BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0045.p         (50 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003777772.1| two component response regulator protein [He...    98   5e-19
ref|YP_004753958.1| two-component system response regulator QseB...    92   3e-17
ref|YP_004154879.1| winged helix family two component transcript...    86   2e-15
ref|YP_002944277.1| winged helix family two component transcript...    83   1e-14
gb|EGP44992.1| transcriptional regulator QseB 1 [Achromobacter x...    82   2e-14

>ref|YP_003777772.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65864.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 218

 Score = 97.8 bits (242), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 43/49 (87%), Positives = 48/49 (97%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVP 49
           LSRAQLEEKLYGWDD ++SNA+EVHIHALRKK+GSDFIKNVRG+GYLVP
Sbjct: 169 LSRAQLEEKLYGWDDSIESNAVEVHIHALRKKVGSDFIKNVRGVGYLVP 217


>ref|YP_004753958.1| two-component system response regulator QseB [Collimonas
           fungivorans Ter331]
 gb|AEK63135.1| Two-component system response regulator QseB [Collimonas
           fungivorans Ter331]
          Length = 218

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 48/50 (96%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRAQLEEK+YGWDD ++SNA+EV+IHALRKKLGS+FIKNVRGIGY+V K
Sbjct: 169 LSRAQLEEKMYGWDDSIESNAVEVYIHALRKKLGSNFIKNVRGIGYMVAK 218


>ref|YP_004154879.1| winged helix family two component transcriptional regulator
           [Variovorax paradoxus EPS]
 gb|ADU36768.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus EPS]
          Length = 219

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 45/50 (90%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRAQLEEKLY W D + SNA+EV++H LRKKLG++FI+NVRG+GY+VPK
Sbjct: 169 LSRAQLEEKLYSWKDEISSNAVEVYVHGLRKKLGAEFIRNVRGVGYMVPK 218


>ref|YP_002944277.1| winged helix family two component transcriptional regulator
           [Variovorax paradoxus S110]
 gb|ACS19011.1| two component transcriptional regulator, winged helix family
           [Variovorax paradoxus S110]
          Length = 219

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/50 (70%), Positives = 44/50 (88%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
           LSRAQLEEKLY W D + SNA+EV++H LRKKLG++ I+NVRG+GY+VPK
Sbjct: 169 LSRAQLEEKLYSWKDEISSNAVEVYVHGLRKKLGAELIRNVRGVGYMVPK 218


>gb|EGP44992.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans AXX-A]
          Length = 219

 Score = 82.0 bits (201), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 42/50 (84%)

Query: 1   LSRAQLEEKLYGWDDGVDSNAIEVHIHALRKKLGSDFIKNVRGIGYLVPK 50
            SRAQLEEKLY W D V SNA+EV+IH LRKKLG D I+NVRG+GY++PK
Sbjct: 169 FSRAQLEEKLYSWKDSVSSNAVEVYIHGLRKKLGQDLIQNVRGVGYVIPK 218