BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0046.p         (191 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777772.1| two component response regulator protein [He...   191   4e-47
ref|YP_004753958.1| two-component system response regulator QseB...   171   3e-41
ref|YP_004030071.1| transcriptional regulatory protein qseB [Bur...   159   1e-37
ref|ZP_08325078.1| transcriptional regulatory protein QseB [Para...   159   2e-37
ref|ZP_07342427.1| DNA-binding response regulator [Burkholderial...   159   3e-37

>ref|YP_003777772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 105/114 (92%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MR+LLVEDD MVGEA RKGLRQDGFA+DWVQDG +A +ALR EDYA++LLDLGLPQK+GL
Sbjct: 1   MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
           AVL+ LR  GN +PVLITTARDAVADRVAGLDAGADDYLIKP+DLEELSARMRA
Sbjct: 61  AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRA 114


>ref|YP_004753958.1| two-component system response regulator QseB [Collimonas
           fungivorans Ter331]
 gb|AEK63135.1| Two-component system response regulator QseB [Collimonas
           fungivorans Ter331]
          Length = 218

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 104/114 (91%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MR+LLVEDDLMVGEA RKGLRQDGFAVDWVQDGAAA  AL QEDY L+LLDLGLP+KNGL
Sbjct: 1   MRLLLVEDDLMVGEAVRKGLRQDGFAVDWVQDGAAALSALAQEDYQLLLLDLGLPKKNGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            VL+ LRA GN++PVLI TARDA++DRVAGLD GADDYL+KP+DLEEL+AR+RA
Sbjct: 61  EVLKSLRAGGNRIPVLIMTARDAISDRVAGLDGGADDYLVKPFDLEELAARIRA 114


>ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
 emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica
           HKI 454]
          Length = 333

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 93/114 (81%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MR+LLVEDD M+ E  RK LR DG+AVDWVQDGAAA LA   E Y L+LLDLGLPQ++GL
Sbjct: 115 MRVLLVEDDSMIAEGVRKALRADGWAVDWVQDGAAAILAADGEPYDLMLLDLGLPQRDGL 174

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
            VL+ +RA  +  PVLI TARDAVADRV GLDAGADDYL+KP+DL+EL ARMRA
Sbjct: 175 DVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRA 228


>ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
 gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella
           excrementihominis YIT 11859]
          Length = 227

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILLVEDD M+GEA   GL+ +G+AVDWV+DG +A +AL    ++LV+LDLGLP K+GL
Sbjct: 10  MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 69

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
           AVL+E+R   N  PVL+TTARD V DR+ GLDAGADDYLIKPYDL+ELSAR+RA
Sbjct: 70  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRA 123


>ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
 gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
          Length = 218

 Score =  159 bits (401), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%)

Query: 1   MRILLVEDDLMVGEAARKGLRQDGFAVDWVQDGAAAALALRQEDYALVLLDLGLPQKNGL 60
           MRILLVEDD M+GEA   GL+ +G+AVDWV+DG +A +AL    ++LV+LDLGLP K+GL
Sbjct: 1   MRILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGL 60

Query: 61  AVLQELRAAGNKVPVLITTARDAVADRVAGLDAGADDYLIKPYDLEELSARMRA 114
           AVL+E+R   N  PVL+TTARD V DR+ GLDAGADDYLIKPYDL+ELSAR+RA
Sbjct: 61  AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRA 114