BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0042.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777770.1| periplasmic trypsin-like serine endoprotease... 695 0.0 ref|YP_004753961.1| putative periplasmic serine protease [Collim... 660 0.0 ref|YP_299750.1| peptidase S1C, Do [Ralstonia eutropha JMP134] >... 590 e-166 ref|YP_001796606.1| periplasmic protease [Cupriavidus taiwanensi... 585 e-165 ref|YP_585761.1| endopeptidase [Cupriavidus metallidurans CH34] ... 581 e-164 >ref|YP_003777770.1| periplasmic trypsin-like serine endoprotease [Herbaspirillum seropedicae SmR1] gb|ADJ65862.1| periplasmic trypsin-like serine endoprotease protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/433 (80%), Positives = 395/433 (91%), Gaps = 2/433 (0%) Query: 5 TDFSGIVERAGPAVVNISVTGKAKRVSDDASDDVDPNDPFSEFFKRFGPQFQQPPRTPQI 64 TDFSGIV+R GPAVVNISVTGKA++V+DD + +DPNDPFSEFFKRFGPQ Q P + P+I Sbjct: 63 TDFSGIVQRYGPAVVNISVTGKARKVADDDDNGLDPNDPFSEFFKRFGPQLQMP-QQPRI 121 Query: 65 MRGLGSGFIISPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGADKQSDIAVIRIAAK 124 M GLGSGFIISPDGLILTNAHVVDGAQEV VKLTDRREFKAKVLG DKQSDIAVIRI AK Sbjct: 122 MHGLGSGFIISPDGLILTNAHVVDGAQEVVVKLTDRREFKAKVLGIDKQSDIAVIRIDAK 181 Query: 125 DLPTVQIGNPALMKVGEPVLAIGSPYGFDNTATAGIVSAKSRALPDDNYVPFIQTDVAVN 184 +LPTVQIG+P+ +KVG+PVLAIGSPYGFDNTATAGI+SAKSR+LPDDNYVPFIQTDVAVN Sbjct: 182 NLPTVQIGDPSRVKVGQPVLAIGSPYGFDNTATAGIISAKSRSLPDDNYVPFIQTDVAVN 241 Query: 185 PGNSGGPLFNLKGQVVGINSQIYSQTGGYQGLSFSIPIDVAMKVEQQLVQHGKVTRGRLG 244 PGNSGGPLF+L GQV+GINSQIYSQTGG+QGLSFSIPIDVAMKVEQQLV HGKVTRGRLG Sbjct: 242 PGNSGGPLFDLNGQVIGINSQIYSQTGGFQGLSFSIPIDVAMKVEQQLVTHGKVTRGRLG 301 Query: 245 VSVQEINQALAESFGLKKSEGALVSSVEKGSPAEKAGVQAGDVILRFNGQAIDHSVDLPT 304 VSVQ++NQAL++SFGLKK+EGALVSSVEKGSPA+KAG+QAGDVI+ FNG AIDHSVDLPT Sbjct: 302 VSVQDLNQALSDSFGLKKAEGALVSSVEKGSPADKAGLQAGDVIISFNGHAIDHSVDLPT 361 Query: 305 LVADTAPGTTQKIEVMRNGALKSLNITVGELKPTK-EAAASRNEPQGRLGLAVRPLDKSE 363 LVADT PG+T+ +EVMR G ++++N+TVGE+K K +A AS+++ QGRLGLAVRPLDK E Sbjct: 362 LVADTPPGSTKPMEVMRAGKVRTINVTVGEMKQAKNDAKASKSDDQGRLGLAVRPLDKDE 421 Query: 364 QQQIGVHGGLLVEDVNGPAAVAGIQSGDVILSLNGNAVTSVEQLRSLVSKAGKSVALLVE 423 Q Q+G GLLVEDV+GPAAVAGIQSGDVIL++NG V+SV QLR L + AGK+VALLVE Sbjct: 422 QAQLGGQKGLLVEDVSGPAAVAGIQSGDVILAVNGTPVSSVAQLRKLATDAGKNVALLVE 481 Query: 424 RGDDKIFVPVYLN 436 RGD+KIFVP+ LN Sbjct: 482 RGDEKIFVPLALN 494 >ref|YP_004753961.1| putative periplasmic serine protease [Collimonas fungivorans Ter331] gb|AEK63138.1| putative