BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0085.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774458.1| sugar ABC transporter periplasmic protein [H... 595 e-168 ref|YP_004752983.1| periplasmic binding protein/LacI transcripti... 574 e-162 ref|YP_001892625.1| LacI family transcriptional regulator [Ralst... 514 e-144 ref|YP_004235356.1| periplasmic-binding protein/LacI transcripti... 511 e-143 ref|ZP_07673693.1| periplasmic ribose-binding protein [Ralstonia... 511 e-143 >ref|YP_003774458.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62550.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust. Identities = 292/324 (90%), Positives = 309/324 (95%), Gaps = 1/324 (0%) Query: 1 MKMTRRTLLGAAVCMTLGWSALS-GAVAADKPLTMGFSQVGAESEWRTANTASIKDAAKK 59 M RR LLGAA+C++LG SA+S A AADKPLTMGFSQVGAESEWRTANT SIKDAAK+ Sbjct: 1 MNSKRRALLGAAICLSLGSSAMSLPAFAADKPLTMGFSQVGAESEWRTANTVSIKDAAKQ 60 Query: 60 AGVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLREAKAAKIPVILTD 119 AGVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGW+TVLREAKAAKIPVILTD Sbjct: 61 AGVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWETVLREAKAAKIPVILTD 120 Query: 120 RAVNVSDKSLYVTFIGSDFVEEGRRAARWLLDRAKTLPAGDINIVELQGTVGSAPAIDRK 179 RAVNVSDKSLYVTFIGSDFVEEGRRA RWLL++AK++PAGDINIVELQGTVGSAPAIDRK Sbjct: 121 RAVNVSDKSLYVTFIGSDFVEEGRRAGRWLLEKAKSMPAGDINIVELQGTVGSAPAIDRK 180 Query: 180 AGFEQEIKANPNLKIIRSQTGDFTRAKGKEVMEAFLKADGKKINVLYAHNDDMAIGAIQA 239 AGFE+ IK P LKIIRSQTGDFTRAKGKEVMEAFLKA+GKKINVLYAHNDDMAIGAIQA Sbjct: 181 AGFEEVIKGEPRLKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQA 240 Query: 240 IEEAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMSIAKDVKAGKEVP 299 IEEAG+KPGKDI++ISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLM IAKD+KAGKEVP Sbjct: 241 IEEAGMKPGKDIIIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMQIAKDIKAGKEVP 300 Query: 300 KRITTEEGVFPAEVAAKEFPNRKY 323 KRITTEEG+FPAEVAAKEFPNRKY Sbjct: 301 KRITTEEGIFPAEVAAKEFPNRKY 324 >ref|YP_004752983.1| periplasmic binding protein/LacI transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62160.1| periplasmic binding protein/LacI transcriptional regulator [Collimonas fungivorans Ter331] Length = 326 Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust. Identities = 283/323 (87%), Positives = 301/323 (93%), Gaps = 1/323 (0%) Query: 1 MKMTRRTLLGAAVCMTLGWSALSGAVAADKPLTMGFSQVGAESEWRTANTASIKDAAKKA 60 MKMTRRT+L AA+C+ LG+ ++G+ A+KP+ +GFSQVGAESEWRTANTASIKDAAK+A Sbjct: 5 MKMTRRTVLSAALCLGLGF-GIAGSAYAEKPVVLGFSQVGAESEWRTANTASIKDAAKQA 63 Query: 61 GVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLREAKAAKIPVILTDR 120 GV LKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVL EAKAAKIPVILTDR Sbjct: 64 GVTLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLGEAKAAKIPVILTDR 123 Query: 121 AVNVSDKSLYVTFIGSDFVEEGRRAARWLLDRAKTLPAGDINIVELQGTVGSAPAIDRKA 180 AV+ DKSLYVTFIGSDFVEEGRRA RWLL+RAKT+PAGDINIVELQGTVGSAPAIDRKA Sbjct: 124 AVDAKDKSLYVTFIGSDFVEEGRRAGRWLLERAKTMPAGDINIVELQGTVGSAPAIDRKA 183 Query: 181 GFEQEIKANPNLKIIRSQTGDFTRAKGKEVMEAFLKADGKKINVLYAHNDDMAIGAIQAI 240 GF + I ANP LK+IRSQTGDFTRAKGKEVMEAFLK DGKKINVLYAHNDDMAIGAIQAI Sbjct: 184 GFAEIIAANPKLKVIRSQTGDFTRAKGKEVMEAFLKTDGKKINVLYAHNDDMAIGAIQAI 243 Query: 241 EEAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMSIAKDVKAGKEVPK 300 EEAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLM +AK V AG+ VPK Sbjct: 244 EEAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMKVAKQVLAGETVPK 303 Query: 301 RITTEEGVFPAEVAAKEFPNRKY 323 RITTEE VFPAEVAAKEFPNRKY Sbjct: 304 RITTEESVFPAEVAAKEFPNRKY 326 >ref|YP_001892625.1| LacI family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984127.1| periplasmic binding protein/LacI transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29198.1| periplasmic binding protein/LacI transcriptional regulator [Ralstonia pickettii 12J] gb|ACS65455.1| periplasmic binding protein/LacI transcriptional regulator [Ralstonia pickettii 12D] Length = 328 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 257/323 (79%), Positives = 280/323 (86%), Gaps = 8/323 (2%) Query: 5 RRTLLG----AAVCMTLGWSALSGAVAADKPLTMGFSQVGAESEWRTANTASIKDAAKKA 60 RRT+L A V + G + + A AADK TMGF+QVGAESEWRTAN+ SIK AK Sbjct: 10 RRTVLTFLATAGVLLATGLA--TAAHAADKSFTMGFAQVGAESEWRTANSESIKSTAKAQ 67 Query: 61 GVNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLREAKAAKIPVILTDR 120 GVNLKF+DAQQKQENQ+KAIRS+IAQKVDVIAFSPVVESGWDTVL+EAKAAKIPVILTDR Sbjct: 68 GVNLKFSDAQQKQENQIKAIRSYIAQKVDVIAFSPVVESGWDTVLQEAKAAKIPVILTDR 127 Query: 121 AVNVSDKSLYVTFIGSDFVEEGRRAARWLLDRAKTLPAGDINIVELQGTVGSAPAIDRKA 180 ++ D SLY TFIGSDFVEEGR+A RWLL+ K P GD+NIVELQGTVGSAPAIDRK Sbjct: 128 GIDSKDTSLYTTFIGSDFVEEGRKAGRWLLENVK--PKGDVNIVELQGTVGSAPAIDRKR 185 Query: 181 GFEQEIKANPNLKIIRSQTGDFTRAKGKEVMEAFLKADGKKINVLYAHNDDMAIGAIQAI 240 GFE+ IKA+P+ KIIRSQTGDFTRAKGKEVMEAFLKA+GKKINVLYAHNDDMAIGAIQAI Sbjct: 186 GFEEIIKADPHYKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAI 245 Query: 241 EEAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMSIAKDVKAGKEVPK 300 EEAGLKPGKDI +ISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLM A+ V AGK VPK Sbjct: 246 EEAGLKPGKDITIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMDTARAVLAGKTVPK 305 Query: 301 RITTEEGVFPAEVAAKEFPNRKY 323 RI T+EG+FP EVAAKEFPNRKY Sbjct: 306 RIVTKEGIFPMEVAAKEFPNRKY 328 >ref|YP_004235356.1| periplasmic-binding protein/LacI transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX46789.1| periplasmic binding protein/LacI transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] Length = 322 