BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0082.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752980.1| putative sugar uptake ABC transporter permea... 522 e-146 ref|YP_003774461.1| sugar ABC transporter permease [Herbaspirill... 451 e-125 ref|YP_004153448.1| inner-membrane translocator [Variovorax para... 385 e-105 ref|YP_002942967.1| ABC transporter permease [Variovorax paradox... 379 e-103 ref|ZP_01466751.1| putative sugar uptake ABC transporter permeas... 378 e-102 >ref|YP_004752980.1| putative sugar uptake ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62157.1| putative sugar uptake ABC transporter permease protein [Collimonas fungivorans Ter331] Length = 340 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/342 (84%), Positives = 305/342 (89%), Gaps = 11/342 (3%) Query: 6 SLFHQLLATPYFTSLVTVALLVVLFAMGSVAYDGFFSVQVVLNLLIDNAFLLVIGIGMTF 65 L Q L++PYFTSL TVALL+V+FAMGS AY GFFS+QVVLNLLIDNAFLLVI IGMTF Sbjct: 2 KLLRQSLSSPYFTSLATVALLIVMFAMGSFAYTGFFSLQVVLNLLIDNAFLLVIAIGMTF 61 Query: 66 VILSGGIDLSVGSVLALTTMISAYMLQSWHWHPLLVIVCVLALGGLFGAAMGVLIHFFKL 125 VILSGGIDLSVGSVLALTTMISAY+LQSWHW PLLVI CVL +G FGA MG LIHFFKL Sbjct: 62 VILSGGIDLSVGSVLALTTMISAYLLQSWHWPPLLVIACVLLIGSAFGALMGALIHFFKL 121 Query: 126 QPFIVTLAGMFLARGLCYLISINSITIDDPLFVAMSQTRLE-FGLGDAFVSPSVVIAVLM 184 Q FIVTLAGMFLARGLCYLISINSITID PL+V +SQ R++ FG AFVSPSVVIAVLM Sbjct: 122 QAFIVTLAGMFLARGLCYLISINSITIDQPLYVTLSQARIDIFG---AFVSPSVVIAVLM 178 Query: 185 LALAIYLAHYTRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALAGVLFSFYM 244 LALAIY+AHYTRFGRAVYA+GGNEQSALLMGL VGRTKV +YAFSGFCAAL+GVLFSFYM Sbjct: 179 LALAIYIAHYTRFGRAVYAIGGNEQSALLMGLAVGRTKVMVYAFSGFCAALSGVLFSFYM 238 Query: 245 LSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWW 304 LSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILG+IQTLIAFDGTLSSWW Sbjct: 239 LSGYGLHAQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGLIQTLIAFDGTLSSWW 298 Query: 305 TKIVIGVLLFVFCLAQRLMSLGAAKAADANAGGGSVKPAAQA 346 TKIVIGVLLFVFC+AQRLMSLGA AG GS PA A Sbjct: 299 TKIVIGVLLFVFCMAQRLMSLGA-------AGSGSATPAMPA 333 >ref|YP_003774461.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62553.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 264/333 (79%), Positives = 291/333 (87%), Gaps = 6/333 (1%) Query: 15 PYFTSLVTVALLVVLFAMGSVAYDGFFSVQVVLNLLIDNAFLLVIGIGMTFVILSGGIDL 74 P+FTS+VTV LLVV+ G++ YDGF S QV+LNLLIDNAFLLV+ IGMTFVILSGGIDL Sbjct: 14 PWFTSMVTVVLLVVMLVAGALGYDGFLSPQVMLNLLIDNAFLLVVAIGMTFVILSGGIDL 73 Query: 75 SVGSVLALTTMISAYMLQSWHWHPLLVIVCVLALGGLFGAAMGVLIHFFKLQPFIVTLAG 134 SVGSVLALTTM++A++LQ+WHWHPLLVIV VL +G FGAAMG +IH+FKLQ FIVTLAG Sbjct: 74 SVGSVLALTTMVAAFLLQNWHWHPLLVIVTVLLMGAGFGAAMGAMIHYFKLQAFIVTLAG 