periplasmic serine protease [Collimonas fungivorans Ter331] Length = 507 Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/437 (76%), Positives = 375/437 (85%), Gaps = 3/437 (0%) Query: 1 LATPTDFSGIVERAGPAVVNISVTGKAKRVS-DDASDDVDPNDPFSEFFKRFGPQFQQPP 59 +A TDFSGIVERAGPAVVNISVTGKAK+ + D D++DPNDPFS+FFKRFGPQ Q P Sbjct: 71 VAVATDFSGIVERAGPAVVNISVTGKAKQSAVSDQDDELDPNDPFSQFFKRFGPQLQIP- 129 Query: 60 RTPQIMRGLGSGFIISPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGADKQSDIAVI 119 R PQIMRG GSGFIIS DGLILTNAHVV+GA EVTVKLTDRREF+AKVLG+DKQSDIAVI Sbjct: 130 RHPQIMRGEGSGFIISADGLILTNAHVVEGASEVTVKLTDRREFRAKVLGSDKQSDIAVI 189 Query: 120 RIAAKDLPTVQIGNPALMKVGEPVLAIGSPYGFDNTATAGIVSAKSRALPDDNYVPFIQT 179 RI AK+LP VQIGNPAL +VGEPVLAIGSPYGF+NTATAGIVSAKSR+LPDD YVPFIQT Sbjct: 190 RIDAKNLPIVQIGNPALTRVGEPVLAIGSPYGFENTATAGIVSAKSRSLPDDTYVPFIQT 249 Query: 180 DVAVNPGNSGGPLFNLKGQVVGINSQIYSQTGGYQGLSFSIPIDVAMKVEQQLVQHGKVT 239 DVAVNPGNSGGPLFN+KG+V+GINSQIYSQTGGYQGLSF+IPIDVA KVEQQLV+HGKVT Sbjct: 250 DVAVNPGNSGGPLFNIKGEVIGINSQIYSQTGGYQGLSFAIPIDVATKVEQQLVKHGKVT 309 Query: 240 RGRLGVSVQEINQALAESFGLKKSEGALVSSVEKGSPAEKAGVQAGDVILRFNGQAIDHS 299 R LGVSVQE+NQALAESFGLK + GALVSSV+KGSPA+K G+Q GDVILRFNGQ I HS Sbjct: 310 RSHLGVSVQEVNQALAESFGLKSAAGALVSSVDKGSPADKGGLQTGDVILRFNGQPISHS 369 Query: 300 VDLPTLVADTAPGTTQKIEVMRNGALKSLNITVGELKPTKEAAASRNE-PQGRLGLAVRP 358 DLP+LVADTAPGT IEV+RNG K+L + E + K A+ Q RLGLA+R Sbjct: 370 SDLPSLVADTAPGTASTIEVVRNGQPKTLTVKPTEAEAVKTASNDEGAGSQARLGLALRQ 429 Query: 359 LDKSEQQQIGVHGGLLVEDVNGPAAVAGIQSGDVILSLNGNAVTSVEQLRSLVSKAGKSV 418 L EQQQ+G+HGGL+VED +GP+A+AGIQ GDVILSLNG V SVEQLR LVSKAGK+V Sbjct: 430 LSPDEQQQVGIHGGLVVEDASGPSALAGIQRGDVILSLNGKPVNSVEQLRQLVSKAGKNV 489 Query: 419 ALLVERGDDKIFVPVYL 435 ALLV+R DKIFVP+ L Sbjct: 490 ALLVQRDKDKIFVPLNL 506 >ref|YP_299750.1| peptidase S1C, Do [Ralstonia eutropha JMP134] gb|AAZ64906.1| Peptidase S1C, Do [Ralstonia eutropha JMP134] Length = 488 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 302/436 (69%), Positives = 360/436 (82%), Gaps = 5/436 (1%) Query: 3 TPTDFSGIVERAGPAVVNISVTGKAKRVSDDASDDVDPNDPFSEFFKRFGPQFQQPPRTP 62 TP DFSGIV++ GPAVVNISVT +A+R + A +DP+DP +FFKRFGPQFQ P Sbjct: 54 TPMDFSGIVDQYGPAVVNISVTARAQRTAMQAPSGMDPDDPLFQFFKRFGPQFQGPQSGQ 113 Query: 63 QIMRGLGSGFIISPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGADKQSDIAVIRIA 122 Q+++GLGSGFI+SPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLG D Q+D+AVIRI Sbjct: 114 QLVKGLGSGFIVSPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGTDPQTDVAVIRID 