BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0091.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002947592.1| transcriptional regulator, AraC family [Vari...   206   8e-52
ref|YP_004487916.1| AraC family transcriptional regulator [Delft...   193   7e-48
ref|YP_001894487.1| AraC family transcriptional regulator [Burkh...   191   3e-47
ref|YP_001897671.1| AraC family transcriptional regulator [Ralst...   187   5e-46
gb|EFV86416.1| AraC family Transcriptional regulator [Achromobac...   186   1e-45

>ref|YP_002947592.1| transcriptional regulator, AraC family [Variovorax paradoxus S110]
 gb|ACS22326.1| transcriptional regulator, AraC family [Variovorax paradoxus S110]
          Length = 164

 Score =  206 bits (525), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 101/141 (71%), Positives = 116/141 (82%), Gaps = 1/141 (0%)

Query: 1   MDAASHEDWPVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPI 60
           MDAASHE+WPVERLA VS VSEAHFAR+FK+AFGTPPHRYLLTRRIERA ALLR+S+ PI
Sbjct: 23  MDAASHEEWPVERLAQVSGVSEAHFARSFKQAFGTPPHRYLLTRRIERAMALLRESDRPI 82

Query: 61  TEIAFRTGWRSLGTFGRIFREITGDNPGTVRKQARIAAQELSSVPACIVSAAHRPDLKTS 120
           T+IAF TGW SLGTFGR FR+ITG +P  +R +A+   QEL  VP CIV+AAHRP L T+
Sbjct: 83  TDIAFETGWASLGTFGRTFRDITGSSPSAIRARAKATPQELGRVPVCIVNAAHRPHLTTA 142

Query: 121 VLEKRRLSGDGIKET-QPKEI 140
           V EKRRL+ DG  E  QP+EI
Sbjct: 143 VSEKRRLAADGTNEPEQPQEI 163


>ref|YP_004487916.1| AraC family transcriptional regulator [Delftia sp. Cs1-4]
 gb|AEF89561.1| transcriptional regulator, AraC family [Delftia sp. Cs1-4]
          Length = 174

 Score =  193 bits (490), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 112/140 (80%)

Query: 1   MDAASHEDWPVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPI 60
           +DAASHE WPV RLA VS VSEAHFAR+FK+AFG+PPHRYLLTRRIERA  LLR+++L I
Sbjct: 34  IDAASHEAWPVGRLAQVSGVSEAHFARSFKQAFGSPPHRYLLTRRIERAMTLLRETDLAI 93

Query: 61  TEIAFRTGWRSLGTFGRIFREITGDNPGTVRKQARIAAQELSSVPACIVSAAHRPDLKTS 120
           T+IAF TGW SLGTFGR FR+ITGD+P  VR +AR   +EL  VPACIVSAA+RPDL T+
Sbjct: 94  TDIAFDTGWASLGTFGRTFRDITGDSPSAVRVRARATMRELGRVPACIVSAAYRPDLTTA 153

Query: 121 VLEKRRLSGDGIKETQPKEI 140
           V EKRR +     E + +EI
Sbjct: 154 VSEKRRRATSDTNEPEQQEI 173


>ref|YP_001894487.1| AraC family transcriptional regulator [Burkholderia phytofirmans
           PsJN]
 gb|ACD15263.1| transcriptional regulator, AraC family [Burkholderia phytofirmans
           PsJN]
          Length = 176

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 109/140 (77%)

Query: 1   MDAASHEDWPVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPI 60
           MDAASHE WPV+RLA+VS VSEAHFAR+FK AFG PPHRYLLTRRIE+A  LLRD+ L I
Sbjct: 36  MDAASHEAWPVDRLATVSGVSEAHFARSFKRAFGIPPHRYLLTRRIEQANTLLRDTALSI 95

Query: 61  TEIAFRTGWRSLGTFGRIFREITGDNPGTVRKQARIAAQELSSVPACIVSAAHRPDLKTS 120
           TEIAF TGW SLGTFGR+FR+I G +P  +R++A+ A ++L  VPAC++ AA RPDL  +
Sbjct: 96  TEIAFATGWESLGTFGRVFRDINGRSPSAMRREAQAAVRQLDRVPACVLKAAQRPDLTIA 155

Query: 121 VLEKRRLSGDGIKETQPKEI 140
           VLEKRR    G   T  KE+
Sbjct: 156 VLEKRRREAKGTLPTSTKEV 175


>ref|YP_001897671.1| AraC family transcriptional regulator [Ralstonia pickettii 12J]
 ref|ZP_07674868.1| transcriptional regulator [Ralstonia sp. 5_7_47FAA]
 gb|ACD25239.1| transcriptional regulator, AraC family [Ralstonia pickettii 12J]
 gb|EFP66793.1| transcriptional regulator [Ralstonia sp. 5_7_47FAA]
          Length = 168

 Score =  187 bits (475), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/145 (63%), Positives = 111/145 (76%), Gaps = 5/145 (3%)

Query: 1   MDAASHEDWPVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPI 60
           MDAASHE WPV+RLA VS VS AHFAR+FK+AFG PPHRYLLTRRIE+A  LLRD++LPI
Sbjct: 25  MDAASHEAWPVKRLAEVSGVSAAHFARSFKQAFGIPPHRYLLTRRIEQATTLLRDTDLPI 84

Query: 61  TEIAFRTGWRSLGTFGRIFREITGDNPGTVRKQARIAA--QELSSVPACIVSAAHRPDLK 118
            EIA+ TGW SLGTFGRIFR+ITG +P  +R+ A+  A  Q+L  VPAC++ AA RPDL 
Sbjct: 85  IEIAYATGWESLGTFGRIFRDITGQSPSALRRHAQATASLQQLDRVPACVLKAAQRPDLV 144

Query: 119 TSVLEKRRLSGDGIKETQPKEIDNE 143
           T+V EKRR   +G   T P   +N+
Sbjct: 145 TAVSEKRRQLAEG---TNPSPTNNK 166


>gb|EFV86416.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans
           C54]
          Length = 166

 Score =  186 bits (472), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 89/126 (70%), Positives = 104/126 (82%)

Query: 1   MDAASHEDWPVERLASVSHVSEAHFARAFKEAFGTPPHRYLLTRRIERAAALLRDSELPI 60
           +DAASHE WPVERLA VS VS A+FAR FK AFG PPHRYLLTRR+E+A ALLRD++LPI
Sbjct: 33  IDAASHEAWPVERLAEVSGVSVAYFARCFKRAFGLPPHRYLLTRRVEQAIALLRDTDLPI 92

Query: 61  TEIAFRTGWRSLGTFGRIFREITGDNPGTVRKQARIAAQELSSVPACIVSAAHRPDLKTS 120
           TEIA+ TGW+SLGTFGRIFR+ITG +PG +R +AR   + L  VPAC+V AA RPDL  +
Sbjct: 93  TEIAYATGWQSLGTFGRIFRDITGASPGAMRVRARAGQEGLGLVPACVVKAALRPDLNIA 152

Query: 121 VLEKRR 126
           VLEKRR
Sbjct: 153 VLEKRR 158