BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0051.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751038.1| tRNA(cytosine32)-2-thiocytidine synthetase [... 533 e-149 ref|YP_001355128.1| hypothetical protein mma_3438 [Janthinobacte... 526 e-147 ref|YP_001101421.1| C32 tRNA thiolase [Herminiimonas arsenicoxyd... 515 e-144 ref|ZP_08273768.1| tRNA(Cytosine32)-2-thiocytidine synthetase [O... 505 e-141 ref|ZP_02887198.1| PP-loop domain protein [Burkholderia graminis... 481 e-134 >ref|YP_004751038.1| tRNA(cytosine32)-2-thiocytidine synthetase [Collimonas fungivorans Ter331] gb|AEK60215.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Collimonas fungivorans Ter331] Length = 325 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 249/286 (87%), Positives = 271/286 (94%) Query: 21 PSVKQAEKLAYENNKLHKRLCRLTGQAIGDYNMIEDGDKVMVCLSGGKDSYALLDILLTL 80 PS K EK+A+ENNKLHKRLCR GQAIGD+NMIEDGDKVMVCLSGGKDSYALLDIL+TL Sbjct: 28 PSQKSVEKIAHENNKLHKRLCRQVGQAIGDFNMIEDGDKVMVCLSGGKDSYALLDILMTL 87 Query: 81 RERAPIHFDIIAVNLDQKQPNFPADILPAYLEKLGVAYHIENQDTYSIVKRVVPEGKTTC 140 RERAPI+F+I+AVNLDQKQPNFP ILPAYLEKLGVAYHIENQDTYSIVKR++PEGKTTC Sbjct: 88 RERAPINFEIVAVNLDQKQPNFPDHILPAYLEKLGVAYHIENQDTYSIVKRLIPEGKTTC 147 Query: 141 ALCSRLRRGILYRVATELGATKIALGHHRDDILETFFLNMFFGGKLKGMPPKLQSDDGKQ 200 +LCSRLRRGILYRVATELGATK+ALGHHRDDI+ETFFLNMFFGGKLK MP KLQSDDGKQ Sbjct: 148 SLCSRLRRGILYRVATELGATKVALGHHRDDIMETFFLNMFFGGKLKSMPAKLQSDDGKQ 207 Query: 201 IVIRPLAYVKEADLTRYAEVKEFPIIPCDLCGSQENLQRKQIKGLMREWEKKFPGRVDNI 260 IVIRPLAYVKEADL+RYAEVK+FPIIPCDLCGSQENLQRKQIKG++REWEKKFPGRV+NI Sbjct: 208 IVIRPLAYVKEADLSRYAEVKQFPIIPCDLCGSQENLQRKQIKGMLREWEKKFPGRVENI 267 Query: 261 FASFSTVAPSHLMDRKLFDFANLKATGEADANGDIAFDEDPCATGA 306 F+S STVAPSHLMDR LF FA+LKA+G AD NGDIAFD+DPC+T A Sbjct: 268 FSSLSTVAPSHLMDRNLFGFADLKASGIADPNGDIAFDDDPCSTPA 313 >ref|YP_001355128.1| hypothetical protein mma_3438 [Janthinobacterium sp. Marseille] sp|A6T3N1.1|TTCA_JANMA RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA gb|ABR89873.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 317 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 246/298 (82%), Positives = 270/298 (90%) Query: 22 SVKQAEKLAYENNKLHKRLCRLTGQAIGDYNMIEDGDKVMVCLSGGKDSYALLDILLTLR 81 S KQ EK+ YENNKLHKRLCR GQAIGD+NMIEDGDKVMVCLSGGKDSYALLDIL+TLR Sbjct: 20 SFKQNEKIVYENNKLHKRLCRQVGQAIGDFNMIEDGDKVMVCLSGGKDSYALLDILMTLR 79 Query: 82 ERAPIHFDIIAVNLDQKQPNFPADILPAYLEKLGVAYHIENQDTYSIVKRVVPEGKTTCA 141 ERAPI FDI+AVNLDQKQPNFP ILPAYL++L + +HIENQDTYSIVKR++PEGKTTC+ Sbjct: 80 ERAPIKFDIVAVNLDQKQPNFPDHILPAYLKQLDIPFHIENQDTYSIVKRLIPEGKTTCS 139 Query: 142 LCSRLRRGILYRVATELGATKIALGHHRDDILETFFLNMFFGGKLKGMPPKLQSDDGKQI 201 LCSRLRRGILYRVA ELGA KIALGHHRDDI+ETFFLNMFFG K+KGMPPKLQSDDGK I Sbjct: 140 LCSRLRRGILYRVADELGANKIALGHHRDDIMETFFLNMFFGAKIKGMPPKLQSDDGKHI 199 Query: 202 VIRPLAYVKEADLTRYAEVKEFPIIPCDLCGSQENLQRKQIKGLMREWEKKFPGRVDNIF 261 VIRPLAYVKEAD RYAEVK FPIIPCDLCGSQENLQRKQIKG++REWEKKFPGRVDNIF Sbjct: 200 VIRPLAYVKEADTERYAEVKNFPIIPCDLCGSQENLQRKQIKGMLREWEKKFPGRVDNIF 259 Query: 262 ASFSTVAPSHLMDRKLFDFANLKATGEADANGDIAFDEDPCATGAPAGQNVIKLHVDD 319 +S STV PSHLMD++LF FA+LKATGEA ANGDIAFDE+PC+TG+ + +I L DD Sbjct: 260 SSLSTVVPSHLMDKELFGFADLKATGEAMANGDIAFDEEPCSTGSTSIPGIIPLRADD 317 >ref|YP_001101421.1| C32 tRNA thiolase [Herminiimonas arsenicoxydans] sp|A4G9W3.1|TTCA_HERAR RecName: Full=tRNA 2-thiocytidine biosynthesis protein TtcA emb|CAL63300.1| putative ATPase [Herminiimonas arsenicoxydans] Length = 318 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 244/308 (79%), Positives = 271/308 (87%), Gaps = 3/308 (0%) Query: 14 AAPAE--AIPSVKQAEKLAYENNKLHKRLCRLTGQAIGDYNMIEDGDKVMVCLSGGKDSY 71 +APAE A S KQ EK+ YENNKLHKRLCR GQAIGD+NMIEDGDK+MVCLSGGKDSY Sbjct: 12 SAPAETAAALSFKQGEKIVYENNKLHKRLCRQVGQAIGDFNMIEDGDKIMVCLSGGKDSY 71 Query: 72 ALLDILLTLRERAPIHFDIIAVNLDQKQPNFPADILPAYLEKLGVAYHIENQDTYSIVKR 131 ALLDIL+TLRERAPI FDI+AVNLDQKQPNFP ILPAYL++L + +HIENQDTYSIVKR Sbjct: 72 ALLDILMTLRERAPIKFDIVAVNLDQKQPNFPEHILPAYLKQLDIPFHIENQDTYSIVKR 131 Query: 132 VVPEGKTTCALCSRLRRGILYRVATELGATKIALGHHRDDILETFFLNMFFGGKLKGMPP 191 ++PEGKTTC+LCSRLRRGILYRVA ELGATKIALGHHRDDI+ETFFLNMFFG K+KGMPP Sbjct: 132 LIPEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDDIMETFFLNMFFGAKIKGMPP 191 Query: 192 KLQSDDGKQIVIRPLAYVKEADLTRYAEVKEFPIIPCDLCGSQENLQRKQIKGLMREWEK 251 KLQSDDGK IVIRPLAYVKEAD RYA++K FPIIPCDLCGSQENLQRKQIK ++REWEK Sbjct: 192 KLQSDDGKHIVIRPLAYVKEADTERYAQIKNFPIIPCDLCGSQENLQRKQIKNMLREWEK 251 Query: 252 KFPGRVDNIFASFSTVAPSHLMDRKLFDFANLKATGEADANGDIAFDEDPCATGAPAGQN 311 K PGRVDNIF+S STV PSHLMD LF FA+L+ATG A NGDIAFDE+PC+TG+ + Sbjct: 252 KHPGRVDNIFSSLSTVVPSHLMDSNLFGFADLQATGVAMPNGDIAFDEEPCSTGSTIS-S 310 Query: 312 VIKLHVDD 319 VI L +D Sbjct: 311 VIPLRTED 318 >ref|ZP_08273768.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32764.