BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0037.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBJ40260.1| CopB ATPase, Copper resistance protein B precurs... 362 4e-98 ref|NP_522218.1| copper resistance protein B [Ralstonia solanace... 361 9e-98 ref|YP_841696.1| copper resistance protein B, copper extruder [R... 360 1e-97 ref|YP_004682350.1| copper resistance protein C [Cupriavidus nec... 356 2e-96 ref|YP_145681.1| CopB protein [Ralstonia metallidurans CH34] >gi... 355 4e-96 >emb|CBJ40260.1| CopB ATPase, Copper resistance protein B precursor [Ralstonia solanacearum CMR15] Length = 332 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 191/322 (59%), Positives = 225/322 (69%), Gaps = 21/322 (6%) Query: 5 AAQAQAHAGHGA-PTSDAASQPAVTTMD---------SMQTMDTMNGETSSTPGTADHGA 54 AAQ +GH A P D ++ A+ MD +MQ MD S+ P DHGA Sbjct: 21 AAQTTPQSGHDAMPGMDHSAHGAMPGMDHGTMPMDHGAMQGMDH-----SAMP--MDHGA 73 Query: 55 MNHAGMDHG-MNMGSASTAPSDARDPHGYSNGYTLNTGPYAQKDTSGLMMSDMHSFGSFI 113 M GMDHG MNM +AP+DARDP YSNGY L TGPYA DT LMM+D H F S + Sbjct: 74 M--PGMDHGSMNM-QGGSAPADARDPDAYSNGYRLGTGPYALGDTRHLMMADEHKFASVL 130 Query: 114 ADRLERVHTRKANSVAYDTQAWIGNTYDKFYIKAEGDIEQGRVGDSRTELLWSHAVTPYW 173 +RLE H N+ AYD QAW G +YDK IKAEGDI +GR ++RTELLW HA+ P+W Sbjct: 131 VERLEWAHGNGTNATAYDAQAWFGTSYDKLVIKAEGDIHKGRAEEARTELLWGHAIAPFW 190 Query: 174 DSQLGLRVDAGSNRPGRNWLAFGLQGLAPYWFEVEATGYVGEQGRTALRLSAEYEVLLTQ 233 D+QLGLR DAG+ RPGRNW AFG+QGLAPYWF +EAT YVG+ GRTALRLS+EYE+LLTQ Sbjct: 191 DTQLGLRNDAGTGRPGRNWAAFGVQGLAPYWFHLEATAYVGDSGRTALRLSSEYELLLTQ 250 Query: 234 RWILQPRVEANLYGKEDPDLGIGRGLSSAAYGMRLRYEFSRRFAPYIGIERSQKFGRTAS 293 R ILQPR+EA+ YGK DP L IG GLSS G+RLRYEFSR+FAPY+G+ER+Q FG TA+ Sbjct: 251 RLILQPRLEASFYGKRDPALDIGSGLSSGTLGLRLRYEFSRQFAPYVGVERNQAFGGTAN 310 Query: 294 YTRDAGSNVGETRLVAGVRILF 315 AG GETR+VAGVR F Sbjct: 311 LIEAAGGRRGETRVVAGVRFWF 332 >ref|NP_522218.1| copper resistance protein B [Ralstonia solanacearum GMI1000] emb|CAD17808.1| probable copper resistance protein b [Ralstonia solanacearum GMI1000] Length = 346 Score = 361 bits (926), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 190/319 (59%), Positives = 222/319 (69%), Gaps = 10/319 (3%) Query: 3 MNAAQAQAHAGHGAPTSDAASQPAVTTMDSMQTMDTMNGETSSTPGTADHGAM--NHA-- 58 + A AQ H G A AA D+M MD + S+ PG DHGAM +H Sbjct: 32 IGMAWAQEHPGPDAGQPTAAQAAPQGGHDAMPGMD--HSAHSAMPGM-DHGAMPMDHGAM 88 Query: 59 -GMDHG-MNMGSASTAPSDARDPHGYSNGYTLNTGPYAQKDTSGLMMSDMHSFGSFIADR 116 GMDHG MNM +AP DARDP YSNGY L GPYA DT LMM+D H F S + +R Sbjct: 89 PGMDHGSMNM-QGGSAPPDARDPDAYSNGYRLGAGPYALGDTRHLMMADEHRFASVLVER 