BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0012.p (451 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751852.1| periplasmic sensor signal transduction histi... 478 e-133 ref|YP_524361.1| periplasmic sensor signal transduction histidin... 385 e-105 ref|YP_004613688.1| integral membrane sensor signal transduction... 344 2e-92 ref|YP_004143846.1| Two-component sensor kinase domain-containin... 338 2e-90 ref|YP_003776781.1| transmembrane sensor kinase transcription re... 331 2e-88 >ref|YP_004751852.1| periplasmic sensor signal transduction histidine kinase [Collimonas fungivorans Ter331] gb|AEK61029.1| periplasmic sensor signal transduction histidine kinase [Collimonas fungivorans Ter331] Length = 466 Score = 478 bits (1231), Expect = e-133, Method: Compositional matrix adjust. Identities = 271/438 (61%), Positives = 321/438 (73%), Gaps = 1/438 (0%) Query: 10 FVAFNSWVAYKNAIEMATVVQDRMLLGAARIIAEQIRYDDDIFEVSVPPSALELFESAAQ 69 FV N WV Y NAIEMATVV DRMLLG+ARII EQI Y+DD +V +PP+ALELF+S + Sbjct: 21 FVGVNIWVTYHNAIEMATVVHDRMLLGSARIIGEQIHYEDDTLQVVIPPAALELFQSDSH 80 Query: 70 DHVYYRVTSSNGTLLAGSEDFPLPRAPARMDAAVHFSAQFRQQPVRIVAYTKSVIAAPSE 129 D VYYRV ++NG LLAG D P P R + +V+F+A FR PVRIVA+++ V P++ Sbjct: 81 DRVYYRVVAANGKLLAGQPDLPGPPRMPRNEESVYFNASFRDDPVRIVAFSQPVFGIPAQ 140 Query: 130 TTVIVEVAQTLHAHKILSDGVWEHTIQQQLLIMLLVAGLAWIGMRRGLAPTMRLRDHVQN 189 V++EVAQT H++K LSD +WEHT+QQQL I++LV L +G+R GLAP MRLRD V+ Sbjct: 141 GPVLIEVAQTQHSYKTLSDRMWEHTVQQQLAILVLVVLLLLLGLRHGLAPMMRLRDRVRR 200 Query: 190 RQPSSLEPLDATPVPNELVPLVDAINHYVGRLDEHMTAHDRFIANASHQLRTPLAALNTQ 249 R+P +LE LD PVP EL PLV AIN YV RLD+HM+AH RFIANASHQLRTPL LNTQ Sbjct: 201 RKPGTLEALDTAPVPTELAPLVHAINDYVQRLDDHMSAHGRFIANASHQLRTPLTLLNTQ 260 Query: 250 VDYGLRSETIDGKNAALRAINGGVQHGIRLVNQLLTLSNAGAISTRRLQHAQKVDLVRVV 309 VDYGLRS I K+AALRAIN GVQHGIRLVNQLLTLSNA L+ V+LV VV Sbjct: 261 VDYGLRSNDIGAKDAALRAINSGVQHGIRLVNQLLTLSNAETGVGHPLRQG-DVNLVEVV 319 Query: 310 QQVFEELAIVAQDRGIDLGFECKEEQICLTDTAGLLDELVSNLVDNALRYTLVGGVVTVS 369 Q+V EELA +AQ + IDLGFE + + T +L+ELV+NLVDNALRYT GG VTV+ Sbjct: 320 QRVLEELATLAQAKKIDLGFEFAGAPVTVHATPSMLEELVANLVDNALRYTPAGGCVTVA 379 Query: 370 VERHDGAVLLKVEDNGPGIPESERERVFERFYRIDAGKHHGTGLGLAIVREIVAAIGAVI 429 V A LL+VEDNGPGIPE ERERVFERFYR+ + G+GLGLAIVREI A A + Sbjct: 380 VTTAGQATLLRVEDNGPGIPEEERERVFERFYRLHEERSDGSGLGLAIVREIALASKATV 439 Query: 430 TLGSPINHSGLIVWVRFP 447 L SP SGLIV V FP Sbjct: 440 ALSSPATGSGLIVTVSFP 457 >ref|YP_524361.