BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0013.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751853.1| two-component response regulator [Collimonas... 302 2e-80 ref|YP_001416438.1| two component transcriptional regulator [Xan... 250 9e-65 ref|YP_524360.1| two component transcriptional regulator [Rhodof... 249 3e-64 ref|NP_108156.1| two-component response regulator [Mesorhizobium... 234 7e-60 ref|YP_001372051.1| two component transcriptional regulator [Och... 231 4e-59 >ref|YP_004751853.1| two-component response regulator [Collimonas fungivorans Ter331] gb|AEK61030.1| two-component response regulator [Collimonas fungivorans Ter331] Length = 224 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 142/207 (68%), Positives = 180/207 (86%) Query: 2 LTLQRNNYSVDCVHDGADADHLLLTQQYDLIILDIALPKLNGNEVVKRLRARNNAVPVLM 61 LTL RN Y+VDCV++GADADHLLLTQQY+L+ILD++LPKL+G+EV+KRLRAR+N VPVL+ Sbjct: 18 LTLHRNKYTVDCVYNGADADHLLLTQQYELVILDMSLPKLDGSEVLKRLRARHNNVPVLI 77 Query: 62 LTAANSVQGRVLSLDLGADDYMGKPFEVSELEARIRALLRRSGQRPNPVWQCGSLIYDSN 121 LTA NSV+GR++ L+ GADDYM KPF+V+ELEARIRALLRR+ Q+ NP+ QCGSL YDSN Sbjct: 78 LTANNSVEGRIVGLNTGADDYMAKPFDVNELEARIRALLRRANQQKNPILQCGSLSYDSN 137 Query: 122 TRIFTVAELPLSVTGREHAILEILMLKAGKTVSKKMLAESLFSMEDESSFDAIEVYIHRL 181 + IF++ + L++T REHA+LE L++K GKTVSK+ LAESL++M ++ S DAIEVYIHR+ Sbjct: 138 SLIFSIDGVALTLTRREHAVLETLIMKMGKTVSKQALAESLYAMAEDVSQDAIEVYIHRI 197 Query: 182 RKKLSDCDASIITLRGLGYLLKHHHAI 208 RKKL DA+IITLRGLGYLLKH H + Sbjct: 198 RKKLEHGDAAIITLRGLGYLLKHQHEV 224 >ref|YP_001416438.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS66781.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 250 bits (638), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 111/201 (55%), Positives = 159/201 (79%) Query: 4 LQRNNYSVDCVHDGADADHLLLTQQYDLIILDIALPKLNGNEVVKRLRARNNAVPVLMLT 63 L+++NY VD HDG +ADH L YDL+ILD+ LPK+NG ++++R+R+R + VPV++LT Sbjct: 20 LRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGMQLLRRIRSRKDTVPVIILT 79 Query: 64 AANSVQGRVLSLDLGADDYMGKPFEVSELEARIRALLRRSGQRPNPVWQCGSLIYDSNTR 123 A S+ GRV LD GADDY+ KPF+++ELEARIR LRRS +RP+PV CG+L +D+NTR Sbjct: 80 ANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSARRPDPVISCGALAFDTNTR 139 Query: 124 IFTVAELPLSVTGREHAILEILMLKAGKTVSKKMLAESLFSMEDESSFDAIEVYIHRLRK 183 +F ++ PL++T REHA+LE+L++K+G+TVSK L++S+F ++D + AIE+Y+HR+RK Sbjct: 140 LFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFGLDDLADPSAIEIYVHRVRK 199 Query: 184 KLSDCDASIITLRGLGYLLKH 204 KL D I+TLRGLGYLL+H Sbjct: 200 KLEGSDVRIVTLRGLGYLLQH 220 >ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70829.