173 Query: 123 AKDLPTVQIGNPALMKVGEPVLAIGSPYGFDNTATAGIVSAKSRALPDDNYVPFIQTDVA 182 AKDLPTV++G+PA +KVGEPVLAIGSPYGF+NT TAGIVSAKSR+LPDD YVPFIQTDVA Sbjct: 174 AKDLPTVRLGDPARVKVGEPVLAIGSPYGFENTVTAGIVSAKSRSLPDDTYVPFIQTDVA 233 Query: 183 VNPGNSGGPLFNLKGQVVGINSQIYSQTGGYQGLSFSIPIDVAMKVEQQLVQHGKVTRGR 242 VNPGNSGGPLFN +G+V+GINSQIYSQTGGYQGLSF+IPI+VA KVEQQLV HGKVTRGR Sbjct: 234 VNPGNSGGPLFNQRGEVIGINSQIYSQTGGYQGLSFAIPINVATKVEQQLVAHGKVTRGR 293 Query: 243 LGVSVQEINQALAESFGLKKSEGALVSSVEKGSPAEKAGVQAGDVILRFNGQAIDHSVDL 302 LG+SVQE+NQALA+SFGL K GALV+SVE SPA KAGV+ GDVI++ + IDHS DL Sbjct: 294 LGISVQEVNQALAQSFGLPKPSGALVNSVEADSPAAKAGVKPGDVIVQLDDDVIDHSGDL 353 Query: 303 PTLVADTAPGTTQKIEVMRNGALKSLNITVGELKPTKEAAASR-NEPQ--GRLGLAVRPL 359 P VAD PGT ++++R G +L + VG K +E+ A + N+ Q GRLGLAVR L Sbjct: 354 PEHVADIKPGTQTTLKIIRKGQPMTLAVKVGAAK--EESVAQKGNDSQAGGRLGLAVRSL 411 Query: 360 DKSEQQQIGVHGGLLVEDVNGPAAVAGIQSGDVILSLNGNAVTSVEQLRSLVSKAGKSVA 419 SE+++ G+ GGL+VEDV GPAA GIQ GDVILSLNG +TS +QLR+LV+K+GK VA Sbjct: 412 TPSERRESGIDGGLVVEDVAGPAARVGIQPGDVILSLNGTPITSADQLRALVAKSGKQVA 471 Query: 420 LLVERGDDKIFVPVYL 435 LLV+R + +IF+P+ L Sbjct: 472 LLVQRDEARIFIPLDL 487 >ref|YP_001796606.1| periplasmic protease [Cupriavidus taiwanensis LMG 19424] emb|CAP63369.1| PERIPLASMIC PROTEASE; contains two PDZ domain [Cupriavidus taiwanensis LMG 19424] Length = 511 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 297/434 (68%), Positives = 353/434 (81%), Gaps = 2/434 (0%) Query: 4 PTDFSGIVERAGPAVVNISVTGKAKRVSDDASDDVDPNDPFSEFFKRFGPQFQQPPR-TP 62 P DFSGIV + GPAVVNISVT +A+R + +DP+DP +FFKRFGPQFQ P Sbjct: 77 PMDFSGIVAQYGPAVVNISVTARAQRTAVQMPPGIDPDDPLFQFFKRFGPQFQGPQGGAQ 136 Query: 63 QIMRGLGSGFIISPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGADKQSDIAVIRIA 122 Q++RG GSGFI+SPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLG D Q+D+AVIRI Sbjct: 137 QLVRGQGSGFIVSPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGTDPQTDVAVIRID 196 Query: 123 AKDLPTVQIGNPALMKVGEPVLAIGSPYGFDNTATAGIVSAKSRALPDDNYVPFIQTDVA 182 A+DLPTV++G+P+ ++VGEPVLAIGSPYGF+NT TAGIVSAKSR+LPDD YVPFIQTDVA Sbjct: 197 ARDLPTVRLGDPSQVRVGEPVLAIGSPYGFENTVTAGIVSAKSRSLPDDTYVPFIQTDVA 256 Query: 183 VNPGNSGGPLFNLKGQVVGINSQIYSQTGGYQGLSFSIPIDVAMKVEQQLVQHGKVTRGR 242 VNPGNSGGPLFN +G+VVGINSQIYSQTGGYQGLSF+IPIDVA KV+QQLV HGKVTRGR Sbjct: 257 VNPGNSGGPLFNQRGEVVGINSQIYSQTGGYQGLSFAIPIDVATKVQQQLVAHGKVTRGR 316 Query: 243 LGVSVQEINQALAESFGLKKSEGALVSSVEKGSPAEKAGVQAGDVILRFNGQAIDHSVDL 302 LG+SVQE+NQALA+SFGL K GALV+SVE