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] gb|ABD70830.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax ferrireducens T118] Length = 457 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 197/447 (44%), Positives = 289/447 (64%), Gaps = 4/447 (0%) Query: 2 WLLVPLAVFVAFNSWVAYKNAIEMATVVQDRMLLGAARIIAEQIRYDDDIFEVSVPPSAL 61 W+L+PL VA ++W+ +K++++ A+VVQDR+LLG+AR+IA+QI ++D F+ +PP+AL Sbjct: 12 WVLLPLICAVAVDTWLTFKSSVDTASVVQDRLLLGSARMIAQQISFEDGSFQHQIPPAAL 71 Query: 62 ELFESAAQDHVYYRVTSSNGTLLAGSEDFPLPRAPARMDAAVHFSAQFRQQPVRIVAYTK 121 ELF+S D ++YRVT+ G LL+G D P+P + D+ F A R +PVR+VA+ + Sbjct: 72 ELFQSEESDRIFYRVTTGAGQLLSGYTDLPVPVLDSSPDSPFFFGATMRGEPVRVVAFFQ 131 Query: 122 SVIAAPSETTVIVEVAQTLHAHKILSDGVWEHTIQQQLLIMLLVAGLAWIGMRRGLAPTM 181 VI PS V+VEVAQT AHK L++ +W H + QQLLI+ LV G+ RGL P + Sbjct: 132 PVIGNPSVLPVVVEVAQTTRAHKQLTNKLWLHAVGQQLLILALVTIFILFGLHRGLQPLI 191 Query: 182 RLRDHVQNRQPSSLEPLDATPVPNELVPLVDAINHYVGRLDEHMTAHDRFIANASHQLRT 241 RLR+ V++R+ SL+ L +P EL PLVD+ N Y+ RL+ + + FI NA+HQLRT Sbjct: 192 RLRNDVRSRKEGSLQRLQTNRIPAELTPLVDSFNDYIQRLENYTSRRGAFIQNAAHQLRT 251 Query: 242 PLAALNTQVDYGLRSETIDGKNAALRAINGGVQHGIRLVNQLLTLSNAGA-ISTRRLQHA 300 PLA L TQ+ LR+E + + +L A + +Q RLVNQ LTLS+A A ++ + L Sbjct: 252 PLAVLTTQISDALRAENKEIGDRSLIAAHRTLQQTGRLVNQFLTLSSAEAYVAAKTLMST 311 Query: 301 QKVDLVRVVQQVFEELAIVAQDRGIDLGFECKEEQICLTDTAGLLDELVSNLVDNALRYT 360 Q + +VQ + E+LA+ A + IDLGFE ++ E+ N++DNA+RYT Sbjct: 312 Q--ECCDIVQGILEDLAVQAHSKNIDLGFERIGGDTVISSDPAAFREIAVNIIDNAIRYT 369 Query: 361 LVGGVVTVSVERHDGAVLLKVEDNGPGIPESERERVFERFYRIDAGKHHGTGLGLAIVRE 420 GVVTV V+ +G + L VEDNGPG+P +E++F+RFYRI G+GLGLAIV+E Sbjct: 370 PAHGVVTVRVQSTEGKIALAVEDNGPGVPLESQEKIFQRFYRIGGTDSAGSGLGLAIVKE 429 Query: 421 IVAAIGAVITLGSPIN-HSGLIVWVRF 446 + + GA I L +P + SGL++ + F Sbjct: 430 LASQCGATIRLAAPAHGGSGLLIVIDF 456 >ref|YP_004613688.1| integral membrane sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] gb|AEH89594.1| integral membrane sensor signal transduction histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 450 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 193/447 (43%), Positives = 263/447 (58%), Gaps = 10/447 (2%) Query: 2 WLLVPLAVFVAFNSWVAYKNAIEMATVVQDRMLLGAARIIAEQIRYDDDIFEVSVPPSAL 61 W+++PLA N W + +NA+ A +V DRML+G+AR IAEQ+ D + + +VPP+A+ Sbjct: 13 WVVLPLAGLATINLWTSQRNALATADLVTDRMLVGSARAIAEQVAMVDGVLDATVPPAAI 72 Query: 62 