BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0044.p (195 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777771.1| transmembrane sensor histidine kinase [Herba... 226 2e-57 ref|YP_004753959.1| sensory histidine kinase QseC [Collimonas fu... 204 8e-51 ref|ZP_08272866.1| Sensory histidine kinase QseC [Oxalobacterace... 154 9e-36 ref|ZP_02888707.1| integral membrane sensor signal transduction ... 144 6e-33 ref|YP_001809230.1| integral membrane sensor signal transduction... 144 7e-33 >ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ65863.1| transmembrane sensor histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 444 Score = 226 bits (575), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 115/151 (76%), Positives = 132/151 (87%) Query: 12 ILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLDDEIMMQIWDST 71 I+LAG+ALYFQARGEAN+IFDYQMRQIAASLPRQAF+PI+PGQ P L+DEIMMQIWDS Sbjct: 20 IVLAGVALYFQARGEANQIFDYQMRQIAASLPRQAFSPISPGQQFPELEDEIMMQIWDSR 79 Query: 72 GTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQSARKQVAAQAA 131 G VIYHSH+R MP+QAELGFA+V GP GMWRVYSAQIG+TV QV+QPQSAR ++AAQ A Sbjct: 80 GAVIYHSHARGAMPRQAELGFANVSGPNGMWRVYSAQIGSTVVQVAQPQSARDEIAAQMA 139 Query: 132 VKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162 VKTV+PLLLLFP +G L W+AV LAPV + Sbjct: 140 VKTVVPLLLLFPLIGVLSWVAVSRGLAPVRK 170 >ref|YP_004753959.1| sensory histidine kinase QseC [Collimonas fungivorans Ter331] gb|AEK63136.1| Sensory histidine kinase QseC [Collimonas fungivorans Ter331] Length = 437 Score = 204 bits (518), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 114/170 (67%), Positives = 131/170 (77%), Gaps = 3/170 (1%) Query: 12 ILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDA-PGLDDEIMMQIWDS 70 IL+AGIALYFQARGEANE+FDYQMRQI ASLPRQAF+P+ D P LDD+IM+QIWD+ Sbjct: 23 ILVAGIALYFQARGEANELFDYQMRQIVASLPRQAFSPMTENGDGGPELDDQIMIQIWDN 82 Query: 71 TGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQSARKQVAAQA 130 TG VIYHSH ++ +P QAELGF +V G+WRVYSAQIGNTV Q++QPQSAR Q+AAQ Sbjct: 83 TGVVIYHSHGQASLPPQAELGFTNVRQSNGLWRVYSAQIGNTVVQIAQPQSARNQIAAQM 142 Query: 131 AVKTVMPLLLLFPFLGALIWIAVGHALAPVXRNWPSAPATTKSAARLSPI 180 AVKTV PLLLLFP LG LIW+AV LAP+ R A A LSPI Sbjct: 143 AVKTVTPLLLLFPLLGLLIWVAVSRGLAPIRRAAMEVQARDMHA--LSPI 190 >ref|ZP_08272866.1| Sensory histidine kinase QseC [Oxalobacteraceae bacterium IMCC9480] gb|EGF33660.1| Sensory histidine kinase QseC [Oxalobacteraceae bacterium IMCC9480] Length = 448 Score = 154 bits (388), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 88/189 (46%), Positives = 120/189 (63%), Gaps = 11/189 (5%) Query: 1 LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDA---- 56 L+WLA GL+ I L + L+ QAR EAN +FD+QM+Q+A++LP + + PG A Sbjct: 13 LVWLAAGLAVVISLMALLLFRQARDEANHLFDFQMQQVASALPSRFLSLPEPGTGAVFDA 72 Query: 57 -PGLDDEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQ 115 P +++QIWD TG +Y SH + +PQ A LGFA+V G WRVYSAQ G TV Q Sbjct: 73 APA----VVIQIWDPTGVRLYFSHDVADLPQLAVLGFANVALRGETWRVYSAQQGATVVQ 128 Query: 116 VSQPQSARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXRNWPSAPATTKSAA 175 ++QP AR +AA++A+KT+ PLLLL PFLG LIW+AV LAPV +A + A Sbjct: 129 IAQPLRARSDMAARSALKTIAPLLLLVPFLGGLIWLAVSRGLAPVL--GVAAQLAARDAG 186 Query: 176 RLSPICAMA 184 +L+P+ A Sbjct: 187 QLAPVSDAA 195 >ref|ZP_02888707.1| integral membrane sensor signal transduction histidine kinase [Burkholderia ambifaria IOP40-10] gb|EDT05744.1| integral membrane sensor signal transduction histidine kinase [Burkholderia ambifaria IOP40-10] Length = 445 Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 2/162 (1%) Query: 1 LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLD 60 L+WL + AG+ LAG +Y QA EANE+FDYQ+++IAA+LP + F+ + G G D Sbjct: 9 LIWLLAIVVAGVGLAGWLIYRQALAEANELFDYQLQEIAAALPSEPFSQVF-GSRTNG-D 66 Query: 61 DEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQ 120 + I++QIW+ G ++Y SH R+ + +AELGF+ G WRVY A +G+ V Q++QP Sbjct: 67 EGIVIQIWNRNGVLMYFSHPRAPIAPRAELGFSTERTDRGEWRVYGAIVGDNVVQLAQPL 126 Query: 121 SARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162 S R ++AA A++T+ PL++L PFLGA +W+ VG LAP+ R Sbjct: 127 SVRNRLAANVALRTLWPLIVLLPFLGAAVWMIVGRGLAPLAR 168 >ref|YP_001809230.1| integral membrane sensor signal transduction histidine kinase [Burkholderia ambifaria MC40-6] gb|ACB65014.1| integral membrane sensor signal transduction histidine kinase [Burkholderia ambifaria MC40-6] Length = 445 Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 74/162 (45%), Positives = 110/162 (67%), Gaps = 2/162 (1%) Query: 1 LLWLALGLSAGILLAGIALYFQARGEANEIFDYQMRQIAASLPRQAFAPIAPGQDAPGLD 60 L+WL + AG+ LAG +Y QA EANE+FDYQ+++IAA+LP + F+ + G G D Sbjct: 9 LIWLLAIVVAGVGLAGWLIYRQALAEANELFDYQLQEIAAALPSEPFSQVF-GSRTNG-D 66 Query: 61 DEIMMQIWDSTGTVIYHSHSRSVMPQQAELGFADVPGPGGMWRVYSAQIGNTVAQVSQPQ 120 + I++QIW+ G ++Y SH R+ + +AELGF+ G WRVY A +G+ V Q++QP Sbjct: 67 EGIVIQIWNRNGVLMYFSHPRAPIAPRAELGFSTERTDRGEWRVYGAIVGDNVVQLAQPL 126 Query: 121 SARKQVAAQAAVKTVMPLLLLFPFLGALIWIAVGHALAPVXR 162 S R ++AA A++T+ PL++L PFLGA +W+ VG LAP+ R Sbjct: 127 SVRNRLAANVALRTLWPLIVLLPFLGAAVWMIVGRGLAPLAR 168