLVTRALA VA++DAK +AQR+VGWTD Sbjct: 121 RAALFQAWDELDWQGRFLLSKLIGGGFRVGVSRLLVTRALAAVAQLDAKLVAQRMVGWTD 180 Query: 181 RSTRPTAAGFSELIAPPSEADRQRRGGQPYPFFLAHPLLADPATLGELGEWQVEWKYDGI 240 RP A F+ LIAP AD+ +GGQPYPFFLAHPL+ PATLG + +WQVEWKYDGI Sbjct: 181 GRARPDAERFARLIAPADSADQPLQGGQPYPFFLAHPLMDAPATLGPIQQWQVEWKYDGI 240 Query: 241 RAQLVHREGRSWLWSRGEELITERFPELAQLPLPDGVVIDGEIVIRRNGV------IAPF 294 RAQLV R G++WLWSRGEELITERFPELA LPLPDG VIDGEIVIR +APF Sbjct: 241 RAQLVRRHGQNWLWSRGEELITERFPELAALPLPDGTVIDGEIVIRHPDAGLAAERVAPF 300 Query: 295 ADLQKRIGRKTLSGKLLAELPAALIAYDLLELDGEDLRGRTQQERRALLEKLAETVP--A 352 ++LQKRIGRK LS +LLAELPA LIAYDLLE DG DLRG Q ERR LE L + P A Sbjct: 301 SELQKRIGRKNLSARLLAELPAGLIAYDLLEQDGCDLRGLPQSERRRRLEALVGSHPAAA 360 Query: 353 LTLAPVIDLAEAADWGALATLRESSRARGVEGMMLKAKSAHYGIGRTKNVGTWWKWKIDS 412 L LAP + A DW ALA LR S+R RGVEGMMLK A YGIGRT+N GTWWKWKID Sbjct: 361 LMLAPTL---TAKDWDALAQLRASARERGVEGMMLKDIDARYGIGRTRNDGTWWKWKIDP 417 Query: 413 YSVDAVLIYAQAGHGRRASLYTDYTFAVWDA-EDATGERRLVPFAKAYSGLTDAEIARVD 471 YS+DAVLIYAQAGHGRRASLYTDYTFA+WD +A +R+LVPFAKAYSGLTDAEIA VD Sbjct: 418 YSIDAVLIYAQAGHGRRASLYTDYTFALWDGPPEAGSQRKLVPFAKAYSGLTDAEIAVVD 477 Query: 472 RIIRSSTVEKFGPVRSVKPSMVFEIGFEGIAASPRHKAGIAVRFPRILRIRDDKPIAEAD 531 ++IR ST+EKFGPVRSV+PSMVFEIGFEGIA S RHKAG+AVRFPRILR R DK + +AD Sbjct: 478 QVIRKSTIEKFGPVRSVQPSMVFEIGFEGIALSSRHKAGMAVRFPRILRQRLDKTVEQAD 537 Query: 532 SLSTLQALL 540 +L+TL+ALL Sbjct: 538 TLATLRALL 546 >ref|ZP_08273086.1| putative DNA ligase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33431.1| putative DNA ligase [Oxalobacteraceae bacterium IMCC9480] Length = 539 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/544 (70%), Positives = 435/544 (79%), Gaps = 8/544 (1%) Query: 1 MRDFAHLYAELDATTATNRKLEALQTYFRRADAADAAWAVYFLAGGKPRQAVPTKLLRHC 60 MR+FA LY LDATT+TNRKL L YFR A +AAWAVYFLAGGKPRQAVPTKLLRH Sbjct: 1 MREFARLYDALDATTSTNRKLAELVAYFRVAAPENAAWAVYFLAGGKPRQAVPTKLLRHY 60 Query: 61 AMQYAQLDEWLFDECYQAVGDLAETIAHILPLATRADDLGLNQWMTERIAPLRGADAETI 120 A + A LD+WLFDECY AVGDLAETIAHILP R DLGL QWM ERI PLRGA E I Sbjct: 61 