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Oxalobacteraceae bacterium IMCC9480] Length = 315 Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/297 (79%), Positives = 262/297 (88%) Query: 8 AKLADSAAPAEAIPSVKQAEKLAYENNKLHKRLCRLTGQAIGDYNMIEDGDKVMVCLSGG 67 + ++D+A + S +Q EK+ YENNKLHKRLCR GQAIGD+NMIE+GDKVMVCLSGG Sbjct: 4 STMSDTATESADALSARQREKITYENNKLHKRLCRQVGQAIGDFNMIEEGDKVMVCLSGG 63 Query: 68 KDSYALLDILLTLRERAPIHFDIIAVNLDQKQPNFPADILPAYLEKLGVAYHIENQDTYS 127 KDSYALLDIL+TLRERAPI+F++IAVNLDQKQPNFP ILPAYL LGVA+HIENQDTYS Sbjct: 64 KDSYALLDILMTLRERAPINFELIAVNLDQKQPNFPEHILPAYLTDLGVAFHIENQDTYS 123 Query: 128 IVKRVVPEGKTTCALCSRLRRGILYRVATELGATKIALGHHRDDILETFFLNMFFGGKLK 187 IVKRV+ EGKTTC+LCSRLRRGILYRVA ELGATKIALGHHRDDILETFFLNMFFGGKLK Sbjct: 124 IVKRVIAEGKTTCSLCSRLRRGILYRVADELGATKIALGHHRDDILETFFLNMFFGGKLK 183 Query: 188 GMPPKLQSDDGKQIVIRPLAYVKEADLTRYAEVKEFPIIPCDLCGSQENLQRKQIKGLMR 247 MPPKLQSDDGK IVIRPLAYVKEAD RYAEVK FPIIPCDLCGSQENLQRKQ+K ++R Sbjct: 184 SMPPKLQSDDGKHIVIRPLAYVKEADTERYAEVKNFPIIPCDLCGSQENLQRKQLKNMLR 243 Query: 248 EWEKKFPGRVDNIFASFSTVAPSHLMDRKLFDFANLKATGEADANGDIAFDEDPCAT 304 +W+KK PGR DNIFA+ STVAPSHLMDRKLFDFA L TG +GDIAFD++PCA Sbjct: 244 DWDKKNPGRTDNIFAALSTVAPSHLMDRKLFDFAGLAVTGAPVVDGDIAFDDEPCAV 300 >ref|ZP_02887198.1| PP-loop domain protein [Burkholderia graminis C4D1M] gb|EDT07244.1| PP-loop domain protein [Burkholderia graminis C4D1M] Length = 324 Score = 481 bits (1239), Expect = e-134, Method: Compositional matrix adjust. Identities = 225/307 (73%), Positives = 266/307 (86%), Gaps = 6/307 (1%) Query: 9 KLADSAAPA--EAIPSVKQAEKLAYENNKLHKRLCRLTGQAIGDYNMIEDGDKVMVCLSG 66 ++ D+AAPA E P ++ +K AYENNKL KRL RL GQAIGD+NMIE+GDKVMVCLSG Sbjct: 5 EIMDAAAPAAREKSPLTRREQKEAYENNKLFKRLARLVGQAIGDFNMIENGDKVMVCLSG 64 Query: 67 GKDSYALLDILLTLRERAPIHFDIIAVNLDQKQPNFPADILPAYLEKLGVAYHIENQDTY 126 GKDSYA+LD+L+ LRERAPI+FDI+AVNLDQKQP FP +LP YL++L + +HIENQDTY Sbjct: 65 GKDSYAMLDVLMRLRERAPINFDIVAVNLDQKQPGFPEHVLPEYLKQLDIPFHIENQDTY 124 Query: 127 SIVKRVVPEGKTTCALCSRLRRGILYRVATELGATKIALGHHRDDILETFFLNMFFGGKL 186 SIVKR+VPEGKTTC+LCSRLRRGILYRVA ELGATKIALGHHRDDIL+T LNMF+GGKL Sbjct: 125 SIVKRLVPEGKTTCSLCSRLRRGILYRVAGELGATKIALGHHRDDILQTLLLNMFYGGKL 184 Query: 187 KGMPPKLQSDDGKQIVIRPLAYVKEADLTRYAEVKEFPIIPCDLCGSQENLQRKQIKGLM 246 KGMPPKLQSDDGK IVIRPLAYVKE DL +YAE++EFPIIPC+LCGSQ NL+R ++K L+ Sbjct: 185 KGMPPKLQSDDGKNIVIRPLAYVKETDLEKYAELREFPIIPCNLCGSQPNLKRAEMKALI 244 Query: 247 REWEKKFPGRVDNIFASFSTVAPSHLMDRKLFDFANLKATGEADANGDIAFDEDPCAT-- 304 R+WEK+FPGR++N+F + + V PSHLMD KLF FA+L+ATGEAD GDIAFDE+PC+T Sbjct: 245 RDWEKRFPGRIENMFNALTNVVPSHLMDHKLFPFADLRATGEADPQGDIAFDEEPCSTDA 304 Query: 305 --GAPAG 309 GAP G Sbjct: 305 SDGAPLG 311