BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0088.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751008.1| LysR family transcriptional regulator [Colli... 518 e-145 ref|YP_587036.1| LysR family transcriptional regulator [Cupriavi... 276 2e-72 ref|YP_002007832.1| transcriptional regulator LysR family [Cupri... 266 4e-69 ref|YP_840788.1| LysR family transcriptional regulator [Ralstoni... 261 9e-68 ref|YP_004681435.1| LysR family transcriptional regulator [Cupri... 261 1e-67 >ref|YP_004751008.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60185.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 307 Score = 518 bits (1334), Expect = e-145, Method: Compositional matrix adjust. Identities = 251/307 (81%), Positives = 271/307 (88%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 MIRYLKTFIAAA+LGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGK+V VS+HG Sbjct: 1 MIRYLKTFIAAAQLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKSVTVSDHG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 KQL TAEEI+RLFESMKGQT+V ATRGKIDIGAISTVQL LLPA LADF PLVEVN Sbjct: 61 KQLLRTAEEIIRLFESMKGQTEVTATRGKIDIGAISTVQLNLLPAALADFRTCFPLVEVN 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSIKSL 180 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTK LKWTTMLRETYV IAP SARE ++K L Sbjct: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKSLKWTTMLRETYVAIAPLSAREKTVKDL 180 Query: 181 LESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYDLA 240 L +HPFLRYSRRSYGGQLVDRYLKRTRL VNDTMELDEPMVI+EMVRKGLGVAIIPYDLA Sbjct: 181 LAAHPFLRYSRRSYGGQLVDRYLKRTRLHVNDTMELDEPMVIMEMVRKGLGVAIIPYDLA 240 Query: 241 AGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAKEESSMQTLKA 300 AGAS +K+R+LPL GFFREIGVLQ VTP +++ L+ C+ RAA+AKE + LK+ Sbjct: 241 AGASSKKLRILPLGNAGFFREIGVLQHVTPAANIAADELLNCLTRAAKAKEVVCTENLKS 300 Query: 301 DFEKGAR 307 D KGAR Sbjct: 301 DIAKGAR 307 >ref|YP_587036.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF11767.1| putative transcriptional regulator, LysR family [Cupriavidus metallidurans CH34] Length = 301 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 143/293 (48%), Positives = 192/293 (65%), Gaps = 8/293 (2%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 ++RY KTF+ AA GSFS+AGARLGLTQSAVS QIRRLE++L C LF R GK+V +SE G Sbjct: 14 LLRYFKTFLVAAETGSFSSAGARLGLTQSAVSTQIRRLEEDLGCTLFDRSGKSVTLSEEG 73 Query: 61 KQLFVTAEEIVRLFESMKG---QTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLV 117 +Q+ A IV L+ESMKG Q D A +D+GA+STVQ LLP + F P Sbjct: 74 RQMLADASRIVALYESMKGARLQRDTA----PLDLGAVSTVQASLLPRAMQRFRVAFPDT 129 Query: 118 EVNVVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSI 177 VN+VPG S QL++Q+D+ +L +AV+++P L + LKW +++E +V +AP A + Sbjct: 130 HVNIVPGMSTQLLTQVDARELDIAVLVKPRLGIPPELKWVPLVKERFVAVAPKGA-PADL 188 Query: 178 KSLLESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPY 237 K+LL + PF+RY+R S GGQLVDRYLKR RL V + MELDEP VI++MV +GLG AIIP Sbjct: 189 KTLLSTVPFIRYNRHSTGGQLVDRYLKRHRLWVREGMELDEPAVILQMVGEGLGCAIIPC 248 Query: 238 DLAAGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAK 290 +L A V +P+ G +REIGVL R + + L++ A + Sbjct: 249 ELVPLAQTPNVEQVPMPGMPMYREIGVLVRQSALKRASAAALIDAFVAACHER 301 >ref|YP_002007832.1| transcriptional regulator LysR family [Cupriavidus taiwanensis LMG 19424] emb|CAQ71775.1| putative transcriptional regulator, LysR [Cupriavidus taiwanensis LMG 19424] Length = 297 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 