BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0011.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751851.1| outer membrane porin protein 32 [Collimonas ... 567 e-159 ref|YP_003744043.1| outer membrane porin [Ralstonia solanacearum... 442 e-122 ref|ZP_00943188.1| Outer membrane porin protein 32 precursor [Ra... 442 e-122 ref|YP_002258215.1| porin protein [Ralstonia solanacearum IPO160... 440 e-121 ref|YP_001901152.1| porin [Ralstonia pickettii 12J] >gi|18772755... 439 e-121 >ref|YP_004751851.1| outer membrane porin protein 32 [Collimonas fungivorans Ter331] gb|AEK61028.1| Outer membrane porin protein 32 precursor [Collimonas fungivorans Ter331] Length = 375 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 282/379 (74%), Positives = 323/379 (85%), Gaps = 4/379 (1%) Query: 1 MKKSLLSIAMLGAVASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGN 60 MKKSLL++A+LG A A AQ++VTVYGLIDATIST N+A+ NG RLTGI AWFSGN Sbjct: 1 MKKSLLALAVLGTCAH--AAYAQTNVTVYGLIDATISTVNHADKNGDRLTGIPVAWFSGN 58 Query: 61 RLGFQGKEDLGGGTGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQ 120 R+GF+G EDLG G AIFKLEAE++V TG MDTPGVLFNRD+WVGLQ+ TFG+VT+GRQ Sbjct: 59 RIGFRGAEDLGSGLKAIFKLEAEFVVGTGEMDTPGVLFNRDAWVGLQDT-TFGQVTLGRQ 117 Query: 121 NTLVRDFSQIYGDAYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNN 180 NTL RDFSQ+YGDAYGS KLG EEGG+TNNNNFKQLIFYSGSATGTRYDNG+VWKKVF N Sbjct: 118 NTLARDFSQVYGDAYGS-KLGLEEGGYTNNNNFKQLIFYSGSATGTRYDNGLVWKKVFGN 176 Query: 181 GIVVGAGYQFGEVAGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYS 240 G+V G GYQFGE AG TTK+ A+GYNGSN+++S F N+A+ N ++SS EKHK+YS Sbjct: 177 GVVAGLGYQFGETAGQFARNTTKSAAIGYNGSNFIVSAFINQADVGNGVSSSLEKHKSYS 236 Query: 241 LGGSYIMDLVRLNAGYFHYTAEQGALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNA 300 +GGSY+ DLVRLNAGYFHYTAEQGALG R D+A+TVSAK TPQG DYELGYQVMKA+NA Sbjct: 237 VGGSYMFDLVRLNAGYFHYTAEQGALGQRKDDAYTVSAKFTPQGSFDYELGYQVMKAENA 296 Query: 301 AISSDGSSTLNAFSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVG 360 A ++ G+STLNA++DA+ ST TGSGKK TLYAS FYHLSKRTELY+AADYMKL Y VG Sbjct: 297 AYNAAGTSTLNAYADASGSTATGSGKKKTLYASTFYHLSKRTELYLAADYMKLDGGYLVG 356 Query: 361 SANGFKNQTELAVGMRTRF 379 SANGFKNQTE AVGMRTRF Sbjct: 357 SANGFKNQTEFAVGMRTRF 375 >ref|YP_003744043.1| outer membrane porin [Ralstonia solanacearum CFBP2957] emb|CBJ41391.1| Putative outer membrane porin [Ralstonia solanacearum CFBP2957] Length = 376 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/367 (61%), Positives = 275/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 18 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 77 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 78 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 136 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 137 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 196 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 197 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 250 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA S+DG +TLNA Sbjct: 251 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFSADG-NTLNA 309 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 +SD + +T +GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 310 YSDVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 369 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 370 VGMRTRF 376 >ref|ZP_00943188.1| Outer membrane porin protein 32 precursor [Ralstonia solanacearum UW551] gb|EAP74224.1| Outer membrane porin protein 32 precursor [Ralstonia solanacearum UW551] Length = 437 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 225/367 (61%), Positives = 275/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 79 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 138 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 139 