ELFESAAQDHVYYRVTSSNGTLLAGSEDFPLPRAPARMDAAVHFSAQFRQQPVRIVAYTK 121 E+F++ +D VYYRV ++ G LL G D LP AP A +R +R++ Sbjct: 73 EMFDTGDRDSVYYRVETAGGRLLTGYPD--LPEAPQH----ASVEAAYRDHQLRLMTLGH 126 Query: 122 SVIAAPSETTVIVEVAQTLHAHKILSDGVWEHTIQQQLLIMLLVAGLAWIGMRRGLAPTM 181 +VI A +++ + V V TL H + +W QQL ++ + +G+RRGLAP + Sbjct: 127 AVIGAGNDSPISVTVGVTLAGHDAMVKRLWFSAFAQQLALVAIAGVFVLLGLRRGLAPLI 186 Query: 182 RLRDHVQNRQPSSLEPLDATPVPNELVPLVDAINHYVGRLDEHMTAHDRFIANASHQLRT 241 RLRD V++ S L+P++ +E+ PL+DA+N Y+ R+ M A RFIANA+HQLRT Sbjct: 187 RLRDAVRSPNRSDLDPVEVPGAQSEIRPLIDALNAYMERVRAQMAAQRRFIANAAHQLRT 246 Query: 242 PLAALNTQVDYGLRSETIDGKNAALRAINGGVQHGIRLVNQLLTLSNAGAISTRRLQHAQ 301 PLA L+TQ Y LR D + AL A+ RL QLLTLS A S R A Sbjct: 247 PLALLSTQASYALRESAADARQEALVALQASSGKLARLAEQLLTLSRAEPGSRR--PRAD 304 Query: 302 KVDLVRVVQQVFEELAIVAQDRGIDLGFECKEEQICLTDTAGLLDELVSNLVDNALRYTL 361 +VDL + V E A A R IDLG E + + +T +L E++ NLVDNALRY+ Sbjct: 305 RVDLAEAARHVLETQAPTAIARNIDLGLE-EAGPVPVTGDGTMLREMIVNLVDNALRYSP 363 Query: 362 VGGVVTVSVERHDGAVLLKVEDNGPGIPESERERVFERFYRIDAGKHHGTGLGLAIVREI 421 VGG VTVS+ DG +L V DNGPGIP ERE VFERFYR+ G+GLGLAIVRE+ Sbjct: 364 VGGRVTVSLAALDGEAVLTVADNGPGIPADEREHVFERFYRVAGSSEQGSGLGLAIVREV 423 Query: 422 VAAIGAVITLGSPINHSGLIVWVRFPV 448 V G +TLG GL+V VR P+ Sbjct: 424 VENAGGRVTLGDGA-AGGLVVEVRLPL 449 >ref|YP_004143846.1| Two-component sensor kinase domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV13796.1| Two-component sensor kinase domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 450 Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 190/447 (42%), Positives = 260/447 (58%), Gaps = 10/447 (2%) Query: 2 WLLVPLAVFVAFNSWVAYKNAIEMATVVQDRMLLGAARIIAEQIRYDDDIFEVSVPPSAL 61 W+++PLA N W + +NA+ A +V DRML+G+AR IAEQ+ D + + +VPP+A+ Sbjct: 13 WVVLPLAGLATINLWTSQRNALATADLVTDRMLVGSARAIAEQVAMVDGVLDATVPPAAI 72 Query: 62 ELFESAAQDHVYYRVTSSNGTLLAGSEDFPLPRAPARMDAAVHFSAQFRQQPVRIVAYTK 121 E+F++ +D VYYRV ++ G LL G D LP AP A +R +R++ Sbjct: 73 EMFDTGDRDSVYYRVETAGGRLLTGYPD--LPEAPQH----ASVEAAYRDHQLRLLTLGH 126 Query: 122 SVIAAPSETTVIVEVAQTLHAHKILSDGVWEHTIQQQLLIMLLVAGLAWIGMRRGLAPTM 181 +VI A +++ + V V TL H + +W QQL ++ + +G+RRGLAP + Sbjct: 127 AVIGAGNDSPISVTVGVTLAGHDAMVKQLWFSAFAQQLALVAIAGVFVLLGLRRGLAPLI 186 Query: 182 RLRDHVQNRQPSSLEPLDATPVPNELVPLVDAINHYVGRLDEHMTAHDRFIANASHQLRT 241 RLRD V++ S L+P++ +E+ PL+DA+N Y+ R+ M A RFIANA+HQLRT Sbjct: 187 RLRDAVRSPNRSDLDPVEVPGAQSEIRPLIDALNAYMERVRAQMAAQRRFIANAAHQLRT 246 Query: 