BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0096.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06839425.1| Mandelate racemase/muconate lactonizing prote... 730 0.0 ref|YP_554310.1| putative mandelate racemase / muconatelactonizi... 728 0.0 ref|YP_004618343.1| 2- oxo-3-deoxygalactonate 6-phosphate aldola... 443 e-122 ref|YP_004386049.1| galactonate dehydratase [Alicycliphilus deni... 441 e-121 ref|YP_004124778.1| mandelate racemase/muconate lactonizing prot... 440 e-121 >ref|ZP_06839425.1| Mandelate racemase/muconate lactonizing protein [Burkholderia sp. Ch1-1] gb|EFG72966.1| Mandelate racemase/muconate lactonizing protein [Burkholderia sp. Ch1-1] Length = 392 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/396 (89%), Positives = 371/396 (93%), Gaps = 4/396 (1%) Query: 1 MTQQIHRIASVEALHVGQFLYARIRTEAGLTGYGEAGSWGHIEAAKAALEKFGKYLVGQD 60 M IHRI SVEALHVGQFLYARIRTEAGLTG+GEAGSWGHIEAAKAALEKFG+YLVG+D Sbjct: 1 MKSSIHRITSVEALHVGQFLYARIRTEAGLTGFGEAGSWGHIEAAKAALEKFGEYLVGKD 60 Query: 61 ANQIELHWNIMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQAXRVPPVWQLLGGAYRNK 120 ANQIE HWN+MQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQ PVWQLLGGAYR+K Sbjct: 61 ANQIERHWNVMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQV----PVWQLLGGAYRDK 116 Query: 121 LRVYGHVYAETLEEVLSECRRLREEGFTAVGHINPFLDEPEGHEYFRSHAGKVRDAKERV 180 LRVYGHVYAETL+EVL++CRRLR EGFTA+GHINPFLDEPEG YFRS AGKVRDAKERV Sbjct: 117 LRVYGHVYAETLDEVLADCRRLRAEGFTAIGHINPFLDEPEGDVYFRSFAGKVRDAKERV 176 Query: 181 MAFREAVGPDVDLLIEMHRRLSPAEAIAIGQVLEPLTPMWLEDPLRPEFYAQMTTVGHAI 240 MAFREAVGPDVDLLIEMHRRL+PAEAIAIGQVLEPLTPMWLEDPLRPEFY QMTTVGHAI Sbjct: 177 MAFREAVGPDVDLLIEMHRRLNPAEAIAIGQVLEPLTPMWLEDPLRPEFYTQMTTVGHAI 236 Query: 241 RVPIATGERFCTPAEFQQQLAGGGVRYARASVCVCGGITGAKKIAALAEAQNVDLAPHNP 300 RVP+ATGERF TPAEF QLAGGGVRYAR SVCVCGGITGAKKIAALAEAQNVD+APHNP Sbjct: 237 RVPVATGERFSTPAEFHLQLAGGGVRYARTSVCVCGGITGAKKIAALAEAQNVDIAPHNP 296 Query: 301 LSPISLAACMQVAAAVPNFAIQEYPTGFENLVLKSGQKLLGSDLVKSHPVPQAGFIAVPD 360 LSPISLAACMQVAA+VPNFAIQEYPTGFENLVLKSGQ LLGSDLVK+HPVP+ GFI VPD Sbjct: 297 LSPISLAACMQVAASVPNFAIQEYPTGFENLVLKSGQNLLGSDLVKNHPVPKEGFITVPD 356 Query: 361 APGIGVELVDEVEFKRAPLHRLVSMRRTIDGAPLDQ 396 APGIGVELVD+VE +RAPLHR VSMR TIDGAPLDQ Sbjct: 357 APGIGVELVDDVEHRRAPLHRPVSMRSTIDGAPLDQ 392 >ref|YP_554310.1| putative mandelate racemase / muconatelactonizing enzyme [Burkholderia xenovorans LB400] gb|ABE34960.1| putative mandelate racemase / muconatelactonizing enzyme [Burkholderia xenovorans LB400] Length = 392 Score = 728 bits (1879), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/396 (89%), Positives = 370/396 (93%), Gaps = 4/396 (1%) Query: 1 MTQQIHRIASVEALHVGQFLYARIRTEAGLTGYGEAGSWGHIEAAKAALEKFGKYLVGQD 60 M HRI SVEALHVGQFLYARIRTEAGLTG+GEAGSWGHIEAAKAALEKFG+YLVG+D Sbjct: 1 MKSSTHRITSVEALHVGQFLYARIRTEAGLTGFGEAGSWGHIEAAKAALEKFGEYLVGKD 60 Query: 61 ANQIELHWNIMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQAXRVPPVWQLLGGAYRNK 120 ANQIE HWN+MQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQ PVWQLLGGAYR+K Sbjct: 61 ANQIERHWNVMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQV----PVWQLLGGAYRDK 116 Query: 121 LRVYGHVYAETLEEVLSECRRLREEGFTAVGHINPFLDEPEGHEYFRSHAGKVRDAKERV 180 LRVYGHVYAETL+EVL++CRRLR EGFTA+GHINPFLDEPEG YFRS AGKVRDAKERV Sbjct: 117 LRVYGHVYAETLDEVLADCRRLRAEGFTAIGHINPFLDEPEGDVYFRSFAGKVRDAKERV 176 Query: 181 MAFREAVGPDVDLLIEMHRRLSPAEAIAIGQVLEPLTPMWLEDPLRPEFYAQMTTVGHAI 240 MAFREAVGPDVDLLIEMHRRL+PAEAIAIGQVLEPLTPMWLEDPLRPEFY QMTTVGHAI Sbjct: 177 MAFREAVGPDVDLLIEMHRRLNPAEAIAIGQVLEPLTPMWLEDPLRPEFYTQMTTVGHAI 236 Query: 241 RVPIATGERFCTPAEFQQQLAGGGVRYARASVCVCGGITGAKKIAALAEAQNVDLAPHNP 300 RVP+ATGERF TPAEF QLAGGGVRYAR SVCVCGGITGAKKIAALAEAQNVD+APHNP Sbjct: 237 RVPVATGERFSTPAEFHLQLAGGGVRYARTSVCVCGGITGAKKIAALAEAQNVDIAPHNP 296 Query: 301 LSPISLAACMQVAAAVPNFAIQEYPTGFENLVLKSGQKLLGSDLVKSHPVPQAGFIAVPD 360 LSPISLAACMQVAA+VPNFAIQEYPTGFENLVLKSGQ LLGSDLVK+HPVP+ GFI VPD Sbjct: 297 LSPISLAACMQVAASVPNFAIQEYPTGFENLVLKSGQNLLGSDLVKNHPVPKEGFITVPD 356 Query: 361 APGIGVELVDEVEFKRAPLHRLVSMRRTIDGAPLDQ 396 APGIGVELVD+VE +RAPLHR VSMR TIDGAPLDQ Sbjct: 357 APGIGVELVDDVEHRRAPLHRPVSMRSTIDGAPLDQ 392 >ref|YP_004618343.1| 2- oxo-3-deoxygalactonate 6-phosphate aldolase [Ramlibacter tataouinensis TTB310] gb|AEG92324.1| 2- oxo-3-deoxygalactonate 6-phosphate aldolase; Galactonate dehydratase [Ramlibacter tataouinensis TTB310] Length = 387 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/390 (55%), Positives = 276/390 (70%), Gaps = 4/390 (1%) Query: 7 RIASVEALHVGQFLYARIRTEAGLTGYGEAGSWGHIEAAKAALEKFGKYLVGQDANQIEL 66 +I VE LHVGQF++ R+ T+ G+TGYGEAG+WGHIEAA A + +F +YL G+DA IE Sbjct: 2 KIRKVEPLHVGQFMFVRVTTDQGITGYGEAGTWGHIEAAGACIRRFAEYLEGKDAFAIEH 61 Query: 67 HWNIMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQAXRVPPVWQLLGGAYRNKLRVYGH 126 HWN+M RFS+F+G A NAA+SAIDIALWD+ GK L P+++LLGGA R K R+YGH Sbjct: 62 HWNVMHRFSYFQGLAENAAISAIDIALWDIKGKALGV----PIYELLGGAARRKARIYGH 117 Query: 127 VYAETLEEVLSECRRLREEGFTAVGHINPFLDEPEGHEYFRSHAGKVRDAKERVMAFREA 186 +Y T+E++L EC+ E GF A GH+NPFLDE YF++H K+RDA + RE Sbjct: 118 IYENTIEKMLVECQAKMEAGFNAFGHLNPFLDEGHDQVYFKTHIKKMRDAIDNTRRMREV 177 Query: 187 VGPDVDLLIEMHRRLSPAEAIAIGQVLEPLTPMWLEDPLRPEFYAQMTTVGHAIRVPIAT 246 VG VDLLIE+HRRL+PAEAI + +E PM++EDP+RPE M V I +PIAT Sbjct: 178 VGDRVDLLIEIHRRLTPAEAIVFARGIEDTHPMFIEDPIRPEGPDAMARVAEKIHIPIAT 237 Query: 247 GERFCTPAEFQQQLAGGGVRYARASVCVCGGITGAKKIAALAEAQNVDLAPHNPLSPISL 306 GERF T EFQ LA GGV YAR VC+CGGITGA+K+AA+AEA V + PHNPLSPI L Sbjct: 238 GERFATIYEFQALLARGGVEYARVDVCLCGGITGARKVAAIAEAHQVQVVPHNPLSPIGL 297 Query: 307 AACMQVAAAVPNFAIQEYPTGFENLVLKSGQKLLGSDLVKSHPVPQAGFIAVPDAPGIGV 366 AAC+Q+ AA+PNFAIQEY TGFE + +S + LGS++V P P GF+ +P PG+G+ Sbjct: 298 AACLQLDAAIPNFAIQEYATGFEAGIFESRPEHLGSNIVDQVPRPDNGFVDIPSGPGLGM 357 Query: 367 ELVDEVEFKRAPLHRLVSMRRTIDGAPLDQ 396 L+ + + R PL + +SMR DG +DQ Sbjct: 358 NLLPDAQRIRPPLSKPISMRPHFDGFVVDQ 387 >ref|YP_004386049.1| galactonate dehydratase [Alicycliphilus denitrificans K601] gb|AEB82533.1| Galactonate dehydratase [Alicycliphilus denitrificans K601] Length = 387 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/390 (54%), Positives = 274/390 (70%), Gaps = 4/390 (1%) Query: 7 RIASVEALHVGQFLYARIRTEAGLTGYGEAGSWGHIEAAKAALEKFGKYLVGQDANQIEL 66 +I VE LHVGQF++ RI T+ G GYGEAG+WGHIEAA + +F +YL G+DA IE Sbjct: 2 KIRKVEPLHVGQFMFVRITTDDGTVGYGEAGTWGHIEAAGVCIRRFAEYLEGKDAFAIEH 61 Query: 67 HWNIMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQAXRVPPVWQLLGGAYRNKLRVYGH 126 HWN+M RFS+F G A NAA+SAIDIALWD+ GK L P+++LLGGA R K R+YGH Sbjct: 62 HWNVMHRFSYFTGLAENAAISAIDIALWDIKGKALNV----PIYELLGGAARTKARIYGH 117 Query: 127 VYAETLEEVLSECRRLREEGFTAVGHINPFLDEPEGHEYFRSHAGKVRDAKERVMAFREA 186 +Y ++E++L EC+ E GF A GH+NPFLDE YF++H K+RDA + RE Sbjct: 118 IYENSIEKMLVECQAKMEAGFNAFGHLNPFLDEGNDQVYFKTHIKKMRDAIDNTRRMREV 177 Query: 187 VGPDVDLLIEMHRRLSPAEAIAIGQVLEPLTPMWLEDPLRPEFYAQMTTVGHAIRVPIAT 246 VG VDLLIE+HRRL+PAEAI + +E PM++EDP+RPE M V I +PIAT Sbjct: 178 VGDRVDLLIEIHRRLTPAEAIVFARGIEDTHPMFIEDPIRPEGPDGMARVAEKIGIPIAT 237 Query: 247 GERFCTPAEFQQQLAGGGVRYARASVCVCGGITGAKKIAALAEAQNVDLAPHNPLSPISL 306 GERF EFQ +A GGV YAR +C+CGGITGAKK+AALAEA +V + PHNPLSPI L Sbjct: 238 GERFANLYEFQTLMARGGVEYARVDLCLCGGITGAKKVAALAEAHHVQVVPHNPLSPIGL 297 Query: 307 AACMQVAAAVPNFAIQEYPTGFENLVLKSGQKLLGSDLVKSHPVPQAGFIAVPDAPGIGV 366 AAC+Q+ AA+PNFAIQEY TGFE + +S + LGSD+V P+P AGF+ +P PG+G+ Sbjct: 298 AACLQLDAAIPNFAIQEYATGFEAGIFESRPEHLGSDIVDQVPLPDAGFVDIPTGPGLGM 357 Query: 367 ELVDEVEFKRAPLHRLVSMRRTIDGAPLDQ 396 L+ + + R PL + +SMR DG +DQ Sbjct: 358 NLLPDAQKIRPPLVKPISMRPHFDGFVVDQ 387 >ref|YP_004124778.1| mandelate racemase/muconate lactonizing protein [Alicycliphilus denitrificans BC] gb|ADU97890.1| Mandelate racemase/muconate lactonizing protein [Alicycliphilus denitrificans BC] Length = 387 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/390 (54%), Positives = 274/390 (70%), Gaps = 4/390 (1%) Query: 7 RIASVEALHVGQFLYARIRTEAGLTGYGEAGSWGHIEAAKAALEKFGKYLVGQDANQIEL 66 +I VE LHVGQF++ RI T+ G GYGEAG+WGHIEAA + +F +YL G+DA IE Sbjct: 2 KIRKVEPLHVGQFMFVRITTDDGTVGYGEAGTWGHIEAAGVCIRRFAEYLEGKDAFAIEH 61 Query: 67 HWNIMQRFSHFRGTAVNAAVSAIDIALWDLLGKRLQAXRVPPVWQLLGGAYRNKLRVYGH 126 HWN+M RFS+F G A NAA+SAIDIALWD+ GK L P+++LLGGA R K R+YGH Sbjct: 62 HWNVMHRFSYFTGLAENAAISAIDIALWDIKGKALNV----PIYELLGGAARTKARIYGH 117 Query: 127 VYAETLEEVLSECRRLREEGFTAVGHINPFLDEPEGHEYFRSHAGKVRDAKERVMAFREA 186 +Y ++E++L EC+ E GF A GH+NPFLDE YF++H K+RDA + RE Sbjct: 118 IYEHSIEKMLVECQAKMEAGFNAFGHLNPFLDEGNDQIYFKTHIKKMRDAIDNTRRMREV 177 Query: 187 VGPDVDLLIEMHRRLSPAEAIAIGQVLEPLTPMWLEDPLRPEFYAQMTTVGHAIRVPIAT 246 VG VDLLIE+HRRL+PAEAI + +E PM++EDP+RPE M V I +PIAT Sbjct: 178 VGDRVDLLIEIHRRLTPAEAIVFARGIEDTHPMFIEDPIRPEGPDGMARVAEKIGIPIAT 237 Query: 247 GERFCTPAEFQQQLAGGGVRYARASVCVCGGITGAKKIAALAEAQNVDLAPHNPLSPISL 306 GERF EFQ +A GGV YAR +C+CGGITGAKK+AA+AEA +V + PHNPLSPI L Sbjct: 238 GERFANLYEFQTLMARGGVEYARVDLCLCGGITGAKKVAAIAEAHHVQVVPHNPLSPIGL 297 Query: 307 AACMQVAAAVPNFAIQEYPTGFENLVLKSGQKLLGSDLVKSHPVPQAGFIAVPDAPGIGV 366 AAC+Q+ AA+PNFAIQEY TGFE + +S + LGSD+V P+P AGF+ +P PG+G+ Sbjct: 298 AACLQLDAAIPNFAIQEYATGFEAGIFESRPEHLGSDIVDQVPLPDAGFVDIPTGPGLGM 357 Query: 367 ELVDEVEFKRAPLHRLVSMRRTIDGAPLDQ 396 L+ + + R PL + +SMR DG +DQ Sbjct: 358 NLLPDAQKIRPPLVKPISMRPHFDGFVVDQ 387