BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0077.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777628.1| amino acid ABC transporter permease [Herbasp... 340 1e-91 ref|ZP_06685208.1| glutamine ABC superfamily ATP binding cassett... 317 7e-85 gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter x... 316 2e-84 ref|YP_004752056.1| amino acid ABC transporter permease [Collimo... 310 8e-83 gb|EGP46368.1| amino acid ABC transporter permease [Achromobacte... 310 1e-82 >ref|YP_003777628.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65720.1| ABC-type amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 164/220 (74%), Positives = 190/220 (86%) Query: 1 MIYQFDFSSILEYAKVLERGVLMTIRLIVIGGVAGVALGIFGAWARTQGPRWLKPTISAY 60 M YQFDF S +Y V+ +GV TI LI IGGV GVA+GIFGAWARTQGP WLKP +S Y Sbjct: 1 MAYQFDFLSTFDYTDVIVKGVATTIELIAIGGVLGVAVGIFGAWARTQGPGWLKPVVSGY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSIGVTITELQAAIIAMVINLGAYSTEIIRAGVSAIARGQ 120 VE+IRNTPFLVQLFFIFFGLPS+ + I+E+ AAI+AMVINLGAYSTEIIRAGV AI RGQ Sbjct: 61 VEIIRNTPFLVQLFFIFFGLPSLDIHISEITAAIVAMVINLGAYSTEIIRAGVQAIPRGQ 120 Query: 121 IEAALSLSMTRLQVFRYVILRPALQKVWPALSSQIVIVMLGSSICSQISVEELSFAANFI 180 IEAA SLSM+R+Q+FR++ILRPALQK+WPALSSQ+VIVMLGS++CSQI+VEELSFAANFI Sbjct: 121 IEAAQSLSMSRMQIFRHIILRPALQKIWPALSSQVVIVMLGSAVCSQIAVEELSFAANFI 180 Query: 181 QSRNFRAFEAYLVTTLIYLIMAILLRQILHYIGRRFVFHR 220 Q RNFRAFEAY+V T IYL++AILLRQ+L IG F+ R Sbjct: 181 QGRNFRAFEAYIVATAIYLVLAILLRQVLRLIGHYFITAR 220 >ref|ZP_06685208.1| glutamine ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF77825.1| glutamine ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 222 Score = 317 bits (813), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 148/215 (68%), Positives = 185/215 (86%) Query: 1 MIYQFDFSSILEYAKVLERGVLMTIRLIVIGGVAGVALGIFGAWARTQGPRWLKPTISAY 60 M YQ+DF+S+L+Y VL +G+ +T+ LI G VAGVALGI AW RTQGPRWL+ ++AY Sbjct: 1 MAYQYDFASVLDYTPVLIKGIGVTVELIAFGAVAGVALGIVCAWVRTQGPRWLRVPVTAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSIGVTITELQAAIIAMVINLGAYSTEIIRAGVSAIARGQ 120 VE+IRNTPFL+QLFF+FFGLPS+GV + E+QAA +AM +NLGAYSTEIIRAG+ A +GQ Sbjct: 61 VEVIRNTPFLIQLFFVFFGLPSLGVQLGEMQAACLAMALNLGAYSTEIIRAGIDATPKGQ 120 Query: 121 IEAALSLSMTRLQVFRYVILRPALQKVWPALSSQIVIVMLGSSICSQISVEELSFAANFI 180 EA SL+MTRLQVFR+V+L+PAL+++WPALSSQIVIVMLGS++CSQI+ E+L+FAANFI Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALKRIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QSRNFRAFEAYLVTTLIYLIMAILLRQILHYIGRR 215 QSRNFRAFE YLVTT IYL++AI+LRQ+L GRR Sbjct: 181 QSRNFRAFEVYLVTTGIYLVLAIVLRQLLRMAGRR 215 >gb|EFV82368.1| polar amino acid ABC transporter [Achromobacter xylosoxidans C54] Length = 222 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 146/215 (67%), Positives = 182/215 (84%) Query: 1 MIYQFDFSSILEYAKVLERGVLMTIRLIVIGGVAGVALGIFGAWARTQGPRWLKPTISAY 60 M