BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0072.p         (191 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_06733478.1| hypothetical protein NEIELOOT_00287 [Neisseri...    83   2e-14
ref|ZP_06394323.1| conserved hypothetical protein [Neisseria muc...    71   1e-10

>ref|ZP_06733478.1| hypothetical protein NEIELOOT_00287 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gb|EFE50936.1| hypothetical protein NEIELOOT_00287 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 164

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 76/147 (51%), Gaps = 4/147 (2%)

Query: 43  GLEQVA---GIHVIDQVGDDFGVGLAFEDVADALQLLAQFFVVLDDAVVDQRDAVAREMR 99
           G +Q A   G+ VID VGDDFG+GL FE VA  L+  A  F V DDAVVD  +  A ++ 
Sbjct: 10  GFKQFAAVLGVFVIDAVGDDFGIGLRFEGVAQGLEAFAFGFEVFDDAVVDDGNHAAGDVG 69

Query: 100 VGVVRSRCAVRGPACVGDAGEAGQAGFGDLLLQLGDTRGAARALQFAVHVYGHAAGIIAA 159
           VGV     AV  P  + D   A  A F   +     T   A A  FAVHVYG    I+A+
Sbjct: 70  VGVRLGYTAVGCPTGMTDTDMAEHAFFACRIFHQLHTADTADAFDFAVHVYGDTRRIVAS 129

Query: 160 VFETLEAFEQNRGDILL-RNCADDTAH 185
           VF+  E   Q    I++  N   DTAH
Sbjct: 130 VFKAFETVGQKIDYIVIGANSTYDTAH 156


>ref|ZP_06394323.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
 gb|EFC87315.1| conserved hypothetical protein [Neisseria mucosa ATCC 25996]
          Length = 164

 Score = 70.9 bits (172), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 78/155 (50%), Gaps = 4/155 (2%)

Query: 35  EAAHGLLHGLEQVA---GIHVIDQVGDDFGVGLAFEDVADALQLLAQFFVVLDDAVVDQR 91
           E   G   G +Q A   G+ VID VGDDFGVGL FE V    +  A  F V DDAVVD  
Sbjct: 2   ETGGGCTDGFKQFAAVLGVFVIDAVGDDFGVGLRFEGVTQGFEAFAFGFEVFDDAVVDDG 61

Query: 92  DAVAREMRVGVVRSRCAVRGPACVGDAGEAGQAGFGDLLLQLGDTRGAARALQFAVHVYG 151
           D  A ++ VGV     AV  PA + DA  +  A F   +L        A A  FAV V G
Sbjct: 62  DHAAGDVGVGVGFGYAAVGRPAGMADADVSEHAFFARGVLHQLHAADTAHAFDFAVCVDG 121

Query: 152 HAAGIIAAVFETLEAFEQNRGDILL-RNCADDTAH 185
           +   +IA +F+  +   Q    I++  + ADDTAH
Sbjct: 122 NTRRVIATIFKAFKTVGQKIDYIVIGADGADDTAH 156