133 Query: 135 MFLARGLCYLISINSITIDDPLFVAMSQTRLEFGLGDAFVSPSVVIAVLMLALAIYLAHY 194 MFLARGLCYLISINSITIDDPLF +SQTRLE L F+SPSVVIA+ MLALAI++AH Sbjct: 134 MFLARGLCYLISINSITIDDPLFTTLSQTRLE--LAGLFISPSVVIALFMLALAIWMAHC 191 Query: 195 TRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALAGVLFSFYMLSGYGLHAQG 254 TRFGRAVYA+GGNE SALLMGLPVGRTKV +YAFSG CAA+AGVLFSFYMLSGYGLHAQG Sbjct: 192 TRFGRAVYAIGGNENSALLMGLPVGRTKVLVYAFSGLCAAVAGVLFSFYMLSGYGLHAQG 251 Query: 255 TELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIVIGVLLF 314 ELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKI IG LLF Sbjct: 252 VELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIFIGALLF 311 Query: 315 VFCLAQRLMSLGAAKAADANAGGGSVKPAAQAA 347 VFC+AQR++SLGA + A GS K A A Sbjct: 312 VFCVAQRVISLGALRGKPA----GSAKAAPAGA 340 >ref|YP_004153448.1| inner-membrane translocator [Variovorax paradoxus EPS] gb|ADU35337.1| inner-membrane translocator [Variovorax paradoxus EPS] Length = 343 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/318 (66%), Positives = 256/318 (80%), Gaps = 1/318 (0%) Query: 12 LATPYFTSLVTVALLVVLFAMGSVAYDGFFSVQVVLNLLIDNAFLLVIGIGMTFVILSGG 71 L Y T++L V++ +GSV YDGFFS QV LNLLIDNAFL+V+ +GMTFVILSGG Sbjct: 26 LNPKYLPLTATISLFVLMATLGSVFYDGFFSAQVFLNLLIDNAFLIVVAVGMTFVILSGG 85 Query: 72 IDLSVGSVLALTTMISAYMLQSWHWHPLLVIVCVLALGGLFGAAMGVLIHFFKLQPFIVT 131 IDLSVGSV+ALTTM+SA +++ W P +VI VLA+G FGA MG+LI F+LQPFIVT Sbjct: 86 IDLSVGSVIALTTMVSASLVEKHGWSPAIVIPLVLAMGTAFGAFMGLLIERFRLQPFIVT 145 Query: 132 LAGMFLARGLCYLISINSITIDDPLFVAMSQTRLEFGLGDAFVSPSVVIAVLMLALAIYL 191 LAGMFLARGLCYLISI+SI+I + + +SQ R+ G+A VS S VIA+++L A+++ Sbjct: 146 LAGMFLARGLCYLISIDSISITNEFYSEVSQIRIPI-WGEASVSISAVIAIVVLLAAVFI 204 Query: 192 AHYTRFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALAGVLFSFYMLSGYGLH 251 AH T FGRAVYA+GG+E SA+LMGLPV RT V +Y SGFC+ALAGV+F+FYMLSGYGLH Sbjct: 205 AHCTPFGRAVYAIGGSEHSAMLMGLPVRRTLVGVYTLSGFCSALAGVIFTFYMLSGYGLH 264 Query: 252 AQGTELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIVIGV 311 A G ELDAIAAVVIGGTLLTGG GYVAGTL GVL+LG+IQTLI+FDGTLSSWWT+IV+G Sbjct: 265 ALGLELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIVVGA 324 Query: 312 LLFVFCLAQRLMSLGAAK 329 LLFVFCL QR + A + Sbjct: 325 LLFVFCLLQRFFTSRAPR 342 >ref|YP_002942967.1| ABC transporter permease [Variovorax paradoxus S110] gb|ACS17701.1| inner-membrane translocator [Variovorax paradoxus S110] Length = 342 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 210/314 (66%), Positives = 254/314 (80%), Gaps = 1/314 (0%) Query: 16 YFTSLVTVALLVVLFAMGSVAYDGFFSVQVVLNLLIDNAFLLVIGIGMTFVILSGGIDLS 75 Y T++L V++ +GSV YDGFFS QV LNLLIDNAFL+V+ +GMTFVILSGGIDLS