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/322 (78%), Positives = 281/322 (87%), Gaps = 2/322 (0%) Query: 2 KMTRRTLLGAAVCMTLGWSALSGAVAADKPLTMGFSQVGAESEWRTANTASIKDAAKKAG 61 K+TRRTL A C + + L A A KP+ +GFSQVGAESEWRTANT SIK AAK AG Sbjct: 3 KLTRRTLATALACAPVA-ALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAAKDAG 61 Query: 62 VNLKFADAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLREAKAAKIPVILTDRA 121 + LKF+DAQQKQENQ+KAIRSFIAQ+VDVIAFSPVVESGW+ VLREAKAAKIPV+LTDRA Sbjct: 62 IELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDRA 121 Query: 122 VNVSDKSLYVTFIGSDFVEEGRRAARWLLDRAKTLPAGDINIVELQGTVGSAPAIDRKAG 181 VN D SLYVTF+GSDFVEEGR+A RWL+++ K GD+NIVELQGTVGSAPAIDRK G Sbjct: 122 VNTKDTSLYVTFMGSDFVEEGRKAGRWLVEKMKD-SKGDVNIVELQGTVGSAPAIDRKKG 180 Query: 182 FEQEIKANPNLKIIRSQTGDFTRAKGKEVMEAFLKADGKKINVLYAHNDDMAIGAIQAIE 241 FE+ +KA+P KIIRSQTGDFTRAKGKEVMEAFLKA+GKKINVLYAHNDDMAIGAIQAIE Sbjct: 181 FEEVVKADPKFKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIE 240 Query: 242 EAGLKPGKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMSIAKDVKAGKEVPKR 301 EAG+KPGKDI++ISID VKGAFEAMMAGKLNVTVECSPLLGPQLM+ KD+KAGK VPKR Sbjct: 241 EAGMKPGKDIIIISIDAVKGAFEAMMAGKLNVTVECSPLLGPQLMAAVKDIKAGKTVPKR 300 Query: 302 ITTEEGVFPAEVAAKEFPNRKY 323 I TEEG+FP E AA+EFP RKY Sbjct: 301 IVTEEGIFPMETAAQEFPKRKY 322 >ref|ZP_07673693.1| periplasmic ribose-binding protein [Ralstonia sp. 5_7_47FAA] gb|EFP67897.1| periplasmic ribose-binding protein [Ralstonia sp. 5_7_47FAA] Length = 315 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 254/316 (80%), Positives = 277/316 (87%), Gaps = 4/316 (1%) Query: 8 LLGAAVCMTLGWSALSGAVAADKPLTMGFSQVGAESEWRTANTASIKDAAKKAGVNLKFA 67 L A V +T G + + A AADK TMGF+QVGAESEWRTAN+ SIK AK GVNLKF+ Sbjct: 4 LATAGVLLTTGLA--TAAHAADKSFTMGFAQVGAESEWRTANSESIKSTAKAQGVNLKFS 61 Query: 68 DAQQKQENQVKAIRSFIAQKVDVIAFSPVVESGWDTVLREAKAAKIPVILTDRAVNVSDK 127 DAQQKQENQ+KAIRS+IAQKVDVIAFSPVVESGWDTVL+EAKAAKIPVILTDR ++ D Sbjct: 62 DAQQKQENQIKAIRSYIAQKVDVIAFSPVVESGWDTVLQEAKAAKIPVILTDRGIDSKDT 121 Query: 128 SLYVTFIGSDFVEEGRRAARWLLDRAKTLPAGDINIVELQGTVGSAPAIDRKAGFEQEIK 187 LY TFIGSDFVEEGR+A RWLL+ K P GD+NIVELQGTVGSAPAIDRK GFE+ IK Sbjct: 122 WLYTTFIGSDFVEEGRKAGRWLLENVK--PKGDVNIVELQGTVGSAPAIDRKRGFEEIIK 179 Query: 188 ANPNLKIIRSQTGDFTRAKGKEVMEAFLKADGKKINVLYAHNDDMAIGAIQAIEEAGLKP 247 A+P+ KIIRSQTGDFTRAKGKEVMEAFLKA+GKKINVLYAHNDDMAIGAIQAIEEAGLKP Sbjct: 180 ADPHYKIIRSQTGDFTRAKGKEVMEAFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKP 239 Query: 248 GKDILVISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMSIAKDVKAGKEVPKRITTEEG 307 GKDI++ISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLM A+ V AGK VPKRI T+EG Sbjct: 240 GKDIVIISIDGVKGAFEAMMAGKLNVTVECSPLLGPQLMDTARAVLAGKTVPKRIVTKEG 299 Query: 308 VFPAEVAAKEFPNRKY 323 +FP EVAAKEFPNRKY Sbjct: 300 IFPMEVAAKEFPNRKY 315