BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0092.p (292 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum se... 440 e-121 ref|YP_001894431.1| major facilitator superfamily protein [Burkh... 306 3e-81 ref|YP_368159.1| major facilitator transporter [Burkholderia sp.... 305 7e-81 gb|EGD06433.1| major facilitator transporter [Burkholderia sp. T... 304 9e-81 ref|YP_001858651.1| major facilitator transporter [Burkholderia ... 304 1e-80 >ref|YP_003776601.1| arabinose efflux permease [Herbaspirillum seropedicae SmR1] gb|ADJ64693.1| arabinose efflux permease protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 223/286 (77%), Positives = 251/286 (87%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 MVARVVTAFCHAAFFGIGSVVAAELV +KRAQAVALMFTGLTVANILGVP GTA GHAA Sbjct: 95 MVARVVTAFCHAAFFGIGSVVAAELVAPQKRAQAVALMFTGLTVANILGVPLGTAFGHAA 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWRSTFGA+T IG+ A IMLW LPKKI MQ G+IF+EFR+I+ +VQL+LLTSTLAS+S Sbjct: 155 GWRSTFGAVTAIGVLAAIMLWTMLPKKIPMQAGNIFQEFRSIIDTRVQLSLLTSTLASIS 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 MFSV+TYIAYILLDVTGFT QESWVLLLFGAGITVGGL+GG+LADW+LMPV+ +F+CI Sbjct: 215 MFSVITYIAYILLDVTGFTTQQESWVLLLFGAGITVGGLVGGKLADWKLMPVMCGVFLCI 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 A++L FS +S Y PTL TMF WGAF+FAVVP AQIRVLD A+ APNLASTLNQGAFN+ Sbjct: 275 AVVLGLFSITSHYKWPTLATMFAWGAFAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLPLLGAGVSVLGFLTVLTSALLDRR 286 GNATGAW+GGLAISAGLPLTDLPL+GA ++LG TV SA LD+R Sbjct: 335 GNATGAWVGGLAISAGLPLTDLPLIGAFFALLGLATVAFSASLDKR 380 >ref|YP_001894431.1| major facilitator superfamily protein [Burkholderia phytofirmans PsJN] gb|ACD15207.1| major facilitator superfamily MFS_1 [Burkholderia phytofirmans PsJN] Length = 388 Score = 306 bits (784), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 171/291 (58%), Positives = 212/291 (72%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 M AR+VTAFCH AFFGIGSVVAA LV +RAQA+ALMFTGLT+AN+LGVP GTALG A Sbjct: 95 MAARIVTAFCHGAFFGIGSVVAAGLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAV 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWR+TF A+T IG+ A L +CLP KI MQ S+ +EF + +PQV + L S LAS S Sbjct: 155 GWRATFWAVTGIGVVAAAALAVCLPAKIEMQKASLVREFSVLKNPQVLMVLGISVLASAS 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 +FS TYI IL DVTGFT H + VLLLFG G+TVG +GG+LADWRLMP L + + I Sbjct: 215 LFSTFTYITPILEDVTGFTPHAVTLVLLLFGLGLTVGSTLGGKLADWRLMPSLVAFLLAI 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 +IL F+ + +P +IT+F+WG +FA+VP Q+ ++D+A APNLASTLNQGAFN+ Sbjct: 275 VVILTIFAGTMHAEIPAMITIFVWGILAFAIVPPLQMLIVDRASHAPNLASTLNQGAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLPLLGAGVSVLGFLTVLTSALLDRRAARVA 291 GNATGAWLGG+AI AG PLT LP +G S+ + L S +DRRA R+A Sbjct: 335 GNATGAWLGGMAIGAGAPLTTLPWVGVATSIGALVLTLWSVSIDRRAQRMA 385 >ref|YP_368159.1| major facilitator transporter [Burkholderia sp. 383] gb|ABB07515.1| Major facilitator superfamily (MFS_1) transporter [Burkholderia sp. 383] Length = 389 Score = 305 bits (780), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 171/290 (58%), Positives = 211/290 (72%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 M ARVVTAFCH AFFGIGSVVA+ LV +RAQA+ALMFTGLT+AN+LGVP