BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0039.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001899292.1| copper resistance D domain-containing protei... 293 3e-77 ref|YP_001899346.1| copper resistance D domain-containing protei... 291 9e-77 ref|ZP_07677917.1| copper resistance protein D [Ralstonia sp. 5_... 289 4e-76 ref|YP_002973581.1| copper resistance D domain protein [Ralstoni... 285 8e-75 ref|YP_001561475.1| copper resistance D domain-containing protei... 280 2e-73 >ref|YP_001899292.1| copper resistance D domain-containing protein [Ralstonia pickettii 12J] ref|YP_002973807.1| copper resistance D domain protein [Ralstonia pickettii 12D] ref|ZP_07677869.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] gb|ACD26860.1| copper resistance D domain protein [Ralstonia pickettii 12J] gb|ACS66563.1| copper resistance D domain protein [Ralstonia pickettii 12D] gb|EFP63712.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] Length = 309 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 155/300 (51%), Positives = 204/300 (68%) Query: 2 TVLVRFALYLDLMLVFGLPLFHLHALRKPERSSMLARKLSTLTASAAIVGMILSAISMVL 61 + +RF LYLDL ++FG+ LF + ALR R++ +AR+ A +G++LS S V+ Sbjct: 7 NIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFVV 66 Query: 62 MTKAMSGAADFSSIEQHMFEMMLTDTPFGLAWCLRMAMLVLSVLAVLFLAQAPTWKFGMM 121 M KAM+GA +++ + H+F MMLT T GLAW R+ L ++AV L + P FG+ Sbjct: 67 MAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVC 126 Query: 122 SLAGGVALATLSWGGHGAMDEGARGQLHLAADIIHLLAAGAWIGALAVFILILALRDGHD 181 + G VAL T++W GHGAMD+G +G LHL DI H+LAAGAW+GALA F+L+ + R Sbjct: 127 AGLGAVALLTVTWAGHGAMDDGVKGYLHLTFDIAHVLAAGAWVGALAAFVLLASTRQAAS 186 Query: 182 ANNVSLLSRTLNGFALVGTLIVGSLLMTGALNYWLIVGPTVTGLFSTPYVQLLIAKLVLF 241 + V +LS T NGFA +GTLIV +L TG NY+LIVGPT+ GLF+TPY +LL+ KL LF Sbjct: 187 SETVEILSHTSNGFARLGTLIVATLFATGTFNYFLIVGPTINGLFTTPYGRLLLIKLALF 246 Query: 242 GMMLALAAANRYRLSPVLERAHVSGKHQEAVAGLRRSLLIETACACLILALVAWLGTLGP 301 +ML LAAANRYRLSP L A + H AV LRRSL++ET+ A LILALVAWLG L P Sbjct: 247 ALMLGLAAANRYRLSPRLAAAVRAADHVHAVIALRRSLVMETSLAILILALVAWLGVLSP 306 >ref|YP_001899346.1| copper resistance D domain-containing protein [Ralstonia pickettii 12J] gb|ACD26914.1| copper resistance D domain protein [Ralstonia pickettii 12J] Length = 309 Score = 291 bits (745), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 156/300 (52%), Positives = 204/300 (68%) Query: 2 TVLVRFALYLDLMLVFGLPLFHLHALRKPERSSMLARKLSTLTASAAIVGMILSAISMVL 61 + +RF LYLDL ++FG+ LF + ALR R++ +AR+ A +G++LS S ++ Sbjct: 7 NIALRFGLYLDLTILFGVSLFGVQALRPDHRATAIARRYVRAVGVTAALGIVLSLWSFIV 66 Query: 62 MTKAMSGAADFSSIEQHMFEMMLTDTPFGLAWCLRMAMLVLSVLAVLFLAQAPTWKFGMM 121 M KAM+GA +++ + H+F MMLT T GLAW R+ L ++AV L + P FG+ Sbjct: 67 MAKAMTGATEYAELTSHVFSMMLTTTAVGLAWMARLVALAGCLVAVARLRKHPAPHFGVC 126 Query: 122 SLAGGVALATLSWGGHGAMDEGARGQLHLAADIIHLLAAGAWIGALAVFILILALRDGHD 181 + G VAL T++W GHGAMD+G +G LHLA DI H+LAAGAW+GAL F+L+ + R Sbjct: 127 AGLGAVALLTVTWAGHGAMDDGVKGYLHLAFDIAHVLAAGAWVGALTAFVLLASTRQAAS 186 Query: 182 ANNVSLLSRTLNGFALVGTLIVGSLLMTGALNYWLIVGPTVTGLFSTPYVQLLIAKLVLF 241 + V +LS T NGFA +GTLIV +LL TG NY LIVGPT+ GLFST Y +LL+ KL LF Sbjct: 187 SEAVEILSHTSNGFARLGTLIVATLLSTGTFNYLLIVGPTINGLFSTLYGRLLLIKLALF 246 Query: 242 GMMLALAAANRYRLSPVLERAHVSGKHQEAVAGLRRSLLIETACACLILALVAWLGTLGP 301 +ML LAAANRYRLSP LE A + H AV LRRSL++ET+ A LILALVAWLG L P Sbjct: 247 ALMLGLAAANRYRLSPRLEAAVRAADHAHAVMALRRSLVMETSLAVLILALVAWLGVLSP 306 >ref|ZP_07677917.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] gb|EFP63760.1| copper resistance protein D [Ralstonia sp. 5_7_47FAA] Length = 309 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 159/300 (53%), Positives = 208/300 (69%) Query: 2 TVLVRFALYLDLMLVFGLPLFHLHALRKPERSSMLARKLSTLTASAAIVGMILSAISMVL 61 + +RFALYLDL ++FG+ LF + ALR R+S +AR+ + A +G++LS S+V+ Sbjct: 7 NIALRFALYLDLTILFGVSLFGVQALRPDHRASAIARRYVCTVGTTAALGILLSLWSIVV 66 Query: 62 MTKAMSGAADFSSIEQHMFEMMLTDTPFGLAWCLRMAMLVLSVLAVLFLAQAPTWKFGMM 121 M KAM+GA ++ ++ H+F M+LT T GLAW R+ LV ++ V +LA+ P FG+ Sbjct: 67 MAKAMTGATEYGALTSHIFGMILTTTTVGLAWIARLVALVSCLVVVAWLAKRPIPHFGLC 126 Query: 122 SLAGGVALATLSWGGHGAMDEGARGQLHLAADIIHLLAAGAWIGALAVFILILALRDGHD 181 + G VAL T++W GHGAM +GA G LHLA+DI H+LAAGAW+GALA F+L+ ++R Sbjct: 127 AGLGAVALVTVTWAGHGAMHDGATGYLHLASDIAHVLAAGAWVGALAAFVLLASMRHAAS 186 Query: 182 ANNVSLLSRTLNGFALVGTLIVGSLLMTGALNYWLIVGPTVTGLFSTPYVQLLIAKLVLF 241 V +LS T NGFA +GTLIV +LL TG NYWLIVGPT+ GLFS+ Y +LL+ KL LF Sbjct: 187 TEAVEILSHTSNGFARLGTLIVATLLATGVFNYWLIVGPTLDGLFSSLYGRLLLLKLALF 246 Query: 242 GMMLALAAANRYRLSPVLERAHVSGKHQEAVAGLRRSLLIETACACLILALVAWLGTLGP 301 G ML LAAANRYRLSP LE A G H +AV LRRSL +E A +ILA VAWLG L P Sbjct: 247 GAMLGLAAANRYRLSPQLETALDVGDHSDAVIALRRSLCMEAGLAVVILAAVAWLGVLSP 306 >ref|YP_002973581.1| copper resistance D domain protein [Ralstonia pickettii 12D] gb|ACS66337.1| copper resistance D domain protein [Ralstonia pickettii 12D] Length = 309 Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 152/300 (50%), Positives = 207/300 (69%) Query: 2 