147 Query: 117 LERVHTRKANSVAYDTQAWIGNTYDKFYIKAEGDIEQGRVGDSRTELLWSHAVTPYWDSQ 176 LE H N+ AYD QAW G +YDK IKAEGDI +GRV ++RTELLW HA+ P+WD+Q Sbjct: 148 LEWAHGNGTNATAYDAQAWFGTSYDKLVIKAEGDIHKGRVEEARTELLWGHAIAPFWDTQ 207 Query: 177 LGLRVDAGSNRPGRNWLAFGLQGLAPYWFEVEATGYVGEQGRTALRLSAEYEVLLTQRWI 236 LGLR DAG+ RPGR+W AFG+QGLAPYWF +EAT YVG+ GRTALRLS+EYE+LLTQR I Sbjct: 208 LGLRNDAGTGRPGRSWAAFGVQGLAPYWFHLEATAYVGDSGRTALRLSSEYELLLTQRLI 267 Query: 237 LQPRVEANLYGKEDPDLGIGRGLSSAAYGMRLRYEFSRRFAPYIGIERSQKFGRTASYTR 296 LQPR+EA+ YGK DP L IG GLSS G+RLRYEFSR+FAPY+G+ERSQ FG TA+ Sbjct: 268 LQPRLEASFYGKRDPALEIGSGLSSGTLGLRLRYEFSRQFAPYVGVERSQAFGGTANLIE 327 Query: 297 DAGSNVGETRLVAGVRILF 315 AG GETR+VAGVR F Sbjct: 328 AAGGRRGETRVVAGVRFWF 346 >ref|YP_841696.1| copper resistance protein B, copper extruder [Ralstonia eutropha H16] emb|CAJ96966.1| copper resistance protein B, copper extruder [Ralstonia eutropha H16] Length = 341 Score = 360 bits (925), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 188/322 (58%), Positives = 223/322 (69%), Gaps = 14/322 (4%) Query: 2 SMNAAQAQ-AHAGHGAPTSDAASQPAVTTMD--SMQTMD-----TMNGETSSTPGTADHG 53 ++ AAQAQ HAGH A DA + A+ MD MQ M+ TM+G + TP T Sbjct: 26 AIGAAQAQDPHAGH-AHQHDAPA--AMQGMDHGQMQGMEQDGIQTMDGGGAPTPDTQ--- 79 Query: 54 AMNHAGMDHGMNMGSASTAPSDARDPHGYSNGYTLNTGPYAQKDTSGLMMSDMHSFGSFI 113 M MDHG +AP DARDPH YS GY L G YA D L+M+D H F S + Sbjct: 80 GMAAPAMDHGDMKMQGGSAPPDARDPHAYSGGYQLGVGKYALGDKRQLVMADEHLFASVL 139 Query: 114 ADRLERVHTRKANSVAYDTQAWIGNTYDKFYIKAEGDIEQGRVGDSRTELLWSHAVTPYW 173 DRLE H +N+ AY+ QAW GN+YDK +KAEG+ +G++ ++RTELLW HAV YW Sbjct: 140 VDRLEWAHANGSNAAAYEAQAWFGNSYDKLVLKAEGEASKGKLHEARTELLWGHAVASYW 199 Query: 174 DSQLGLRVDAGSNRPGRNWLAFGLQGLAPYWFEVEATGYVGEQGRTALRLSAEYEVLLTQ 233 D+QLGLR D GS RP RNWLAFG+QGLAPYWFEV+AT YVG GRTALRLSAEYE+LLTQ Sbjct: 200 DTQLGLRNDTGSGRPARNWLAFGVQGLAPYWFEVDATAYVGTSGRTALRLSAEYELLLTQ 259 Query: 234 RWILQPRVEANLYGKEDPDLGIGRGLSSAAYGMRLRYEFSRRFAPYIGIERSQKFGRTAS 293 R ILQPR+EANLYGK DP++GIG GLS+ G+RLRYEFSR+FAPYIG+ER Q FG TA Sbjct: 260 RLILQPRIEANLYGKNDPEVGIGSGLSNGTVGLRLRYEFSRQFAPYIGVERYQTFGNTAD 319 Query: 294 YTRDAGSNVGETRLVAGVRILF 315 R +G GETR VAGVR+ F Sbjct: 320 MIRTSGGKAGETRFVAGVRVWF 341 >ref|YP_004682350.1| copper resistance protein C [Cupriavidus necator N-1] gb|AEI81118.1| copper resistance protein B copper extruder [Cupriavidus necator N-1] Length = 341 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 186/317 (58%), Positives = 219/317 (69%), Gaps = 14/317 (4%) Query: 7 QAQ-AHAGHGAPTSDAASQPAVTTMD--SMQTMD-----TMNGETSSTPGTADHGAMNHA 