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 117/201 (58%), Positives = 160/201 (79%) Query: 3 TLQRNNYSVDCVHDGADADHLLLTQQYDLIILDIALPKLNGNEVVKRLRARNNAVPVLML 62 TL++ Y+VDC+ +GADAD L +++Y+LIILD+ALPKL+G EV++RLRAR++ PVL+L Sbjct: 34 TLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGKEVLRRLRARDDQTPVLIL 93 Query: 63 TAANSVQGRVLSLDLGADDYMGKPFEVSELEARIRALLRRSGQRPNPVWQCGSLIYDSNT 122 TA N++Q RV LD GADDYM KPFE+ ELEARIR LLRRS + +P+ CG L Y++NT Sbjct: 94 TANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRRSSGQASPLIACGDLSYNTNT 153 Query: 123 RIFTVAELPLSVTGREHAILEILMLKAGKTVSKKMLAESLFSMEDESSFDAIEVYIHRLR 182 R F +++ L++T RE A+LE+L+ K+G TV+K LA+SLFS+ +++S DAIE+Y+HRLR Sbjct: 154 REFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFSLSEDASTDAIEIYVHRLR 213 Query: 183 KKLSDCDASIITLRGLGYLLK 203 KKL A I+TLRGLGYLL+ Sbjct: 214 KKLEHSSAQIMTLRGLGYLLR 234 >ref|NP_108156.1| two-component response regulator [Mesorhizobium loti MAFF303099] dbj|BAB53617.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 234 bits (597), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 151/203 (74%) Query: 3 TLQRNNYSVDCVHDGADADHLLLTQQYDLIILDIALPKLNGNEVVKRLRARNNAVPVLML 62 TL++ NY VD VHDG D +H L + L+ILD+ALP+++G EV++ LRAR N VPV++L Sbjct: 19 TLRQANYVVDIVHDGEDVEHALAAGDHALVILDLALPRMSGLEVLRTLRARGNRVPVIVL 78 Query: 63 TAANSVQGRVLSLDLGADDYMGKPFEVSELEARIRALLRRSGQRPNPVWQCGSLIYDSNT 122 TA S+ GRV L+ GADDY+ KPF++ ELEARIRA LRR+ R PV CG L++D+NT Sbjct: 79 TANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRRANDRTAPVVACGDLVFDTNT 138 Query: 123 RIFTVAELPLSVTGREHAILEILMLKAGKTVSKKMLAESLFSMEDESSFDAIEVYIHRLR 182 R+F++A PL++T REHA+LE LM+KAG+TVSK L+ +++ E ++ AIE+Y+HR+R Sbjct: 139 RLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAALSAAIYDFETDADPSAIEIYVHRVR 198 Query: 183 KKLSDCDASIITLRGLGYLLKHH 205 KKL I TLRGLGYLL+H Sbjct: 199 KKLEGSRVQIATLRGLGYLLRHE 221 >ref|YP_001372051.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gb|ABS16222.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 222 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 110/202 (54%), Positives = 148/202 (73%) Query: 3 TLQRNNYSVDCVHDGADADHLLLTQQYDLIILDIALPKLNGNEVVKRLRARNNAVPVLML 62 +LQ++NYSVD VHD ADA+ L +YDL++LD+ LP G +V++ +R R N VPV++L Sbjct: 19 SLQQSNYSVDTVHDAADAEQALAFTEYDLVVLDLGLPDKTGLDVLEHIRGRGNEVPVIIL 78 Query: 63 TAANSVQGRVLSLDLGADDYMGKPFEVSELEARIRALLRRSGQRPNPVWQCGSLIYDSNT 122 TA S+ GR+ LD GADDY+ KPFE+SELEARIRA LRRS QR PV CG L +D+NT Sbjct: 79 TANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRSSQRTAPVVTCGLLRFDTNT 138 Query: 123 RIFTVAELPLSVTGREHAILEILMLKAGKTVSKKMLAESLFSMEDESSFDAIEVYIHRLR 182 R+F++ + PLS+ +EHA+LE L+ + G TVSK L + ++ + E+ +AIE+YIHRLR Sbjct: 139 RLFSLGDDPLSLAPKEHAVLEQLLRRIGTTVSKTTLVQGIYDFDSETDENAIEIYIHRLR 198 Query: 183 KKLSDCDASIITLRGLGYLLKH 204 KKL A I+TLRGLGYLL+ Sbjct: 199 KKLEGSKAEIVTLRGLGYLLRE 220