BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0006.p         (92 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03268709.1| conserved hypothetical signal peptide protein...   131   4e-29
ref|YP_285506.1| putative signal peptide protein [Dechloromonas ...   130   5e-29
ref|YP_002231619.1| hypothetical protein BCAL2494 [Burkholderia ...   130   5e-29
ref|YP_001109883.1| putative signal peptide protein [Burkholderi...   129   1e-28
gb|EGD05876.1| hypothetical protein B1M_04279 [Burkholderia sp. ...   127   8e-28

>ref|ZP_03268709.1| conserved hypothetical signal peptide protein [Burkholderia sp.
           H160]
 gb|EDZ99704.1| conserved hypothetical signal peptide protein [Burkholderia sp.
           H160]
          Length = 150

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 72/87 (82%)

Query: 1   VSAFRAIAVDVSASVDKGDLPAAKTRIKDLETQWDSAEAGLKPRAAEDWHKLDKAIDRAL 60
           +SAF +IA DV+A VDKGDLPAAK RIKDLE  WDSAEAGLKPRAA+DWH LDKAID++L
Sbjct: 60  LSAFHSIATDVAAIVDKGDLPAAKARIKDLEVSWDSAEAGLKPRAADDWHALDKAIDKSL 119

Query: 61  EALRSGVPNQAECKTVMADLLKAFDRL 87
            ALR+  PNQA+CK  M +LLK FD L
Sbjct: 120 AALRADTPNQADCKAAMVNLLKTFDTL 146


>ref|YP_285506.1| putative signal peptide protein [Dechloromonas aromatica RCB]
 gb|AAZ47036.1| conserved hypothetical signal peptide protein [Dechloromonas
           aromatica RCB]
          Length = 150

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/87 (73%), Positives = 69/87 (79%)

Query: 1   VSAFRAIAVDVSASVDKGDLPAAKTRIKDLETQWDSAEAGLKPRAAEDWHKLDKAIDRAL 60
           +SAFR IA DVS  VDKGDLP AK RIKDLE  WDSAEAGLKPRAA+DWH+LDKAID AL
Sbjct: 60  LSAFRNIAADVSVIVDKGDLPTAKARIKDLEVAWDSAEAGLKPRAADDWHRLDKAIDPAL 119

Query: 61  EALRSGVPNQAECKTVMADLLKAFDRL 87
            ALR+  PNQ +CK  MADLL  FD L
Sbjct: 120 SALRADAPNQTDCKKAMADLLSTFDSL 146


>ref|YP_002231619.1| hypothetical protein BCAL2494 [Burkholderia cenocepacia J2315]
 emb|CAR52799.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 150

 Score =  130 bits (328), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 72/87 (82%)

Query: 1   VSAFRAIAVDVSASVDKGDLPAAKTRIKDLETQWDSAEAGLKPRAAEDWHKLDKAIDRAL 60
           ++AFR+IA DVS  VDKG+LPAAKTRIKDLE  WDSAEAGLKPRAA+DWH LDKAID+AL
Sbjct: 60  LTAFRSIATDVSTIVDKGNLPAAKTRIKDLEVAWDSAEAGLKPRAADDWHLLDKAIDKAL 119

Query: 61  EALRSGVPNQAECKTVMADLLKAFDRL 87
            ALR+  P+QA+CK  M  LLK FD L
Sbjct: 120 SALRADTPSQADCKAAMGTLLKTFDTL 146


>ref|YP_001109883.1| putative signal peptide protein [Burkholderia vietnamiensis G4]
 gb|ABO60102.1| conserved hypothetical signal peptide protein [Burkholderia
           vietnamiensis G4]
          Length = 149

 Score =  129 bits (324), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/87 (71%), Positives = 74/87 (85%)

Query: 1   VSAFRAIAVDVSASVDKGDLPAAKTRIKDLETQWDSAEAGLKPRAAEDWHKLDKAIDRAL 60
           +SAFR+IA DV+A+VDKGDLPAAK+RIKDLE  WDSAEAGLKPRAA+DWH LDKAID++L
Sbjct: 60  LSAFRSIATDVAATVDKGDLPAAKSRIKDLEVAWDSAEAGLKPRAADDWHLLDKAIDKSL 119

Query: 61  EALRSGVPNQAECKTVMADLLKAFDRL 87
            ALR+  P+QA+CK  M  LLK F+ L
Sbjct: 120 AALRADTPSQADCKAAMDALLKTFNTL 146


>gb|EGD05876.1| hypothetical protein B1M_04279 [Burkholderia sp. TJI49]
          Length = 149

 Score =  127 bits (318), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 72/87 (82%)

Query: 1   VSAFRAIAVDVSASVDKGDLPAAKTRIKDLETQWDSAEAGLKPRAAEDWHKLDKAIDRAL 60
           +SAFR+IA DV+A VDKGDLPAAK+RIKDLE  WDSAEAGLKPRAA+DWH LDKAID++L
Sbjct: 60  LSAFRSIATDVAAIVDKGDLPAAKSRIKDLEVAWDSAEAGLKPRAADDWHLLDKAIDKSL 119

Query: 61  EALRSGVPNQAECKTVMADLLKAFDRL 87
             LR+  P+QA+CK  M  LLK F+ L
Sbjct: 120 ATLRADTPSQADCKAAMDALLKTFNTL 146