GTALG A Sbjct: 95 MAARVVTAFCHGAFFGIGSVVASNLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAY 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWR+TF A+T IG+AA L +CLPK +AM SI +EF + HPQV + L S LAS S Sbjct: 155 GWRATFWAVTGIGIAAAAALAVCLPKNLAMPDTSITREFSVLKHPQVLMVLGISVLASAS 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 +FSV TYI IL DVTGF+ Q ++VLLLFG G+TVGG +GG+LADWR MP L + I Sbjct: 215 LFSVFTYITPILEDVTGFSPRQVTYVLLLFGLGLTVGGTLGGKLADWRRMPSLIATLALI 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 +IL F+ + P L T+F+WG +FA+VP QI ++D+A DAPNLASTLNQGAFN+ Sbjct: 275 GVILALFAGTMHLPFAALATIFVWGILAFAIVPPLQILIVDRASDAPNLASTLNQGAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLPLLGAGVSVLGFLTVLTSALLDRRAARV 290 GNATGAWLGG+AI +G+ L +LP +G ++V L SA L+RR V Sbjct: 335 GNATGAWLGGMAIGSGVSLVNLPWVGIAMAVAALALTLWSASLERRPVSV 384 >gb|EGD06433.1| major facilitator transporter [Burkholderia sp. TJI49] Length = 389 Score = 304 bits (779), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 171/290 (58%), Positives = 211/290 (72%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 M ARVVTAFCH AFFGIGSVVA+ LV +RAQA+ALMFTGLT+AN+LGVP GTALG A Sbjct: 95 MAARVVTAFCHGAFFGIGSVVASNLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAY 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWR+TF A+T IG+AA L +CLPK +AM SI +EF + HPQV + L S LAS S Sbjct: 155 GWRATFWAVTGIGIAAAAALAVCLPKHLAMPDTSITREFGVLKHPQVLMVLGISVLASAS 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 +FSV TYI IL DVTGF+ Q ++VLLLFG G+TVGG +GGRLADWR MP L + I Sbjct: 215 LFSVFTYITPILEDVTGFSPRQVTYVLLLFGLGLTVGGTLGGRLADWRRMPSLIATLALI 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 +++L F+ + P L T+F+WG +FA+VP QI ++D+A DAPNLASTLNQGAFN+ Sbjct: 275 SVVLATFAGTMHLPFAALATIFVWGILAFAIVPPLQILIVDRASDAPNLASTLNQGAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLPLLGAGVSVLGFLTVLTSALLDRRAARV 290 GNATGAWLGG+AI +G+ L +LP +G + V L SA L+RR V Sbjct: 335 GNATGAWLGGMAIGSGVSLVNLPWVGVAMVVAALALTLWSASLERRPVAV 384 >ref|YP_001858651.1| major facilitator transporter [Burkholderia phymatum STM815] gb|ACC71605.1| major facilitator superfamily MFS_1 [Burkholderia phymatum STM815] Length = 385 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 160/263 (60%), Positives = 196/263 (74%) Query: 1 MVARVVTAFCHAAFFGIGSVVAAELVPREKRAQAVALMFTGLTVANILGVPFGTALGHAA 60 M AR+VTAFCH AFFGIGSVVAA LV +RAQA+ALMFTGLT+AN+LGVP GTALG A Sbjct: 95 MAARIVTAFCHGAFFGIGSVVAAGLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAV 154 Query: 61 GWRSTFGAITVIGLAAVIMLWICLPKKIAMQGGSIFKEFRAIVHPQVQLALLTSTLASVS 120 GWR+TF A+TVIG+ A + L +CLP KI MQ S+ EF + +PQV + L TS LAS S Sbjct: 155 GWRATFWAVTVIGVLAAVALALCLPPKIEMQKASLIHEFTVLKNPQVLMVLGTSVLASAS 214 Query: 121 MFSVLTYIAYILLDVTGFTAHQESWVLLLFGAGITVGGLIGGRLADWRLMPVLFSMFVCI 180 +FS TYI IL DVTGFT H + VLLLFG G+TVG +GG+LADWR + L S + I Sbjct: 215 LFSTFTYITPILEDVTGFTPHAVTMVLLLFGLGLTVGSTLGGKLADWRPVQSLLSFLLAI 274 Query: 181 ALILVQFSWSSRYPLPTLITMFIWGAFSFAVVPAAQIRVLDKAKDAPNLASTLNQGAFNV 240 IL F+ + +P ++T+F+WG +FA+VP Q+ ++D+A APNLASTLNQGAFN+ Sbjct: 275 VAILSIFAMTMHSEIPAMVTIFLWGVLAFAIVPPLQMLIVDRASSAPNLASTLNQGAFNL 334 Query: 241 GNATGAWLGGLAISAGLPLTDLP 263 GNATGAWLGG+AI AG PLT LP Sbjct: 335 GNATGAWLGGMAIGAGAPLTSLP 357