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 197 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 198 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 257 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 258 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 311 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA S+DG +TLNA Sbjct: 312 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFSADG-NTLNA 370 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 ++D + +T +GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 371 YADVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 430 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 431 VGMRTRF 437 >ref|YP_002258215.1| porin protein [Ralstonia solanacearum IPO1609] emb|CAQ60134.1| porin protein [Ralstonia solanacearum IPO1609] Length = 376 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 225/367 (61%), Positives = 275/367 (74%), Gaps = 9/367 (2%) Query: 14 VASYGNASAQSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGG 73 +A+ G + SSVT+YGLID TIST +N NA GAR TG WFSG+R G GKEDLGGG Sbjct: 18 LAATGAQAQTSSVTLYGLIDTTISTVSNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGG 77 Query: 74 TGAIFKLEAEYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGD 133 T AIFKLE+E+ TG MDTPGVLFNRD+WVGL +N TFGK+T GRQN L RD + IYGD Sbjct: 78 TSAIFKLESEFETPTGNMDTPGVLFNRDAWVGL-SNPTFGKLTFGRQNALARDVAGIYGD 136 Query: 134 AYGSSKLGYEEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEV 193 Y S+++ EEGGFTN NNFKQLIFY+GSATGTR +NGVVWKK+++ G G YQFGEV Sbjct: 137 PYTSAEVTLEEGGFTNVNNFKQLIFYAGSATGTRLNNGVVWKKLWDGGFFTGLAYQFGEV 196 Query: 194 AGAMNSGTTKAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLN 253 G + TT+ ALGYNG N+ +S F +A K+N T+ ++YSLGG+ I+ + R+N Sbjct: 197 PGQFSQNTTETAALGYNGGNFHLSAFAQQA----KVNGFTD--RSYSLGGNVILGMFRVN 250 Query: 254 AGYFHYTAEQ-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNA 312 AGYFHYT +Q A+G R D+A+TVS K+ P G DYE+GYQ+MKA NAA S+DG +TLNA Sbjct: 251 AGYFHYTGDQPAAIGNRKDDAYTVSLKIAPPGAFDYEIGYQIMKAGNAAFSADG-NTLNA 309 Query: 313 FSDATNSTVTGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELA 372 ++D + +T +GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VGS NG +QTE Sbjct: 310 YADVSTATASGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGSTNGHNSQTEFG 369 Query: 373 VGMRTRF 379 VGMRTRF Sbjct: 370 VGMRTRF 376 >ref|YP_001901152.1| porin [Ralstonia pickettii 12J] gb|ACD28720.1| porin Gram-negative type [Ralstonia pickettii 12J] Length = 375 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 221/358 (61%), Positives = 268/358 (74%), Gaps = 9/358 (2%) Query: 23 QSSVTVYGLIDATISTTNNANANGARLTGISTAWFSGNRLGFQGKEDLGGGTGAIFKLEA 82 QS+VT+YGLID TIST NN NA GAR TG WFSG+R G GKEDLGGGT AIFKLE+ Sbjct: 26 QSNVTLYGLIDTTISTVNNTNAAGARTTGFQVPWFSGSRWGLTGKEDLGGGTSAIFKLES 85 Query: 83 EYLVATGAMDTPGVLFNRDSWVGLQNNETFGKVTIGRQNTLVRDFSQIYGDAYGSSKLGY 142 E+ TG MDTPGVLFNRD+WVGL ++E+ GK+T GRQN + RD S IYGD Y S K+G Sbjct: 86 EFETPTGNMDTPGVLFNRDAWVGL-SSESLGKLTFGRQNAIARDISGIYGDPYTSEKVGL 144 Query: 143 EEGGFTNNNNFKQLIFYSGSATGTRYDNGVVWKKVFNNGIVVGAGYQFGEVAGAMNSGTT 202 +EGG+TN NNFKQLIFY+GSATGTR +NGVVWKK++ + GYQFGEV G GTT Sbjct: 145 DEGGYTNVNNFKQLIFYAGSATGTRMNNGVVWKKMWGGRFLTALGYQFGEVPGQFTQGTT 204 Query: 203 KAFALGYNGSNYVISGFYNEANTNNKLNSSTEKHKAYSLGGSYIMDLVRLNAGYFHYTAE 262 ++ ALGYNG N+ ++GF +A N ++ ++YS+GG+ I + R+NAGYFHYT E Sbjct: 205 ESLALGYNGDNFHLAGFAQQAKVNGFMD------RSYSVGGNVIFGMFRVNAGYFHYTGE 258 Query: 263 Q-GALGTRTDNAWTVSAKLTPQGVMDYELGYQVMKAKNAAISSDGSSTLNAFSDATNSTV 321 Q ALG R D+A+TVS K+ PQG DYE+GYQ+MKA NAA S+DG +TLNA+++ +T Sbjct: 259 QPAALGNRKDDAYTVSLKIAPQGAFDYEIGYQIMKAGNAAFSADG-NTLNAYANVAGATA 317 Query: 322 TGSGKKATLYASAFYHLSKRTELYVAADYMKLTDNYRVGSANGFKNQTELAVGMRTRF 379 GSG+K TLY S FYH+SKRTE YVAADYMKL D Y VG NG +QTE AVGMRTRF Sbjct: 318 AGSGRKNTLYGSVFYHVSKRTEFYVAADYMKLKDQYIVGGTNGHNSQTEFAVGMRTRF 375