ATEAAGLDDWLFDECYHAVGDLAETIAHILPAPQRRSDLGLAQWMDERITPLRGAAPEAI 120 Query: 121 RAALFSYWDMLDWQGRFLLSKLIGGGFRVGVSKLLVTRALAVVAEVDAKTIAQRLVGWTD 180 R+A+ +YWD L + RFLL KLIGGGFRVGVSKLLVTRALA VA +D+K IAQRL+GWTD Sbjct: 121 RSAMLAYWDELAPRERFLLVKLIGGGFRVGVSKLLVTRALAGVAALDSKLIAQRLMGWTD 180 Query: 181 RSTRPTAAGFSELIAPPSEADRQRRGGQPYPFFLAHPLLADPATLGELGEWQVEWKYDGI 240 RP+A F L+AP S+ ++ RGGQP+PFFLAHPL A+P TLG + WQVEWKYDGI Sbjct: 181 ARQRPSAERFLALVAPTSDQEQALRGGQPFPFFLAHPLQAEPVTLGPITGWQVEWKYDGI 240 Query: 241 RAQLVHREGRSWLWSRGEELITERFPELAQLPLPDGVVIDGEIVIRRNGVIAPFADLQKR 300 RAQLV R+G+SW+WSRGEELI+E FPE+A + LPDG VIDGEI+I + A F++LQKR Sbjct: 241 RAQLVRRDGQSWVWSRGEELISEGFPEIAAIALPDGTVIDGEILIWGSDTHASFSELQKR 300 Query: 301 IGRKTLSGKLLAELPAALIAYDLLELDGEDLRGRTQQERRALLEKLAETVPA--LTLAPV 358 IGRKTLS KLLAELPA LIAYD+LE DG DLR + Q RR +LEK+ V + L L+P+ Sbjct: 301 IGRKTLSPKLLAELPAVLIAYDVLEHDGIDLREQPQSARRTVLEKVVAAVDSDQLKLSPL 360 Query: 359 IDLAEAADWGALATLRESSRARGVEGMMLKAKSAHYGIGRTKNVGTWWKWKIDSYSVDAV 418 I AA W ALA +R SRAR VEGMMLKA +A YG+GRT++VG WWKWK+D YSVDAV Sbjct: 361 I---VAAGWEALAAIRMQSRARAVEGMMLKAVNAQYGVGRTRDVGVWWKWKVDPYSVDAV 417 Query: 419 LIYAQAGHGRRASLYTDYTFAVWD-AEDATGERRLVPFAKAYSGLTDAEIARVDRIIRSS 477 LIYAQ+GHGRRASLYTDYTFAVWD AED G R LVPFAKAYSGLTDAEIA VD IR + Sbjct: 418 LIYAQSGHGRRASLYTDYTFAVWDVAED--GSRTLVPFAKAYSGLTDAEIALVDARIRKT 475 Query: 478 TVEKFGPVRSVKPSMVFEIGFEGIAASPRHKAGIAVRFPRILRIRDDKPIAEADSLSTLQ 537 T+EKFGPVRSV P+MVFEIGFEGIA SPRHK+GIAVRFPR+LRIRDDKP+ EAD+L TL Sbjct: 476 TIEKFGPVRSVTPTMVFEIGFEGIARSPRHKSGIAVRFPRLLRIRDDKPVEEADTLQTLI 535 Query: 538 ALLN 541 LL Sbjct: 536 GLLG 539 >ref|YP_001020715.1| ATP-dependent DNA ligase [Methylibium petroleiphilum PM1] gb|ABM94480.1| DNA ligase, ATP-dependent, putative [Methylibium petroleiphilum PM1] Length = 542 Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/545 (68%), Positives = 431/545 (79%), Gaps = 7/545 (1%) Query: 1 MRDFAHLYAELDATTATNRKLEALQTYFRRADAADAAWAVYFLAGGKPRQAVPTKLLRHC 60 MRDFA LYA LDATT+T+ KLEAL YFR A A AAWA YFLAGGKPRQAVPT LLR Sbjct: 1 MRDFARLYAALDATTSTHEKLEALTAYFRAAPARHAAWAAYFLAGGKPRQAVPTALLRQL 60 