TVLVRFALYLDLMLVFGLPLFHLHALRKPERSSMLARKLSTLTASAAIVGMILSAISMVL 61 + +RFALY+DL ++FG+ LF +ALR RSS +AR+ AA G++LS S+V+ Sbjct: 7 NIALRFALYVDLTILFGVSLFGAYALRPDHRSSAIARRYVCAIGVAAASGIVLSLWSIVV 66 Query: 62 MTKAMSGAADFSSIEQHMFEMMLTDTPFGLAWCLRMAMLVLSVLAVLFLAQAPTWKFGMM 121 KAM+GAA+++ + H+F MML+ T G+ W +R+A L ++ V+ + + PT F + Sbjct: 67 TAKAMTGAAEYAELSSHVFGMMLSSTAVGIGWLVRIAALAACLIIVMCVRRMPTLHFDIF 126 Query: 122 SLAGGVALATLSWGGHGAMDEGARGQLHLAADIIHLLAAGAWIGALAVFILILALRDGHD 181 ++ G VALAT++W GHGAM +G+RG +H+ ADI HLLAAGAW+G+L F+L+ + Sbjct: 127 AVLGAVALATVAWAGHGAMHDGSRGYVHITADIAHLLAAGAWVGSLTAFVLLARAQQAAS 186 Query: 182 ANNVSLLSRTLNGFALVGTLIVGSLLMTGALNYWLIVGPTVTGLFSTPYVQLLIAKLVLF 241 +V +L+ T NGFA +GTLIV +LL TG +NY LIVGPT+ GL ++ Y LL+AKL LF Sbjct: 187 LESVEILNHTSNGFARLGTLIVATLLATGVVNYLLIVGPTIDGLATSAYGVLLLAKLALF 246 Query: 242 GMMLALAAANRYRLSPVLERAHVSGKHQEAVAGLRRSLLIETACACLILALVAWLGTLGP 301 G+ML LAAANRY LSP LE A SG H AV LRRSLL E + A +ILALVAWLG L P Sbjct: 247 GLMLGLAAANRYLLSPQLEIAMRSGDHAGAVMTLRRSLLTEASLAVVILALVAWLGVLSP 306 >ref|YP_001561475.1| copper resistance D domain-containing protein [Delftia acidovorans SPH-1] ref|ZP_08506047.1| Putative copper resistance D transmembrane protein, CopD [Methyloversatilis universalis FAM5] gb|ABX33090.1| copper resistance D domain protein [Delftia acidovorans SPH-1] gb|EGK70625.1| Putative copper resistance D transmembrane protein, CopD [Methyloversatilis universalis FAM5] Length = 308 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 148/285 (51%), Positives = 199/285 (69%), Gaps = 1/285 (0%) Query: 17 FGLPLFHLHALRKPERSSMLARKLSTLTASAAIVGMILSAISMVLMTKAMSGAADFSSIE 76 FG+ +F L+AL ERSS ++R+ L ++A +G++LS M +M KAMSGA ++ + Sbjct: 22 FGVAMFGLYALGNDERSSTISRRYRVLIGASAAIGIVLSMWGMTVMAKAMSGAQSYAELS 81 Query: 77 QHMFEMMLTDTPFGLAWCLRMAMLVLSVLAVLFLAQAPTWKFGMMSLAGGVALATLSWGG 136 H+F+M++T T G+AWC+R+ LV VL + L T +F M+ + GVALATL+W G Sbjct: 82 THVFDMLITGTHMGIAWCIRILALVTCVL-IAVLRMNSTLRFAAMAASSGVALATLAWAG 140 Query: 137 HGAMDEGARGQLHLAADIIHLLAAGAWIGALAVFILILALRDGHDANNVSLLSRTLNGFA 196 HGAMD+G RG +HLA+DI HL AAGAW+GAL F+++ A + +V +LSRT NGFA Sbjct: 141 HGAMDDGVRGYIHLASDITHLWAAGAWVGALIAFLVLAANKPNTGQGSVEILSRTSNGFA 200 Query: 197 LVGTLIVGSLLMTGALNYWLIVGPTVTGLFSTPYVQLLIAKLVLFGMMLALAAANRYRLS 256 +GT+IV +L++TGALNY LI GP++ LFST Y +LL+ KL+LFG MLALAAANR+RLS Sbjct: 201 RIGTVIVAALVVTGALNYLLIAGPSLDPLFSTLYGRLLVGKLLLFGGMLALAAANRFRLS 260 Query: 257 PVLERAHVSGKHQEAVAGLRRSLLIETACACLILALVAWLGTLGP 301 P LE A +G H AV LR+SL E A L+LA VAWLG L P Sbjct: 261 PSLEAALRTGNHAHAVVKLRQSLFTEATLAVLVLASVAWLGILSP 305