BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0068.p         (288 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777796.1| hypothetical protein Hsero_4421 [Herbaspiril...   254   1e-65

>ref|YP_003777796.1| hypothetical protein Hsero_4421 [Herbaspirillum seropedicae SmR1]
 gb|ADJ65888.1| hypothetical protein Hsero_4421 [Herbaspirillum seropedicae SmR1]
          Length = 323

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 167/253 (66%)

Query: 1   LDYKRFQVEHARGNHSMSVRYLKSAISTAPYNNEILGDYKELVKKTSGIKKLTLIIASKK 60
           L+YKR QV   RG+   +V + + A++  PYN +++ +Y++LV   S IK L LII+ KK
Sbjct: 62  LEYKRGQVSKLRGDKPGAVAHARRAVALNPYNEDLIREYRDLVANASTIKNLALIISCKK 121

Query: 61  NEVQALKLAAQFDQANIEYMIVSGSDAPSIGHVRALQVDASDRYESRPQKVAAAFTWAYE 120
            E +AL L  Q+++A IE +I+SG D  +I H RA+QV A D YE  P+K  AA TW YE
Sbjct: 122 YEQKALSLQRQYEEAGIESLIISGHDTEAINHPRAVQVAAPDNYEGLPRKTVAACTWVYE 181

Query: 121 NIGNNVGIMKVDDEMVLQDGEKLRQRLAQFIDENTYVGVPSASLSHDRCLHWGLCHDQDL 180
           N+G NVGI+KVDD+  L D  + RQ L Q    N Y GVP +  +HDR  HW  C D+ L
Sbjct: 182 NVGRNVGILKVDDDQTLFDPVRARQLLDQLHTLNVYAGVPVSGTTHDRNWHWNKCQDKAL 241

Query: 181 NRRVYGRPVLRPWASGEAYYLGPQAVEKLVLSLLRFPGLFEGEYYEDKLVGDVLLFENTD 240
           N   YG+P  R WA G AYYLGP  +EKLV++++RFPGLF+GEYYEDKLVGD L+ E   
Sbjct: 242 NTISYGKPFWRHWAMGGAYYLGPGPLEKLVMTMMRFPGLFDGEYYEDKLVGDALMVEQVP 301

Query: 241 LTEMKDVNEFGLS 253
           L E+    +FGLS
Sbjct: 302 LKELAGYEDFGLS 314