Query: 61 AMQYAQLDEWLFDECYQAVGDLAETIAHILPLATRADDLGLNQWMTERIAPLRGADAETI 120 A + A L WLFD CY+AVGDLAETIA +LP R LGL+ WM ERI PLRGA E + Sbjct: 61 AAERAGLPPWLFDACYEAVGDLAETIALVLPPPVRDSALGLDDWMRERIGPLRGAPPEQV 120 Query: 121 RAALFSYWDMLDWQGRFLLSKLIGGGFRVGVSKLLVTRALAVVAEVDAKTIAQRLVGWTD 180 R ALF WD LD GRFLL KLIGGGFRVGVS+LL+TRALA VA +DAK IAQRL+GWTD Sbjct: 121 RTALFDAWDELDTPGRFLLGKLIGGGFRVGVSRLLLTRALAAVAGLDAKLIAQRLMGWTD 180 Query: 181 RSTRPTAAGFSELIAPPSEADRQRRGGQPYPFFLAHPLLADPATLGELGEWQVEWKYDGI 240 + +PTA ++ L+AP + GGQPYPFFLAHPL A+P TLG L +WQ EWKYDGI Sbjct: 181 KGAQPTADAYAALLAPEAATGDASPGGQPYPFFLAHPLQAEPQTLGALADWQAEWKYDGI 240 Query: 241 RAQLVHREGRSWLWSRGEELITERFPELAQLPLPDGVVIDGEIVIRRNGVIAPFADLQKR 300 RAQLV R G+SWLWSRGEELIT+RFPELA+L LPDG VIDGEIV+ ++ APFA LQ+R Sbjct: 241 RAQLVRRGGQSWLWSRGEELITDRFPELAKLSLPDGAVIDGEIVVWQDSRPAPFAALQRR 300 Query: 301 IGRKTLSGKLLAELPAALIAYDLLELDGEDLRGRTQQERRALLEKL--AETVPALTLAPV 358 IGRKTL +LL ELPA LIAYDLLE +G D R Q RR LE+L A PAL L+P Sbjct: 301 IGRKTLGARLLQELPAVLIAYDLLEQEGVDRRDEPQHLRRMRLEQLISATADPALQLSPQ 360 Query: 359 IDLAEAADWGALATLRESSRARGVEGMMLKAKSAHYGIGRTKNVGTWWKWKIDSYSVDAV 418 + +A DW ALA LR+++R RGVEG+MLKA+ A YG+GRTK+VG WWKWK+D Y+VDAV Sbjct: 361 V---QAPDWAALAVLRDTARERGVEGLMLKAREARYGVGRTKDVGVWWKWKVDPYAVDAV 417 Query: 419 LIYAQAGHGRRASLYTDYTFAVWDA--EDATGERRLVPFAKAYSGLTDAEIARVDRIIRS 476 L+YAQAGHGRRASLYTDYTFAVWDA + A GERRLVPFAKAYSGL+DAEIARVD +IR Sbjct: 418 LVYAQAGHGRRASLYTDYTFAVWDAPPDGAPGERRLVPFAKAYSGLSDAEIARVDAVIRK 477 Query: 477 STVEKFGPVRSVKPSMVFEIGFEGIAASPRHKAGIAVRFPRILRIRDDKPIAEADSLSTL 536 +T+EKFGPVRSV+P++VFEIGFEGIA S RH+AG+AVRFPRILR R DKP+ EAD+L+TL Sbjct: 478 TTIEKFGPVRSVRPTLVFEIGFEGIALSTRHRAGVAVRFPRILRTRPDKPVEEADTLATL 537 Query: 537 QALLN 541 + LL Sbjct: 538 KGLLT 542 >ref|YP_001889021.1| ATP-dependent DNA ligase [Burkholderia phytofirmans PsJN] gb|ACD19651.1| ATP dependent DNA ligase [Burkholderia phytofirmans PsJN] Length = 558 Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/560 (62%), Positives = 419/560 (74%), Gaps = 17/560 (3%) Query: 1 MRDFAHLYAELDATTATNRKLEALQTYFRRADAADAAWAVYFLAGGKPRQAVPTKLLRHC 