BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0083.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774460.1| sugar ABC transporter permease [Herbaspirill... 581 e-164 ref|YP_004752981.1| inner-membrane translocator [Collimonas fung... 533 e-149 ref|ZP_07673691.1| ribose transport system permease protein RbsC... 399 e-109 emb|CBA30240.1| Inner membrane ABC transporter permease protein ... 398 e-109 ref|YP_001613945.1| ribose/xylose/arabinose/galactoside ABC-type... 395 e-108 >ref|YP_003774460.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62552.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 297/361 (82%), Positives = 331/361 (91%), Gaps = 3/361 (0%) Query: 1 MSASMNSNLVSNRNPSSGAAVNRLRRAFFHPLSRPLGALAVLLLIDFFMIPGFFRIEMKD 60 MSASM+S L+ + S+G+ + L HPL RPLGALAVLLLIDF ++PGFF++E+KD Sbjct: 1 MSASMDSKLIPDTAASAGSPM--LAGLLRHPLVRPLGALAVLLLIDFLLVPGFFKLEIKD 58 Query: 61 GHLYGSVIDIVNRAAPLMLAALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNN 120 GHLYG++IDI+NRAAPLMLAALGMTLVIATRG+DISVGAVVAISG +AA+LIGG MVV + Sbjct: 59 GHLYGALIDIINRAAPLMLAALGMTLVIATRGVDISVGAVVAISGAVAAILIGGKMVVVD 118 Query: 121 GVPEYVSNIPMGWALAAALGVALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTD 180 GV +YVSN+PM WAL AA+G ALLCGAWNGLLVA LGLQPIIATLILMVAGRGLAQLLTD Sbjct: 119 GVSQYVSNVPMVWALCAAMGAALLCGAWNGLLVAGLGLQPIIATLILMVAGRGLAQLLTD 178 Query: 181 GQIITVYYKPFFYLGSGYLWGLPFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASR 240 GQI+TVYYKPFF+LG GYL+GLPFSL+I A MFV+LALLM+KTALGLFI+SVGINPVASR Sbjct: 179 GQIVTVYYKPFFFLGGGYLFGLPFSLYIAAAMFVLLALLMKKTALGLFIESVGINPVASR 238 Query: 241 LAGIRTAALIFFVYIFCSLCAGLAGLMISANIKSADANNAGLLLELDAILAVTLGGTSLA 300 LAGIRTAALIFFVY+FCS CAGLAGLMI++NIKSADANNAGLLLELDAILAVTLGGTSLA Sbjct: 239 LAGIRTAALIFFVYMFCSACAGLAGLMIASNIKSADANNAGLLLELDAILAVTLGGTSLA 298 Query: 301 GGKFSLVGSVIGALIIQALTYTIYSLGVPPEVNMVVKSVVVFLVCLSQSPEFRR-LRLFK 359 GGKFSLVGSVIGALIIQ LTYTIYSLGVPPEVNMVVKS+VVFLVCLSQSP+FRR LR+ K Sbjct: 299 GGKFSLVGSVIGALIIQTLTYTIYSLGVPPEVNMVVKSIVVFLVCLSQSPQFRRMLRMSK 358 Query: 360 S 360 S Sbjct: 359 S 359 >ref|YP_004752981.1| inner-membrane translocator [Collimonas fungivorans Ter331] gb|AEK62158.1| inner-membrane translocator [Collimonas fungivorans Ter331] Length = 382 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 293/358 (81%), Positives = 325/358 (90%), Gaps = 3/358 (0%) Query: 1 MSASMNSNLVSN---RNPSSGAAVNRLRRAFFHPLSRPLGALAVLLLIDFFMIPGFFRIE 57 MS +NS+ +S ++ +S + RLR +PL RPL ALA+LLLIDFFMIPGFFR+E Sbjct: 3 MSIPLNSDPLSGARLQSDTSPSLAVRLRVMLRNPLLRPLAALALLLLIDFFMIPGFFRLE 62 Query: 58 MKDGHLYGSVIDIVNRAAPLMLAALGMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMV 117 KDGHLYGS+IDIVNRAAPL+L ALGMTLVIATRGIDISVGAVVAISGT+AAMLIGGTM Sbjct: 63 