BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0057.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ACO81753.1| RfbD [Herbaspirillum seropedicae SmR1] 316 3e-84 ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductase [Herbaspiri... 314 1e-83 ref|YP_003525523.1| dTDP-4-dehydrorhamnose reductase [Sideroxyda... 301 7e-80 ref|ZP_03574127.1| dTDP-4-dehydrorhamnose reductase [Burkholderi... 299 3e-79 ref|ZP_06846045.1| dTDP-4-dehydrorhamnose reductase [Burkholderi... 299 3e-79 >gb|ACO81753.1| RfbD [Herbaspirillum seropedicae SmR1] Length = 471 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 156/295 (52%), Positives = 203/295 (68%), Gaps = 3/295 (1%) Query: 1 LKILLTGQTGQLGHVLAQDMQFLGQVICPSHTEMDLMQPDQIRSFIRAIRPDLIINPAAY 60 ++ILLTG +GQLG VL + G+++ PS E+DL ++SF++ RP LI+N AAY Sbjct: 1 MRILLTGASGQLGQVLQPMLARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAY 60 Query: 61 TAVDKAESEVSLATRINAEAPMILAQEAQALDAGFIHFSTDYVFDGEKTAPYTERDQPYP 120 TAVDKAES+V+ A +NA APMILAQ+AQ L A +HFSTDYVFDG+ PY E D P Sbjct: 61 TAVDKAESDVARAEAVNALAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGP 120 Query: 121 SNIYGKTKLEGEQAIAEQSDAYWIFRTSWVYGAHGSNFLKTIVRLAQERESLHVVADQIG 180 N+YG+TKL GEQ IA DAYWI RTSWVYG +GSNFLKT+ RLA ERE L VV DQIG Sbjct: 121 LNVYGRTKLAGEQGIAAHCDAYWILRTSWVYGCYGSNFLKTMWRLAGEREYLTVVDDQIG 180 Query: 181 APTWTKTISQTLQQCLRQRPENISLTAYLRENTGIYHLTADGETSWHGYAQHIVRQLAAL 240 APTWT TI+ TL + L + +R+ TG+YHL+A G TSWHG+AQ I++ L A Sbjct: 181 APTWTHTIADTLARMLAHGADA---QQSVRDTTGLYHLSAGGATSWHGFAQRILQLLRAQ 237 Query: 241 DFQLSLKTNAILEVATSGHPSAARRPANSRLNTNKIREKFNIALPLWHEAVDQCL 295 L + +A+ +P+ A+RP NSRL+T +R F+++LP W EA+++CL Sbjct: 238 GETALLDPALVRPIASDAYPAIAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCL 292 >ref|YP_003777748.1| dTDP-4-dehydrorhamnose reductase [Herbaspirillum seropedicae SmR1] gb|ADJ65840.1| dTDP-4-dehydrorhamnose reductase protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 314 bits (804), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 156/295 (52%), Positives = 202/295 (68%), Gaps = 3/295 (1%) Query: 1 LKILLTGQTGQLGHVLAQDMQFLGQVICPSHTEMDLMQPDQIRSFIRAIRPDLIINPAAY 60 ++ILLTG +GQLG VL + G+++ PS E+DL ++SF++ RP LI+N AAY Sbjct: 1 MRILLTGASGQLGQVLQPMLARHGELLAPSSRELDLADRQALQSFLQQARPGLIVNAAAY 60 Query: 61 TAVDKAESEVSLATRINAEAPMILAQEAQALDAGFIHFSTDYVFDGEKTAPYTERDQPYP 120 TAVDKAES+V+ A +NA APMILAQ+AQ L A +HFSTDYVFDG+ PY E D P Sbjct: 61 TAVDKAESDVARAEAVNALAPMILAQQAQMLGAPLVHFSTDYVFDGKSARPYVETDPTGP 120 Query: 121 SNIYGKTKLEGEQAIAEQSDAYWIFRTSWVYGAHGSNFLKTIVRLAQERESLHVVADQIG 180 N+YG+TKL GEQ IA DAYWI RTSWVYG +GSNFLKT+ RLA ERE L VV DQIG Sbjct: 121 LNVYGRTKLAGEQGIAAHCDAYWILRTSWVYGCYGSNFLKTMWRLAGEREYLTVVDDQIG 180 Query: 181 APTWTKTISQTLQQCLRQRPENISLTAYLRENTGIYHLTADGETSWHGYAQHIVRQLAAL 240 APTWT TI+ TL + L +R+ TG+YHL+A G TSWHG+AQ I++ L A Sbjct: 181 APTWTHTIADTLARMLAH---GADAQQSVRDTTGLYHLSAGGATSWHGFAQRILQLLRAQ 237 Query: 241 DFQLSLKTNAILEVATSGHPSAARRPANSRLNTNKIREKFNIALPLWHEAVDQCL 295 L + +A+ +P+ A+RP NSRL+T +R F+++LP W EA+++CL Sbjct: 238 GETALLDPALVRPIASDAYPAIAQRPRNSRLDTGLLRRTFSLSLPTWEEALERCL 292 >ref|YP_003525523.1| dTDP-4-dehydrorhamnose reductase [Sideroxydans lithotrophicus ES-1] gb|ADE13136.1| dTDP-4-dehydrorhamnose reductase [Sideroxydans lithotrophicus ES-1] Length = 299 Score = 301 bits (772), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 145/298 (48%), Positives = 197/298 (66%), Gaps = 4/298 (1%) Query: 2 KILLTGQTGQLGHVLAQDMQFLGQVICPSHTEMDLMQPDQIRSFIRAIRPDLIINPAAYT 61 +IL+TG+ GQ+G L + + G++I MDL PD IR IR +RPD+I+NPAAYT Sbjct: 3 RILVTGKNGQVGWELQRSLAAFGEIIALDSDSMDLADPDAIRRTIREVRPDIIVNPAAYT 62 Query: 62 AVDKAESEVSLATRINAEAPMILAQEAQALDAGFIHFSTDYVFDGEKTAPYTERDQPYPS 121 AVDKAESE+ LA +N AP +LA+EA+ L A +H+STDYVFDG K APY E D P P Sbjct: 63 AVDKAESEMELANAVNGIAPGVLAEEAKLLGAILVHYSTDYVFDGSKPAPYVESDVPNPQ 122 Query: 122 NIYGKTKLEGEQAIAEQSDAYWIFRTSWVYGAHGSNFLKTIVRLAQERESLHVVADQIGA 181 ++YG+TKL GEQA+ + IFRTSWVYG HG NF+KT++RLA+ER L +VADQ GA Sbjct: 123 SVYGRTKLAGEQAVRASGCKHLIFRTSWVYGVHGGNFVKTMLRLARERNELRIVADQFGA 182 Query: 182 PTWTKTISQTLQQCLRQRPENISLTAYLRENTGIYHLTADGETSWHGYAQHIVRQLAALD 241 PTW K I+ + L N A+ +G+YHLTA G T+WH +A+ I+R+ D Sbjct: 183 PTWAKDIANSTATAL----HNWQQLAWDDRLSGLYHLTAAGRTNWHQFAETIIREARKYD 238 Query: 242 FQLSLKTNAILEVATSGHPSAARRPANSRLNTNKIREKFNIALPLWHEAVDQCLTELF 299 L+ KT A+ +AT +P A+RP NS L +K+R F IA+P W +++ +C+ L+ Sbjct: 239 TALAAKTIAVNPIATHEYPLPAKRPVNSVLANDKVRNAFGIAMPEWQDSLVECVRLLY 296 >ref|ZP_03574127.1| dTDP-4-dehydrorhamnose reductase [Burkholderia multivorans CGD2M] ref|ZP_03579474.1| dTDP-4-dehydrorhamnose reductase [Burkholderia multivorans CGD2] gb|EEE06204.1| dTDP-4-dehydrorhamnose reductase [Burkholderia multivorans CGD2] gb|EEE11344.1| dTDP-4-dehydrorhamnose reductase [Burkholderia multivorans CGD2M] Length = 300 