60 M+ FA LY LDATT+T+ KLEAL +YF A+ DAAWA YFLAGGKPRQ+VPT+LL Sbjct: 1 MKRFAALYTALDATTSTHDKLEALTSYFAVAEPEDAAWASYFLAGGKPRQSVPTRLLTEI 60 Query: 61 AMQYAQLDEWLFDECYQAVGDLAETIAHILPLATRADDLGLNQWMTERIAPLRGADAETI 120 A + A L WLF+E Y AVGDLAETIAHILP A R+ +LGL QW+ +R+ LRG E + Sbjct: 61 ARERAGLPAWLFEESYHAVGDLAETIAHILPPAQRSSELGLTQWIEQRVLTLRGVSPEEL 120 Query: 121 RAALFSYWDMLDWQGRFLLSKLIGGGFRVGVSKLLVTRALAVVAEVDAKTIAQRLVGWTD 180 R L SYWD LDW GRFLL+KLIGGGFRVGV++ LV RALA VA VD K IAQR+VGWTD Sbjct: 121 RTRLLSYWDELDWGGRFLLTKLIGGGFRVGVARQLVVRALAEVAGVDHKRIAQRMVGWTD 180 Query: 181 RSTRPTAAGFSELIAPPSEADRQRRG--------GQPYPFFLAHPLLADPATLGELGEWQ 232 +P AA + LIAP + D + G G PYPFFLAHPL ADPATLG+ +WQ Sbjct: 181 SQQKPDAARYLRLIAPEATGDETQAGDHPHESDLGLPYPFFLAHPLQADPATLGDPSQWQ 240 Query: 233 VEWKYDGIRAQLVHREGRSWLWSRGEELITERFPELAQL--PLPDGVVIDGEIVIRRNGV 290 +EWK+DGIRAQLV R GR WLWSRGE+LIT+RFPE+A L LPDG V+DGEI+ G Sbjct: 241 IEWKWDGIRAQLVKRGGRVWLWSRGEDLITDRFPEVAALGEALPDGFVVDGEILAWERGD 300 Query: 291 IA--PFADLQKRIGRKTLSGKLLAELPAALIAYDLLELDGEDLRGRTQQERRALLEKLAE 348 +A PFA LQ RI RKTL+ K+LA+ PA L+AYDLLE G+DLR ERRA LE LA Sbjct: 301 MAPLPFARLQPRIARKTLTKKILADSPATLLAYDLLEARGQDLRMTPLVERRARLEALAV 360 Query: 349 TVP---ALTLAPVIDLAEAADWGALATLRESSRARGVEGMMLKAKSAHYGIGRTKNVGTW 405 ++ A L V L +A DW ALA LR+ SRARGVEG+M+K + + YG+GRTK GTW Sbjct: 361 SIEGTLAQDLLRVSPLVDAVDWQALAALRDESRARGVEGLMVKQRESMYGVGRTKASGTW 420 Query: 406 WKWKIDSYSVDAVLIYAQAGHGRRASLYTDYTFAVWDAEDATGERRLVPFAKAYSGLTDA 465 WKWKID Y++DAVL+YAQ GHGRRASLYTD+TFAVWD +A G R LVPFAKAYSGLTD Sbjct: 421 WKWKIDPYAIDAVLLYAQRGHGRRASLYTDFTFAVWD--EANGVRTLVPFAKAYSGLTDE 478 Query: 466 EIARVDRIIRSSTVEKFGPVRSVKPSMVFEIGFEGIAASPRHKAGIAVRFPRILRIRDDK 525 E+ +VD I+R +T+EKFGPVRSV P++VFEIGFEGI ASPRHK+G+AVRFPR+LR R DK Sbjct: 479 EMRQVDAIVRKTTIEKFGPVRSVTPTLVFEIGFEGIQASPRHKSGVAVRFPRMLRWRTDK 538 Query: 526 PIAEADSLSTLQALLNEAEG 545 I +AD+L+ L+ +++ G Sbjct: 539 HIDDADTLAMLKGFIDDRAG 558 >ref|YP_004359588.1| ATP dependent DNA ligase [Burkholderia gladioli BSR3] gb|AEA59632.1| ATP dependent DNA ligase [Burkholderia gladioli BSR3] Length = 558 