SPA +AG++ GDVI++ N IDHS DL Sbjct: 317 LGISVQEVNQALAQSFGLPKPTGALVNSVEPDSPAARAGLKPGDVIVQLNNDVIDHSGDL 376 Query: 303 PTLVADTAPGTTQKIEVMRNGALKSLNITVGELKPTKEA-AASRNEPQGRLGLAVRPLDK 361 P VAD PGT ++++R G +L++TVG + A A E GRLGLAVRPL Sbjct: 377 PEHVADIKPGTQSSLKIIRKGQPMTLSVTVGSARDQAVAQKAGGKEANGRLGLAVRPLSP 436 Query: 362 SEQQQIGVHGGLLVEDVNGPAAVAGIQSGDVILSLNGNAVTSVEQLRSLVSKAGKSVALL 421 +E+++ G+ GGL+VEDV GPAA GIQ GDVILSLNG + SV+QLR+LV K+GK VALL Sbjct: 437 AEKRESGIEGGLVVEDVTGPAARVGIQPGDVILSLNGTPIASVDQLRTLVGKSGKQVALL 496 Query: 422 VERGDDKIFVPVYL 435 V+R D +IF+P+ L Sbjct: 497 VQRDDARIFIPLDL 510 >ref|YP_585761.1| endopeptidase [Cupriavidus metallidurans CH34] gb|ABF10492.1| multifunctional enzyme (serine-type endopeptidase / oxidoreductase) (degP / mucD-like) [Cupriavidus metallidurans CH34] Length = 487 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 300/439 (68%), Positives = 356/439 (81%), Gaps = 6/439 (1%) Query: 1 LATPTDFSGIVERAGPAVVNISVTGKAKRVSDDASDDVDPNDPFSEFFKRFGPQFQQPPR 60 +ATPTDFS IV++ GPAVVNISVT +A+R S VDP+DP +FFKRFGPQFQ P Sbjct: 50 VATPTDFSSIVDQYGPAVVNISVTARAQRTSAQVPQGVDPDDPLFQFFKRFGPQFQGPQN 109 Query: 61 T-PQIMRGLGSGFIISPDGLILTNAHVVDGAQEVTVKLTDRREFKAKVLGADKQSDIAVI 119 PQ++RGLGSGFI+S DGLILTNAHVVD A EVTVKLTDRREFKAKVLG+D Q+DIAVI Sbjct: 110 AQPQLVRGLGSGFIVSQDGLILTNAHVVDNATEVTVKLTDRREFKAKVLGSDPQTDIAVI 169 Query: 120 RIAAKDLPTVQIGNPALMKVGEPVLAIGSPYGFDNTATAGIVSAKSRALPDDNYVPFIQT 179 RI AK+LPTV++G+P+ +VGEPVLAIGSPYGF+NT TAGIVSAKSR+LPDD YVPFIQT Sbjct: 170 RIDAKNLPTVRLGDPSKTRVGEPVLAIGSPYGFENTVTAGIVSAKSRSLPDDTYVPFIQT 229 Query: 180 DVAVNPGNSGGPLFNLKGQVVGINSQIYSQTGGYQGLSFSIPIDVAMKVEQQLVQHGKVT 239 DVAVNPGNSGGPLFN +G+V+GINSQIYSQTGGYQGLSF+IPI+VA KVE+QLV HGKVT Sbjct: 230 DVAVNPGNSGGPLFNQRGEVIGINSQIYSQTGGYQGLSFAIPINVATKVEEQLVAHGKVT 289 Query: 240 RGRLGVSVQEINQALAESFGLKKSEGALVSSVEKGSPAEKAGVQAGDVILRFNGQAIDHS 299 RGRLG+SVQE+NQALA+SF L K GALV+SVE SPA K GV+AGDVI++ IDHS Sbjct: 290 RGRLGISVQEVNQALAQSFNLPKPAGALVNSVEPDSPAAKGGVKAGDVIVQLGDDVIDHS 349 Query: 300 VDLPTLVADTAPGTTQKIEVMRNGALKSLNITVGELKPTKEAAASR---NEPQGRLGLAV 356 DLP VAD PGT K++V+R G +L + VG +K ++A A + + GRLGLAV Sbjct: 350 GDLPEHVADLKPGTETKLKVIRKGQPMTLTVQVGAVK--EDALAQKGNGGQDGGRLGLAV 407 Query: 357 RPLDKSEQQQIGVHGGLLVEDVNGPAAVAGIQSGDVILSLNGNAVTSVEQLRSLVSKAGK 416 R L +E++ G+ GGL+VEDV GPAA GIQ GDVILSLNG ++S EQLR+LVSK+GK Sbjct: 408 RQLTPAEKRDSGIDGGLVVEDVTGPAARVGIQPGDVILSLNGTPISSAEQLRTLVSKSGK 467 Query: 417 SVALLVERGDDKIFVPVYL 435 VALLV+R D +IF+P+ L Sbjct: 468 QVALLVQRDDARIFIPLDL 486