138/291 (47%), Positives = 188/291 (64%), Gaps = 1/291 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 MIRY +TF+ AA GSFS A ARL LTQSAVS QIRRLE++L+C LF R GK+V +SE G Sbjct: 1 MIRYFQTFLTAAEAGSFSAAAARLALTQSAVSTQIRRLEEDLDCRLFERTGKSVVLSEAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 +L A +V L+ +MK + A +++GA+STVQ LL + F + P VN Sbjct: 61 HRLLPEARRLVELYAAMKDRAGPHADAAPVELGAVSTVQSTLLAEAMRHFRERFPDSHVN 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSIKSL 180 VVPG S QL++Q+D+ +L +AV+IRP L + LKW ++RE +V IAP A +++L Sbjct: 121 VVPGMSTQLLTQVDARELDVAVLIRPRLGLPPELKWVPLVRERFVGIAPAGA-PRELRAL 179 Query: 181 LESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYDLA 240 +E+ PF+RY+R S GGQLVD+YLKR RL V + MELDEP VI++MV GLG AIIP +L Sbjct: 180 VEALPFIRYNRHSTGGQLVDQYLKRQRLWVREGMELDEPAVILQMVAAGLGCAIIPAELV 239 Query: 241 AGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAKE 291 V +PL GG +RE+GVL R + V L++ A+ ++ Sbjct: 240 PLREAAGVVQVPLPGGPLYREVGVLVRESALRRAPVEALIDAFVAASARRQ 290 >ref|YP_840788.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ96058.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 294 Score = 261 bits (667), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 141/295 (47%), Positives = 187/295 (63%), Gaps = 2/295 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 MIRY +TF+ AA GSFS A ARL LTQSAVS QIRRLE++L+C LF R GK+VA+SE G Sbjct: 1 MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 ++L A V L+ +MK + A +++GA+STVQ LL + F P VN Sbjct: 61 RRLVPEARRFVELYAAMKDRAGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVN 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSIKSL 180 VVPG S QL++Q+D+ +L +AV+IRP L LKW ++RE +V I P A +++L Sbjct: 121 VVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLVREGFVGIGPAGA-PADLRAL 179 Query: 181 LESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYDLA 240 LE+ PF+RY+R S GGQLVD YLKR RL V + MELDEP VI+ MV GLG AIIP L Sbjct: 180 LETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILLMVAAGLGCAIIPSGLV 239 Query: 241 AGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAAQAKEESSM 295 V PL GG +R++GVL R + V+ L++ AA A+ +S++ Sbjct: 240 PLQQSAGVVQAPLPGGPLYRDVGVLVRESALRRAPVAALIDAFV-AASARWQSAV 293 >ref|YP_004681435.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80203.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 294 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 138/287 (48%), Positives = 183/287 (63%), Gaps = 1/287 (0%) Query: 1 MIRYLKTFIAAARLGSFSTAGARLGLTQSAVSMQIRRLEDELNCELFTRVGKTVAVSEHG 60 MIRY +TF+ AA GSFS A ARL LTQSAVS QIRRLE++L+C LF R GK+VA+SE G Sbjct: 1 MIRYFQTFLVAAETGSFSAAAARLALTQSAVSTQIRRLEEDLDCVLFDRTGKSVALSEAG 60 Query: 61 KQLFVTAEEIVRLFESMKGQTDVAATRGKIDIGAISTVQLGLLPAVLADFCKELPLVEVN 120 ++L A V L+ +MK + A +++GA+STVQ LL + F P VN Sbjct: 61 RRLVPEARRFVELYAAMKDRAGPHADAAPVELGAVSTVQATLLADAMRHFRGRFPDSHVN 120 Query: 121 VVPGTSVQLMSQIDSNDLSLAVMIRPNLKMTKGLKWTTMLRETYVVIAPTSARETSIKSL 180 VVPG S QL++Q+D+ +L +AV+IRP L LKW ++RE +V I P A +++L Sbjct: 121 VVPGMSTQLLTQVDARELDIAVLIRPRLGFPPDLKWVPLVREGFVGIGPAGA-PADLRAL 179 Query: 181 LESHPFLRYSRRSYGGQLVDRYLKRTRLQVNDTMELDEPMVIIEMVRKGLGVAIIPYDLA 240 LE+ PF+RY+R S GGQLVD YLKR RL V + MELDEP VI++MV GLG AIIP +L Sbjct: 180 LETLPFIRYNRHSTGGQLVDGYLKRQRLWVREGMELDEPAVILQMVAAGLGCAIIPSELV 239 Query: 241 AGASIRKVRVLPLEGGGFFREIGVLQRVTPTSSVVVSTLMECIARAA 287 V PL GG +R++GVL R + V+ L++ A+ Sbjct: 240 PLQQSAGVVQAPLAGGPLYRDVGVLVRESALRREPVAALIDAFVAAS 286