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/561 (63%), Positives = 414/561 (73%), Gaps = 23/561 (4%) Query: 1 MRDFAHLYAELDATTATNRKLEALQTYFRRADAADAAWAVYFLAGGKPRQAVPTKLLRHC 60 M+ FA LYA LDATT+T KLEAL YF A+ DAAWA YFLAGGKPRQ+VPT+LL C Sbjct: 1 MKRFAALYAALDATTSTQVKLEALIAYFSAAEPEDAAWASYFLAGGKPRQSVPTRLLAQC 60 Query: 61 AMQYAQLDEWLFDECYQAVGDLAETIAHILPLATRADDLGLNQWMTERIAPLRGADAETI 120 A A L +WLF+E YQAVGDLAETIAH+LP ATRA LGL QW+ R LRG++ E + Sbjct: 61 ARDRAGLPDWLFEESYQAVGDLAETIAHVLPPATRASSLGLAQWIETRALTLRGSEPEAL 120 Query: 121 RAALFSYWDMLDWQGRFLLSKLIGGGFRVGVSKLLVTRALAVVAEVDAKTIAQRLVGWTD 180 R L YWD LDW RFLL+KLIGGGFRVGVS+ LV RALA VA VD K IAQR+VGWTD Sbjct: 121 RERLVGYWDELDWSERFLLTKLIGGGFRVGVSRQLVVRALAAVAGVDHKRIAQRMVGWTD 180 Query: 181 RSTRPTAAGFSELIAPPSEAD--------RQRRGGQPYPFFLAHPLLADPATLGELGEWQ 232 P A + LIA + D + G PYPFFLAHPL ADPATLG +G+W Sbjct: 181 SRQAPDAGRYLRLIAAEPQGDAGAVAAATHESDLGLPYPFFLAHPLQADPATLGPIGDWL 240 Query: 233 VEWKYDGIRAQLVHREGRSWLWSRGEELITERFPELAQL--PLPDGVVIDGEIVIRRNGV 290 VEWK+DGIRAQLV R GR W+WSRGE+L+TERFPELA L LPDG V+DGEI+ G Sbjct: 241 VEWKWDGIRAQLVKRAGRVWIWSRGEDLLTERFPELAALGEALPDGTVVDGEILAWEPGA 300 Query: 291 IA--PFADLQKRIGRKTLSGKLLAELPAALIAYDLLELDGEDLRGRTQQERRALLEKLAE 348 PFA LQ RI RK+LS ++LA+ PAAL AYDLLE G DLR RRA LE LAE Sbjct: 301 DTPLPFARLQPRITRKSLSKRVLADSPAALRAYDLLEEGGRDLRTEPLARRRARLEALAE 360 Query: 349 TVP------ALTLAPVIDLAEAADWGALATLRESSRARGVEGMMLKAKSAHYGIGRTKNV 402 +P AL ++P++ EA DW ALA LRE SRARGVEG+MLK +++ YG+GRTK Sbjct: 361 ALPAGESGVALRVSPLV---EAVDWPALAALREQSRARGVEGLMLKQRASMYGVGRTKAA 417 Query: 403 GTWWKWKIDSYSVDAVLIYAQAGHGRRASLYTDYTFAVWDAEDATGERRLVPFAKAYSGL 462 GTWWKWKID Y++DAVL+YAQ GHGRRASLYTD+TFAVWD D G R LVPFAKAYSGL Sbjct: 418 GTWWKWKIDPYAIDAVLLYAQRGHGRRASLYTDFTFAVWDEVD--GVRTLVPFAKAYSGL 475 Query: 463 TDAEIARVDRIIRSSTVEKFGPVRSVKPSMVFEIGFEGIAASPRHKAGIAVRFPRILRIR 522 TD E+ +VD I+R +T+EKFGPVRSV PS+VFEIGFEGI ASPRHK+GIAVRFPR+LR R Sbjct: 476 TDEEMRQVDAIVRRTTIEKFGPVRSVTPSLVFEIGFEGIQASPRHKSGIAVRFPRMLRWR 535 Query: 523 DDKPIAEADSLSTLQALLNEA 543 DK I +AD+L+ L+ L+EA Sbjct: 536 TDKSIEDADTLAMLKGFLDEA 556