58 QAQ HAGH A DA + A+ MD MQ M+ TM+G + P D M Sbjct: 31 QAQDPHAGH-AHKHDAPA--AMQGMDHGQMQGMEQDGIQTMDGGGAPVP---DMQGMAAP 84 Query: 59 GMDHGMNMGSASTAPSDARDPHGYSNGYTLNTGPYAQKDTSGLMMSDMHSFGSFIADRLE 118 MDHG +AP DARDPH YS GY L G YA D L+M+D H F S + DRLE Sbjct: 85 AMDHGDMKMQGGSAPPDARDPHAYSGGYQLGVGKYALGDKRQLVMADEHLFASVLVDRLE 144 Query: 119 RVHTRKANSVAYDTQAWIGNTYDKFYIKAEGDIEQGRVGDSRTELLWSHAVTPYWDSQLG 178 H +N+ AY+ QAW GN+YDK +KAEG+ +G++ ++RTELLW HAV YWD+QLG Sbjct: 145 WAHANGSNAAAYEMQAWFGNSYDKLVLKAEGEASKGKMHEARTELLWGHAVASYWDTQLG 204 Query: 179 LRVDAGSNRPGRNWLAFGLQGLAPYWFEVEATGYVGEQGRTALRLSAEYEVLLTQRWILQ 238 LR DAGS RP RNWLAFG+QGLAPYWFEV+AT YVG GRTALRLSAEYE+LLTQR ILQ Sbjct: 205 LRNDAGSGRPARNWLAFGVQGLAPYWFEVDATAYVGTSGRTALRLSAEYELLLTQRLILQ 264 Query: 239 PRVEANLYGKEDPDLGIGRGLSSAAYGMRLRYEFSRRFAPYIGIERSQKFGRTASYTRDA 298 PR+EANLYGK DP++GIG GLS+ G+RLRYEFSR+FAPYIG+ER Q FG TA R + Sbjct: 265 PRIEANLYGKNDPEVGIGSGLSNGTVGLRLRYEFSRQFAPYIGVERYQAFGNTADMIRTS 324 Query: 299 GSNVGETRLVAGVRILF 315 G GETR VAGVR+ F Sbjct: 325 GGKAGETRFVAGVRVWF 341 >ref|YP_145681.1| CopB protein [Ralstonia metallidurans CH34] ref|YP_581922.1| Cu(II)/Cu(I) resistance outer membrane protein CopB [Cupriavidus metallidurans CH34] emb|CAI11330.1| CopB protein [Cupriavidus metallidurans CH34] gb|ABF12972.1| CopB outer membrane protein involved in Cu(II)/Cu(I) resistance [Cupriavidus metallidurans CH34] Length = 495 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 175/296 (59%), Positives = 214/296 (72%), Gaps = 6/296 (2%) Query: 24 QPAVTTMD--SMQTMD--TMNGETSSTPGTADHGAMNHAGMDHGMNMGSASTAPSDARDP 79 Q ++ MD MQ MD +M G S D G+M GMDHG +AP DARDP Sbjct: 202 QGSMQGMDHSKMQGMDQGSMQGMDHSKMQGMDQGSMQ--GMDHGAMQMQGGSAPPDARDP 259 Query: 80 HGYSNGYTLNTGPYAQKDTSGLMMSDMHSFGSFIADRLERVHTRKANSVAYDTQAWIGNT 139 YS+G L G YA + L M+D H F S + DRLE ++N+ +Y+ QAWIGN Sbjct: 260 DAYSDGAKLGVGQYAIGPSRSLHMADEHIFASVLVDRLEWTKGNESNAASYEAQAWIGNA 319 Query: 140 YDKFYIKAEGDIEQGRVGDSRTELLWSHAVTPYWDSQLGLRVDAGSNRPGRNWLAFGLQG 199 ++KF IKAEG++E+G+V ++RTELLW HA+ YWD+QLG+R DAG RP RNWLAFG+QG Sbjct: 320 FNKFVIKAEGEVEKGKVPEARTELLWGHAIATYWDTQLGVRNDAGYGRPARNWLAFGVQG 379 Query: 200 LAPYWFEVEATGYVGEQGRTALRLSAEYEVLLTQRWILQPRVEANLYGKEDPDLGIGRGL 259 LAPYWFEVEATGYVG +GRTALRLS EY++LLTQR ILQPR+EA+LYGK DP++GIG GL Sbjct: 380 LAPYWFEVEATGYVGTEGRTALRLSGEYDLLLTQRLILQPRLEASLYGKNDPEIGIGSGL 439 Query: 260 SSAAYGMRLRYEFSRRFAPYIGIERSQKFGRTASYTRDAGSNVGETRLVAGVRILF 315 SS A G+RLRYEFSR+FAPYIGIERSQ FG TA+ R +G GETR VAG+R+ F Sbjct: 440 SSGAVGVRLRYEFSRQFAPYIGIERSQSFGNTANMVRASGGRSGETRFVAGIRMWF 495