YQFDF+S+ +Y VL +G+ +T+ LI G VAGVALGI AWARTQGPRWL+ ++AY Sbjct: 1 MAYQFDFASVFDYTPVLIKGIGVTVELIAFGAVAGVALGIACAWARTQGPRWLRAPVTAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSIGVTITELQAAIIAMVINLGAYSTEIIRAGVSAIARGQ 120 VE++RNTPFL+QLFF+FFGLPS+GV +E+QAA +AM +NLGAYS EIIRAG+ A +GQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFSEMQAACLAMALNLGAYSAEIIRAGIDATPKGQ 120 Query: 121 IEAALSLSMTRLQVFRYVILRPALQKVWPALSSQIVIVMLGSSICSQISVEELSFAANFI 180 EA SL+MTRLQVFR+V+L+PAL ++WPALSSQIVIVMLGS++CSQI+ E+L+FAANFI Sbjct: 121 YEAGASLAMTRLQVFRHVVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QSRNFRAFEAYLVTTLIYLIMAILLRQILHYIGRR 215 QSRNFRAFE Y VTT IYL++A+LLRQ+L GRR Sbjct: 181 QSRNFRAFEVYFVTTGIYLVLAVLLRQLLRMTGRR 215 >ref|YP_004752056.1| amino acid ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK61233.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Collimonas fungivorans Ter331] Length = 226 Score = 310 bits (795), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 160/222 (72%), Positives = 195/222 (87%), Gaps = 1/222 (0%) Query: 1 MIYQFDFSSILEYAKVLERGVLMTIRLIVIGGVAGVALGIFGAWARTQGPRWLKPTISAY 60 M Y FDF + +Y VL +GVL+TI LI IGGV GVA+GIFGAWARTQGPRWL+P +SAY Sbjct: 1 MSYHFDFLAPFDYPAVLVKGVLVTIELIAIGGVLGVAVGIFGAWARTQGPRWLRPLVSAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSIGVTITELQAAIIAMVINLGAYSTEIIRAGVSAIARGQ 120 VELIRNTPFL+QLFFIFFGLP IGV I E+QAA++AMVINLGAYS EIIRAG++A+ARGQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPGIGVQIGEMQAALLAMVINLGAYSCEIIRAGIAAVARGQ 120 Query: 121 IEAALSLSMTRLQVFRYVILRPALQKVWPALSSQIVIVMLGSSICSQISVEELSFAANFI 180 +EA LSL+MTR+Q+FR+VIL PALQK+WPALSSQ+VIVMLGS++CSQI+VEEL++AANFI Sbjct: 121 VEAGLSLAMTRMQIFRHVILPPALQKIWPALSSQVVIVMLGSAVCSQIAVEELAYAANFI 180 Query: 181 QSRNFRAFEAYLVTTLIYLIMAILLRQILHYIGRRFVFHRPS 222 Q RNFR+FE+YL++T IYL++AI LRQ+L G R +F RP+ Sbjct: 181 QGRNFRSFESYLLSTAIYLLLAIGLRQLLRLAGDR-LFGRPA 221 >gb|EGP46368.1| amino acid ABC transporter permease [Achromobacter xylosoxidans AXX-A] Length = 222 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 144/215 (66%), Positives = 178/215 (82%) Query: 1 MIYQFDFSSILEYAKVLERGVLMTIRLIVIGGVAGVALGIFGAWARTQGPRWLKPTISAY 60 M YQFDF+S+ +Y VL +G+ +T+ LI G V GVALGI AWARTQGPRWL+ ++AY Sbjct: 1 MAYQFDFASVFDYTPVLVKGIGVTVELIAFGAVVGVALGIGCAWARTQGPRWLRAPVTAY 60 Query: 61 VELIRNTPFLVQLFFIFFGLPSIGVTITELQAAIIAMVINLGAYSTEIIRAGVSAIARGQ 120 VE++RNTPFL+QLFF+FFGLPS+GV E+QAA +AM +NLGAYS EIIRAG+ A RGQ Sbjct: 61 VEVVRNTPFLIQLFFVFFGLPSLGVQFNEMQAACLAMALNLGAYSAEIIRAGIDATPRGQ 120 Query: 121 IEAALSLSMTRLQVFRYVILRPALQKVWPALSSQIVIVMLGSSICSQISVEELSFAANFI 180 EA SL+MTR QVFR+++L+PAL ++WPALSSQIVIVMLGS++CSQI+ E+L+FAANFI Sbjct: 121 YEAGASLAMTRWQVFRHIVLKPALARIWPALSSQIVIVMLGSAVCSQIAAEDLTFAANFI 180 Query: 181 QSRNFRAFEAYLVTTLIYLIMAILLRQILHYIGRR 215 QSRNFRAFE Y VTT IYL +A+LLRQ+L GRR Sbjct: 181 QSRNFRAFEVYFVTTGIYLALAVLLRQLLRMTGRR 215