WKDGHLYGSLIDIVNRAAPLILTALGMTLVIATRGIDISVGAVVAISGTVAAMLIGGTME 122 Query: 118 VNNGVPEYVSNIPMGWALAAALGVALLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQL 177 ++NG+PEY S IPM WA+AAA+G ALLCG WNG LVATLGLQPIIATLILMV GRGLAQL Sbjct: 123 MHNGIPEYASRIPMVWAIAAAMGAALLCGVWNGFLVATLGLQPIIATLILMVGGRGLAQL 182 Query: 178 LTDGQIITVYYKPFFYLGSGYLWGLPFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPV 237 LTDGQI+TVYYKPFFY+GSGYL+GLPFSLFI G+FV++AL+MRKTALGLFIQ+VGINPV Sbjct: 183 LTDGQIVTVYYKPFFYIGSGYLFGLPFSLFIAIGVFVIVALMMRKTALGLFIQAVGINPV 242 Query: 238 ASRLAGIRTAALIFFVYIFCSLCAGLAGLMISANIKSADANNAGLLLELDAILAVTLGGT 297 A+RLAGIRTAALIFFVY+FCS CAG+AGLMIS+NIKSADANNAGLLLELDAILAVTLGGT Sbjct: 243 AARLAGIRTAALIFFVYMFCSACAGVAGLMISSNIKSADANNAGLLLELDAILAVTLGGT 302 Query: 298 SLAGGKFSLVGSVIGALIIQALTYTIYSLGVPPEVNMVVKSVVVFLVCLSQSPEFRRL 355 SLAGGKFSLVGSVIGALIIQALTYTIYS+GVPPEVNMVVKS+VVF VCLSQSPEFR L Sbjct: 303 SLAGGKFSLVGSVIGALIIQALTYTIYSMGVPPEVNMVVKSIVVFAVCLSQSPEFRGL 360 >ref|ZP_07673691.1| ribose transport system permease protein RbsC [Ralstonia sp. 5_7_47FAA] gb|EFP67895.1| ribose transport system permease protein RbsC [Ralstonia sp. 5_7_47FAA] Length = 349 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 230/342 (67%), Positives = 281/342 (82%), Gaps = 1/342 (0%) Query: 23 RLRRAFFHPLSRPLGALAVLLLIDFFMIPGFFRIEMKDGHLYGSVIDIVNRAAPLMLAAL 82 LR H L P L +L L++ + P FF +++++GHLYGS+IDI+NRAAPLML +L Sbjct: 5 NLRALTGHRLFWPCVTLLLLCLLNAWFNPHFFHLDVRNGHLYGSLIDILNRAAPLMLVSL 64 Query: 83 GMTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAAALGVA 142 GMTLVIA GIDIS GAVVAISG IAA L+GGT+VV NG+P YV+ +P+ AL AA+G A Sbjct: 65 GMTLVIAVGGIDISAGAVVAISGAIAASLVGGTLVVQNGLPVYVTKVPLLLALLAAVGAA 124 Query: 143 LLCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGL 202 L+CG WNGLLVA G+QPIIATLILMVAGRG+AQL+T GQIITVYY+PFF++G+GYL+GL Sbjct: 125 LVCGMWNGLLVAGAGMQPIIATLILMVAGRGVAQLITGGQIITVYYEPFFFVGNGYLFGL 184 Query: 203 PFSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGIRTAALIFFVYIFCSLCAG 262 PF L+I A + +L LLM +TALGLFI++VGINPVA+RLAG+ T AL+F +Y FC AG Sbjct: 185 PFGLYIAAAVLGLLLLLMHRTALGLFIEAVGINPVAARLAGLNTKALLFGIYAFCGAMAG 244 Query: 263 LAGLMISANIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQALTYT 322 +AGL+I +N+KSAD NNAGLLLELDAILAVTLGGTSLAGGKFSL GSVIGALIIQ LTY Sbjct: 245 VAGLIICSNVKSADGNNAGLLLELDAILAVTLGGTSLAGGKFSLWGSVIGALIIQTLTYA 304 Query: 323 IYSLGVPPEVNMVVKSVVVFLVCLSQSPEFRRLRLFKSGNQA 364 IYS+GVPPE+N+VVK+VVVF VCL+QS FR + LF+ ++A Sbjct: 305 IYSMGVPPEINLVVKAVVVFAVCLAQSEAFRSM-LFQRHSRA 345 >emb|CBA30240.1| Inner membrane ABC transporter permease protein ytfT [Curvibacter putative symbiont of Hydra magnipapillata] Length = 355 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/331 (64%), Positives = 272/331 (82%) Query: 24 LRRAFFHPLSRPLGALAVLLLIDFFMIPGFFRIEMKDGHLYGSVIDIVNRAAPLMLAALG 83 ++R HPL P+ L ++L+++ + PGF+ ++ +DGHLYGSVIDI+NRAAPLML +LG Sbjct: 10 VKRVQAHPLLWPVVTLVLILMVNASLNPGFWMLQWRDGHLYGSVIDILNRAAPLMLVSLG 69 Query: 84 MTLVIATRGIDISVGAVVAISGTIAAMLIGGTMVVNNGVPEYVSNIPMGWALAAALGVAL 143 MTLVIATRGIDISVGA VAIS +AA+++GG +V+ +GV ++VS PM A+ AL AL Sbjct: 70 MTLVIATRGIDISVGATVAISAAVAALMVGGKLVITDGVAQHVSRFPMWLAIVCALITAL 129 Query: 144 LCGAWNGLLVATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGLP 203 CG WNG+LVA +GLQPIIATLILMVAGRG+AQLLTDGQI+TVYY P+FY+GSGYLWGLP Sbjct: 130 ACGLWNGVLVAKIGLQPIIATLILMVAGRGVAQLLTDGQIVTVYYPPYFYIGSGYLWGLP 189 Query: 204 FSLFIVAGMFVVLALLMRKTALGLFIQSVGINPVASRLAGIRTAALIFFVYIFCSLCAGL 263 F+LFI +++++ L + +TALGLFIQ++GINP A+R+AG+R + VY FC L AG+ Sbjct: 190 FALFIAGFVYLLMHLAVTRTALGLFIQAIGINPAAARVAGVRERLISICVYAFCGLTAGI 249 Query: 264 AGLMISANIKSADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQALTYTI 323 AGL+IS+N+KSAD NNAG LLELDAILAVTLGGT L GG+F+L GS+IGALIIQ LT TI Sbjct: 250 AGLIISSNVKSADGNNAGNLLELDAILAVTLGGTLLTGGRFTLAGSMIGALIIQTLTSTI 309 Query: 324 YSLGVPPEVNMVVKSVVVFLVCLSQSPEFRR 354 YS+GVPPE+N+VVK+ VVF+V L QS EFRR Sbjct: 310 YSIGVPPEINLVVKAAVVFVVMLMQSAEFRR 340 >ref|YP_001613945.1| ribose/xylose/arabinose/galactoside ABC-type transporter permease [Sorangium cellulosum 'So ce 56'] emb|CAN93465.1| put.Ribose/xylose/arabinose/galactoside ABC-type transport system permease [Sorangium cellulosum 'So ce 56'] Length = 352 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 207/322 (64%), Positives = 255/322 (79%), Gaps = 1/322 (0%) Query: 35 PLGALAVLLLIDFFMIPGFFRIEMKDGHLYGSVIDIVNRAAPLMLAALGMTLVIATRGID 94 PL L LLL + P FF I +KDGHLYGSVIDI+NRA+PLM+ A+G+TLVIATRGID Sbjct: 19 PLAMLGSLLLFNLVSNPQFFAITVKDGHLYGSVIDILNRASPLMIIAMGLTLVIATRGID 78 Query: 95 ISVGAVVAISGTIAAMLIGGTMVVNNGVP-EYVSNIPMGWALAAALGVALLCGAWNGLLV 153 ISVGAVVAISG +AA+LIGG + + G + +P+ + +ALGVAL G WNG LV Sbjct: 79 ISVGAVVAISGAVAAVLIGGELSPSGGTGMADATRVPLPIVVWSALGVALALGMWNGTLV 138 Query: 154 ATLGLQPIIATLILMVAGRGLAQLLTDGQIITVYYKPFFYLGSGYLWGLPFSLFIVAGMF 213 + G+QPIIATLIL+V GRG+AQL+T GQIIT+YY P+ +G+G+L G+P SLFIVAG+ Sbjct: 139 SIFGMQPIIATLILLVTGRGIAQLITGGQIITIYYSPYHVIGNGFLLGIPVSLFIVAGVG 198 Query: 214 VVLALLMRKTALGLFIQSVGINPVASRLAGIRTAALIFFVYIFCSLCAGLAGLMISANIK 273 V+ LL RKTALG+FI+++G+NPVASRLAGIR + F Y C LCAG+AGL++S+N+K Sbjct: 199 AVVWLLTRKTALGMFIEAIGVNPVASRLAGIRARTITFACYAVCGLCAGIAGLIVSSNVK 258 Query: 274 SADANNAGLLLELDAILAVTLGGTSLAGGKFSLVGSVIGALIIQALTYTIYSLGVPPEVN 333 SAD NNAGLL ELDAILAV LGGTSL+GGKF+L GSVIGALIIQ LT TIYS GVPPEVN Sbjct: 259 SADGNNAGLLFELDAILAVVLGGTSLSGGKFTLAGSVIGALIIQTLTTTIYSAGVPPEVN 318 Query: 334 MVVKSVVVFLVCLSQSPEFRRL 355 +VVK++VVFL+ + QS + R L Sbjct: 319 LVVKALVVFLITVVQSQKVRDL 340