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 145/297 (48%), Positives = 195/297 (65%), Gaps = 8/297 (2%) Query: 3 ILLTGQTGQLGHVLAQDMQFLGQVICPSHTEMDLMQPDQIRSFIRAIRPDLIINPAAYTA 62 ILLTG GQ+G L + +Q LG V+ + +DL + DQ+R +R ++PDLI+NPAAYTA Sbjct: 9 ILLTGINGQVGFELQRTLQGLGNVVALDRSRLDLSRLDQVRDVVRDLKPDLIVNPAAYTA 68 Query: 63 VDKAESEVSLATRINAEAPMILAQEAQALDAGFIHFSTDYVFDGEKTAPYTERDQPYPSN 122 VD+AE++V++ATR+NAEAP +LA+EA+ + A IH+STDYVF G K PY E D P N Sbjct: 69 VDQAETDVAMATRLNAEAPAVLAEEAKRIGAALIHYSTDYVFSGTKAGPYVEDDAVDPQN 128 Query: 123 IYGKTKLEGEQAIAEQSDAYWIFRTSWVYGAHGSNFLKTIVRLAQERESLHVVADQIGAP 182 +YG+TKL+GE+AIA A+ IFRTSWVYG G NFL T++RL ER+ L VVADQIGAP Sbjct: 129 VYGRTKLDGERAIAASGCAHLIFRTSWVYGTRGKNFLLTMLRLGAERDELKVVADQIGAP 188 Query: 183 TWTKTISQTLQQCLRQRP--ENISLTAYLRENTGIYHLTADGETSWHGYAQHIVRQLAAL 240 TW+ TI+ L Q + A+ RE +GIYHL A G TSWHG+A+ I Sbjct: 189 TWSNTIATLTAHILAQAAGVSDADRHAWWRERSGIYHLCASGSTSWHGFAEAI------F 242 Query: 241 DFQLSLKTNAILEVATSGHPSAARRPANSRLNTNKIREKFNIALPLWHEAVDQCLTE 297 D ++ + + S +P+ A RPANSR++ K+ F I P WH+A+ C+ E Sbjct: 243 DSSRLVRKPKVKPIPASAYPTPAARPANSRMSGAKLSRTFGICAPDWHDALRMCMAE 299 >ref|ZP_06846045.1| dTDP-4-dehydrorhamnose reductase [Burkholderia sp. Ch1-1] gb|EFG66321.1| dTDP-4-dehydrorhamnose reductase [Burkholderia sp. Ch1-1] Length = 299 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 147/295 (49%), Positives = 191/295 (64%), Gaps = 8/295 (2%) Query: 3 ILLTGQTGQLGHVLAQDMQFLGQVICPSHTEMDLMQPDQIRSFIRAIRPDLIINPAAYTA 62 ILLTG GQ+G LA+ +Q LG V+ MD+ PD++R+ +R IRP LI+NPAAYTA Sbjct: 10 ILLTGVNGQVGFELARTLQGLGTVVAVDRAAMDMSDPDRVRAVVRNIRPALIVNPAAYTA 69 Query: 63 VDKAESEVSLATRINAEAPMILAQEAQALDAGFIHFSTDYVFDGEKTAPYTERDQPYPSN 122 VDKAE E+ LA RIN E P +LA+EA+ L A +H+STDYVF+GEK PY E D P N Sbjct: 70 VDKAEEELDLAMRINGEMPGVLAEEAKKLGAALVHYSTDYVFNGEKDCPYVEDDPTDPQN 129 Query: 123 IYGKTKLEGEQAIAEQSDAYWIFRTSWVYGAHGSNFLKTIVRLAQERESLHVVADQIGAP 182 +YG+TKL GEQAIA A+ IFRTSWVYG G NFL T++RL ERE L VVADQIGAP Sbjct: 130 VYGRTKLAGEQAIAASGCAHLIFRTSWVYGTRGKNFLLTMLRLGAEREELSVVADQIGAP 189 Query: 183 TWTKTISQTLQQCLRQRPENISLTAYLRENTGIYHLTADGETSWHGYAQHIVRQLAALDF 242 TW+ TI+ L Q + ++++G+YHLTA G TSWHG+AQ I D Sbjct: 190 TWSNTIATLTSNVLAQAVGGSD--DWWKQSSGVYHLTASGATSWHGFAQAI------FDN 241 Query: 243 QLSLKTNAILEVATSGHPSAARRPANSRLNTNKIREKFNIALPLWHEAVDQCLTE 297 K + + + +P+ A RPANSR++++K+ F + P W EA+ C+ E Sbjct: 242 SKLPKKPTVKPIPAASYPTPAARPANSRMSSDKLFSTFGVRAPKWDEALLLCMAE 296