Sbjct: 29 YLPLAATISLFVLVATLGSVFYDGFFSAQVFLNLLIDNAFLIVVAVGMTFVILSGGIDLS 88 Query: 76 VGSVLALTTMISAYMLQSWHWHPLLVIVCVLALGGLFGAAMGVLIHFFKLQPFIVTLAGM 135 VGSV+ALTTM+SA +++ W P +VI VLA+G FGA MG+LI F+LQPFIVTLAGM Sbjct: 89 VGSVIALTTMVSASLVEKHGWSPAVVIPLVLAMGTAFGAFMGLLIERFRLQPFIVTLAGM 148 Query: 136 FLARGLCYLISINSITIDDPLFVAMSQTRLEFGLGDAFVSPSVVIAVLMLALAIYLAHYT 195 FLARGLCYLISI+SI+I + + +SQ R+ G+A +S S VIA+ +L A+++AH T Sbjct: 149 FLARGLCYLISIDSISITNAFYAEVSQIRIPV-WGEASLSISAVIAIGVLLAAVFIAHCT 207 Query: 196 RFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALAGVLFSFYMLSGYGLHAQGT 255 FGRAVYA+GG+EQSALLMGLPV T + +Y SGFC+ALAGV+F+FYMLSGYGLHA G Sbjct: 208 PFGRAVYAIGGSEQSALLMGLPVRSTIIGVYTLSGFCSALAGVIFTFYMLSGYGLHALGL 267 Query: 256 ELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIVIGVLLFV 315 ELDAIAAVVIGGTLLTGG GYVAGTL GVL+LG+IQTLI+FDGTLSSWWT+IV+G LLFV Sbjct: 268 ELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIVVGALLFV 327 Query: 316 FCLAQRLMSLGAAK 329 FCL QR + A + Sbjct: 328 FCLLQRFFTSRAPR 341 >ref|ZP_01466751.1| putative sugar uptake ABC transporter permease protein [Stigmatella aurantiaca DW4/3-1] ref|YP_003951547.1| monosaccharide-transporting ATPase [Stigmatella aurantiaca DW4/3-1] gb|EAU62469.1| putative sugar uptake ABC transporter permease protein [Stigmatella aurantiaca DW4/3-1] gb|ADO69720.1| Monosaccharide-transporting ATPase [Stigmatella aurantiaca DW4/3-1] Length = 347 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/321 (64%), Positives = 246/321 (76%), Gaps = 1/321 (0%) Query: 16 YFTSLVTVALLVVLFAMGSVAYDGFFSVQVVLNLLIDNAFLLVIGIGMTFVILSGGIDLS 75 Y VT+ L V +F GS A+DGFFS+QV LNL IDN+FL+V IGMTFVI+SGGIDLS Sbjct: 28 YLPLTVTLGLFVAMFGAGSFAFDGFFSLQVFLNLFIDNSFLVVTAIGMTFVIISGGIDLS 87 Query: 76 VGSVLALTTMISAYMLQSWHWHPLLVIVCVLALGGLFGAAMGVLIHFFKLQPFIVTLAGM 135 VGSV+ALTTM+ A ++++ W P L + VL +G + G+ G +IH+F +QPFIVTLAGM Sbjct: 88 VGSVIALTTMVLAALVENQGWSPALAVPLVLVMGAVIGSIQGFVIHYFAIQPFIVTLAGM 147 Query: 136 FLARGLCYLISINSITIDDPLFVAMSQTRLEFGLGDAFVSPSVVIAVLMLALAIYLAHYT 195 FLARGLCYLISINSI I F +S R D+ +S +VVIA+ +LA AIYLAHYT Sbjct: 148 FLARGLCYLISINSIAITHTFFTEVSALRFPLPF-DSSISINVVIALAVLAGAIYLAHYT 206 Query: 196 RFGRAVYAVGGNEQSALLMGLPVGRTKVAIYAFSGFCAALAGVLFSFYMLSGYGLHAQGT 255 RFGR +YA+GGNEQSALLMGLPV RTK+ Y FSG C+ALAGV F+FYMLSGYGLHAQG Sbjct: 207 RFGRTIYAMGGNEQSALLMGLPVARTKILTYTFSGLCSALAGVSFTFYMLSGYGLHAQGM 266 Query: 256 ELDAIAAVVIGGTLLTGGYGYVAGTLTGVLILGVIQTLIAFDGTLSSWWTKIVIGVLLFV 315 E+DAIAA VIGGTLLTGG GYVAGTL GVLI G IQTLI F+G+LSSWWTKIVIG+LL V Sbjct: 267 EMDAIAAAVIGGTLLTGGSGYVAGTLVGVLIYGTIQTLIMFEGSLSSWWTKIVIGLLLLV 326 Query: 316 FCLAQRLMSLGAAKAADANAG 336 FCL Q++ + A AG Sbjct: 327 FCLFQKVFEKITHRRGQARAG 347