BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0008.p (225 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751849.1| putative response regulator transcription re... 290 1e-76 ref|YP_585146.1| winged helix family two component transcription... 284 6e-75 ref|YP_001109885.1| two component transcriptional regulator [Bur... 284 8e-75 ref|ZP_03268711.1| two component transcriptional regulator, wing... 283 1e-74 ref|YP_285504.1| two component transcriptional regulator [Dechlo... 281 7e-74 >ref|YP_004751849.1| putative response regulator transcription regulator protein [Collimonas fungivorans Ter331] gb|AEK61026.1| putative response regulator transcription regulator protein [Collimonas fungivorans Ter331] Length = 238 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 148/224 (66%), Positives = 178/224 (79%), Gaps = 9/224 (4%) Query: 1 LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60 LVEDDRMI A++ AL+DAS+AVD V DG AA + +Q Y ++LLDLGLP DGF VLR Sbjct: 23 LVEDDRMIGDAVQTALRDASHAVDWVHDGAAALSAAASQSYDVMLLDLGLPRQDGFAVLR 82 Query: 61 NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120 +R P++I+TARDA+EDRI GLD GADDY++KPFEMGELLARMR AV Sbjct: 83 QLRQQGSALPLLIVTARDAVEDRIGGLDLGADDYLVKPFEMGELLARMR---------AV 133 Query: 121 LRRNGGSGNPILTNGAIHLIPATREITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDLE 180 +RR G+ NP+++NGA+ L P+TRE+T +G RLS+REFSL+ +LLLRPGAILSRQ+LE Sbjct: 134 VRRKAGNANPVMSNGALFLDPSTREVTADGIATRLSAREFSLLHALLLRPGAILSRQELE 193 Query: 181 DRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSKE 224 DRIYGWNEEVESNAVE+LIHSIRKKLG IKNVRGLGWMVSK+ Sbjct: 194 DRIYGWNEEVESNAVEFLIHSIRKKLGAASIKNVRGLGWMVSKQ 237 >ref|YP_585146.1| winged helix family two component transcriptional regulator (Tn6048) [Cupriavidus metallidurans CH34] ref|YP_586176.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|YP_587109.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|ZP_04763697.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ABF09877.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF10907.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF11840.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|EER59508.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98] gb|EGD05874.1| winged helix family two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 284 bits (727), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 10/224 (4%) Query: 1 LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60 LVEDD MI AI+ ALKDASYA D V DG+ A ++ Q Y LVLLDLGLP DG EVL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120 +IR + P P++IITARD L+DR+RGLD GADDYV KPF+M ELL ARMRAV Sbjct: 65 SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELL---------ARMRAV 115 Query: 121 LRRNGGSGNPILTNGAIHLIPATRE-ITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDL 179 LRR GG+ P+L+NG + L PAT+E +G ++LS+REFSL+Q+LL+RPGAILSR +L Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSEL 175 Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223 EDRIYGW EEVESNAVEYLIH++R+KLG ++IKNVRG+GWMVSK Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSK 219 >ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO60104.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 284 bits (726), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 144/224 (64%), Positives = 174/224 (77%), Gaps = 10/224 (4%) Query: 1 LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60 LVEDD MI AI+ ALKDASYA D V DG+ A ++ Q Y LVLLDLGLP DG EVL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120 +IR + P P++IITARD L+DR+RGLD GADDYV KPF+M ELL ARMRAV Sbjct: 65 SIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELL---------ARMRAV 115 Query: 121 LRRNGGSGNPILTNGAIHLIPATRE-ITFEGNTLRLSSREFSLMQSLLLRPGAILSRQDL 179 LRR GG+ P+L+NG + L PAT+E +G ++LS+REFSL+Q+LL+RPGAILSR +L Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSEL 175 Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223 EDRIYGW EEVESNAVEYLIH++R+KLG ++IKNVRG+GWMVSK Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSK 219 >ref|ZP_03268711.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gb|EDZ99706.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 221 Score = 283 bits (724), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 144/225 (64%), Positives = 175/225 (77%), Gaps = 10/225 (4%) Query: 1 LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60 LVEDD MI AI+ ALKDASYA D V DG+ A ++ Q Y LVLLDL LP DG EVL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGLEVLV 64 Query: 61 NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120 IR + P P++IITARD L+DR+RGLD GADDYV+KPF+M ELL AR+RAV Sbjct: 65 RIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELL---------ARIRAV 115 Query: 121 LRRNGGSGNPILTNGAIHLIPATREITFEGNT-LRLSSREFSLMQSLLLRPGAILSRQDL 179 LRR GGS P L+NG + L PAT+E + G + L+LS+REFSL+Q+LL+RPGAILSR +L Sbjct: 116 LRRKGGSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSEL 175 Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSKE 224 EDRIYGW EEVESNAVEYLIH++R+KLG+++IKNVRG+GWMVSK+ Sbjct: 176 EDRIYGWGEEVESNAVEYLIHALRRKLGSEVIKNVRGVGWMVSKD 220 >ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gb|AAZ47034.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 281 bits (718), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 141/224 (62%), Positives = 174/224 (77%), Gaps = 10/224 (4%) Query: 1 LVEDDRMIAQAIELALKDASYAVDCVSDGRAAEVSVRAQQYGLVLLDLGLPHLDGFEVLR 60 LVEDD MI +AI+ ALKDASYA D V +G+ A ++ Q Y LVLLDLGLP DG EVL Sbjct: 5 LVEDDFMIGEAIQGALKDASYAADWVKNGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLT 64 Query: 61 NIRDSEVPTPVVIITARDALEDRIRGLDAGADDYVIKPFEMGELLARMRXRGARARMRAV 120 +IR + P P++IITARD L DR+RGLD GADDY++KPFEM ELL ARMRAV Sbjct: 65 SIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELL---------ARMRAV 115 Query: 121 LRRNGGSGNPILTNGAIHLIPATREITFEGN-TLRLSSREFSLMQSLLLRPGAILSRQDL 179 LRR GG+ +L+NG + L PATRE + +++LS+REF+L+Q+LL+RPGAILSR DL Sbjct: 116 LRRKGGNATSVLSNGVVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSDL 175 Query: 180 EDRIYGWNEEVESNAVEYLIHSIRKKLGNQIIKNVRGLGWMVSK 223 EDRIYGW EEVESNAVE+LIH++R+KLG ++IKNVRG+GWMVSK Sbjct: 176 EDRIYGWGEEVESNAVEFLIHALRRKLGGEVIKNVRGVGWMVSK 219