242 PLAALNTQVDYGLRSETIDGKNAALRAINGGVQHGIRLVNQLLTLSNAGAISTRRLQHAQ 301 PLA L+TQ Y LR D + AL A+ RL QLLTLS A S R A Sbjct: 247 PLALLSTQASYALRESAADARQEALVALQASSGKLARLAEQLLTLSRAEPGSRR--PRAD 304 Query: 302 KVDLVRVVQQVFEELAIVAQDRGIDLGFECKEEQICLTDTAGLLDELVSNLVDNALRYTL 361 ++DL + V E LA A DR IDLG E + D +L E++ NLVDNALRY+ Sbjct: 305 RIDLAEAARHVLETLAPTAIDRKIDLGLEEAGPVPVIGDGT-MLREMIVNLVDNALRYSR 363 Query: 362 VGGVVTVSVERHDGAVLLKVEDNGPGIPESERERVFERFYRIDAGKHHGTGLGLAIVREI 421 G VTV + DG +L V D+GPGIP ER+ VFERFYRI G+GLGLAIVRE+ Sbjct: 364 AEGSVTVKLAAIDGEAVLTVADDGPGIPADERDHVFERFYRIAGSTEEGSGLGLAIVREV 423 Query: 422 VAAIGAVITLGSPINHSGLIVWVRFPV 448 V G +TLG GL+V VR P+ Sbjct: 424 VENAGGRVTLGDG-AAGGLLVEVRLPL 449 >ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64873.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 186/447 (41%), Positives = 266/447 (59%), Gaps = 2/447 (0%) Query: 5 VPLAVFVAFNSWVAYKNAIEMATVVQDRMLLGAARIIAEQIRYDDDIFEVSVPPSALELF 64 +P+AV+V ++ AY NA+ AT+VQDR LL +AR+IA Q+ ++D VSVPP+ALELF Sbjct: 15 IPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELF 74 Query: 65 ESAAQDHVYYRVTSSNGTLLAGSEDFPLPRAPARMDAAVHFSAQFRQQPVRIVAYTKSVI 124 S AQD VYY+V + TLLAG DFP A + V+ + F +P+R+V+Y +++ Sbjct: 75 ASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAAL-YPVYSTTSFNGKPLRVVSYIRALF 133 Query: 125 AAPSETTVIVEVAQTLHAHKILSDGVWEHTIQQQLLIMLLVAGLAWIGMRRGLAPTMRLR 184 + V V V QT+ + + D W ++++Q++++LL L +G+ L P + L+ Sbjct: 134 DEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALK 193 Query: 185 DHVQNRQPSSLEPLDATPVPNELVPLVDAINHYVGRLDEHMTAHDRFIANASHQLRTPLA 244 D + R+P SL PL A + EL P+V+AIN Y+ RL+ +T RF+A+A+HQLRTPLA Sbjct: 194 DELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLA 253 Query: 245 ALNTQVDYGLRSETIDGKNAALRAINGGVQHGIRLVNQLLTLSNAGAISTRRLQHAQKVD 304 +++Q+ + + + L ++ G + L N+LL LS A A + A VD Sbjct: 254 VIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRA-PVD 312 Query: 305 LVRVVQQVFEELAIVAQDRGIDLGFECKEEQICLTDTAGLLDELVSNLVDNALRYTLVGG 364 L+ V V EEL+ +A +GIDLG E E + L ++ NL+DNALRYT GG Sbjct: 313 LLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGG 372 Query: 365 VVTVSVERHDGAVLLKVEDNGPGIPESERERVFERFYRIDAGKHHGTGLGLAIVREIVAA 424 VTV +E+ +++ V DNGPGIP RERVFERFYR A G+GLGLAIVREIV A Sbjct: 373 KVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQA 432 Query: 425 IGAVITLGSPINHSGLIVWVRFPVQQE 451 I L +P SGL+ V P Q Sbjct: 433 SQGSIRLDAPAQGSGLVATVSLPALQS 459