BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0062.p         (176 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003606631.1| glycosyl transferase family 2 [Burkholderia ...   190   9e-47
gb|AAK15339.1|AF332547_16 flagellar glycosyl transferase [Pseudo...    68   4e-10
gb|AAP35720.1| unknown [Pseudomonas aeruginosa]                        67   7e-10
ref|ZP_01364459.1| hypothetical protein PaerPA_01001566 [Pseudom...    67   1e-09
gb|EGM23628.1| hypothetical protein PA13_00250 [Pseudomonas aeru...    67   2e-09

>ref|YP_003606631.1| glycosyl transferase family 2 [Burkholderia sp. CCGE1002]
 gb|ADG17120.1| glycosyl transferase family 2 [Burkholderia sp. CCGE1002]
          Length = 558

 Score =  190 bits (482), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 110/144 (76%)

Query: 1   VKGVNDPRIRYFHHGFQKGTRNARALWEHASGQYVKWLFDDDLLMPASVETLVSALRANQ 60
           V G NDPRIRYFHHGFQ G RN  ALW HASG+YVKWL+DDDLLMP SV TLV+AL ++ 
Sbjct: 48  VDGANDPRIRYFHHGFQNGLRNQEALWAHASGRYVKWLYDDDLLMPTSVATLVAALESHP 107

Query: 61  EAVLAFHERVIIDETNNVISTPNSLLPAGQVALVDHAFLLENMLGKIHNFIGEPSNIMLV 120
           E+ LAFH+RV+ID  + VI  P +L+  G+ AL+D AFL+ NM+   +NF+GEPSN+MLV
Sbjct: 108 ESTLAFHQRVVIDTDDTVIDVPAALIQPGETALLDRAFLVANMVATANNFVGEPSNVMLV 167

Query: 121 RDRIDISSVFNYRTWILDFIGDVA 144
           R+R+D++ +  YR   + ++ DVA
Sbjct: 168 RERVDVACMMKYRGHGIGYLTDVA 191


>gb|AAK15339.1|AF332547_16 flagellar glycosyl transferase [Pseudomonas aeruginosa]
          Length = 1137

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 74/144 (51%), Gaps = 12/144 (8%)

Query: 9   IRYFHHGFQKGTRNARALW-EHASGQYVKWLFDDDLLMPASVETLVSALRANQEAVLAFH 67
           IRYF +  + G   + A     A G+YVK+L DDD+L+P  VETLV A+      VLA  
Sbjct: 88  IRYFRNETRLGELGSTAKGIRLAEGEYVKFLQDDDVLLPECVETLVGAMEREPNVVLASS 147

Query: 68  ERVIIDETNNVISTPN---SLLPAGQVALVDHAFLLENMLGKIHNFIGEPSNIMLVRDRI 124
            R+ IDE    +  P+   +  P     L+D   L+  +     NFIGEPS +M  RD +
Sbjct: 148 RRLRIDEEGQPL--PDILATCFPFAGDVLIDGRELVSFLADHTINFIGEPSCLMARRDAL 205

Query: 125 ----DISSVFNYRTWILDFIGDVA 144
               +   + N R   +D+IGD+A
Sbjct: 206 LQICERLMMLNGRA--IDWIGDLA 227


>gb|AAP35720.1| unknown [Pseudomonas aeruginosa]
          Length = 1168

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 9   IRYFHHGFQKGTRNARALW-EHASGQYVKWLFDDDLLMPASVETLVSALRANQEAVLAFH 67
           IRYF +  + G   + A     A G+YVK+L DDD+L+P  VE LV A+      VLA  
Sbjct: 62  IRYFRNETRLGELGSTAKGIRLAEGEYVKFLHDDDVLLPECVEALVGAMEREPNVVLALS 121

Query: 68  ERVIIDETNNVI-STPNSLLPAGQVALVDHAFLLENMLGKIHNFIGEPSNIMLVRDRI-- 124
            R+ IDE    +     +  P     L+D   L+  +     NFIGEPS +M  RD +  
Sbjct: 122 RRLRIDEEGQPLPDILATCFPFAGDVLIDGRELVSFLADHTINFIGEPSCLMARRDALLQ 181

Query: 125 --DISSVFNYRTWILDFIGDVA 144
             +   + N R   +D+IGD+A
Sbjct: 182 ICERLMMLNGRA--IDWIGDLA 201


>ref|ZP_01364459.1| hypothetical protein PaerPA_01001566 [Pseudomonas aeruginosa PACS2]
          Length = 1168

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 9   IRYFHHGFQKGTRNARALW-EHASGQYVKWLFDDDLLMPASVETLVSALRANQEAVLAFH 67
           IRYF +  + G   + A     A G+YVK+L DDD+L+P  VE LV A+      VLA  
Sbjct: 62  IRYFRNETRLGELGSTAKGIRLAEGEYVKFLHDDDVLLPECVEALVGAMEREPNVVLASS 121

Query: 68  ERVIIDETNNVI-STPNSLLPAGQVALVDHAFLLENMLGKIHNFIGEPSNIMLVRDRI-- 124
            R+ IDE    +     +  P     L+D   L+  +     NFIGEPS +M  RD +  
Sbjct: 122 RRLRIDEEGQPLPDILATCFPFAGDVLIDGRELVSFLADHTINFIGEPSCLMARRDALLQ 181

Query: 125 --DISSVFNYRTWILDFIGDVA 144
             +   + N R   +D+IGD+A
Sbjct: 182 ICERLMMLNGRA--IDWIGDLA 201


>gb|EGM23628.1| hypothetical protein PA13_00250 [Pseudomonas aeruginosa 138244]
          Length = 1168

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 9   IRYFHHGFQKGTRNARALW-EHASGQYVKWLFDDDLLMPASVETLVSALRANQEAVLAFH 67
           IRYF +  + G   + A     A G+YVK+L DDD+L+P  VE LV A+      VLA  
Sbjct: 62  IRYFRNETRLGELGSTAKGIRLAEGEYVKFLHDDDVLLPECVEALVGAMEREPNVVLASS 121

Query: 68  ERVIIDETNNVI-STPNSLLPAGQVALVDHAFLLENMLGKIHNFIGEPSNIMLVRDRI-- 124
            R+ IDE    +     +  P     L+D   L+  +     NFIGEPS +M  RD +  
Sbjct: 122 RRLRIDEEGQPLPDILATCFPFAGDVLIDGRELVSFLADHTINFIGEPSCLMARRDALLQ 181

Query: 125 --DISSVFNYRTWILDFIGDVA 144
             +   + N R   +D+IGD+A
Sbjct: 182 ICERLMMLNGRA--IDWIGDLA 201