BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0081.p (357 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751958.1| sugar ABC transporter periplasmic sugar-bind... 633 e-179 ref|YP_003774462.1| sugar ABC transporter periplasmic protein [H... 628 e-178 ref|YP_002942962.1| sugar ABC transporter periplasmic sugar-bind... 578 e-163 ref|YP_001792223.1| sugar ABC transporter periplasmic sugar-bind... 576 e-162 ref|YP_004153443.1| sugar ABC transporter periplasmic sugar-bind... 576 e-162 >ref|YP_004751958.1| sugar ABC transporter periplasmic sugar-binding protein [Collimonas fungivorans Ter331] gb|AEK61135.1| sugar ABC transporter, periplasmic sugar-binding protein [Collimonas fungivorans Ter331] Length = 354 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 309/346 (89%), Positives = 326/346 (94%) Query: 12 LGLSMGLMAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQTDLQYAEDD 71 +GL +G + +Q AQ KG IGISMPTKSSARWIADG+NMVKVFKEKGY+TDLQYAEDD Sbjct: 9 VGLLIGAFGLVSQAGAQEKGPIGISMPTKSSARWIADGDNMVKVFKEKGYKTDLQYAEDD 68 Query: 72 IPNQLAQIENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIRNSKNVDYYA 131 IPNQLAQIENMVTKGVKVLVIAAIDGTTLS+ LQKAADKGIKVIAYDRLIR SKNVDYYA Sbjct: 69 IPNQLAQIENMVTKGVKVLVIAAIDGTTLSNALQKAADKGIKVIAYDRLIRGSKNVDYYA 128 Query: 132 TFDNYQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMSVLKPYIDKG 191 TFDN+QVGVLQASYIEK L LK GKGPFNIELFGGSADDNNAFFFYNGAMSVL+PYIDKG Sbjct: 129 TFDNFQVGVLQASYIEKTLGLKEGKGPFNIELFGGSADDNNAFFFYNGAMSVLQPYIDKG 188 Query: 192 KLVVRSKQMGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGISIGIISSLK 251 KLVVRSKQ GMDKV+TLRWDGA AQARMDNLLSAYYGNAHVDAVLSPYDGISIGI+SSLK Sbjct: 189 KLVVRSKQTGMDKVSTLRWDGAVAQARMDNLLSAYYGNAHVDAVLSPYDGISIGILSSLK 248 Query: 252 GVGYGTPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMVDAVLSGKAP 311 GVGYGTPK PMP+VTGQDAEVPSVKSI+RGEQR TVFKDTRELAKVTV MVDA+LSGKAP Sbjct: 249 GVGYGTPKQPMPIVTGQDAEVPSVKSIVRGEQRQTVFKDTRELAKVTVGMVDAMLSGKAP 308 Query: 312 TINDTKTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 INDTKTYNNGVKV+PSYLLKPVSVDVSNWK+VLVGSGYYTEAQ+K Sbjct: 309 AINDTKTYNNGVKVVPSYLLKPVSVDVSNWKQVLVGSGYYTEAQIK 354 >ref|YP_003774462.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62554.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 357 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/357 (85%), Positives = 332/357 (92%) Query: 1 MKLKSVLAGLTLGLSMGLMAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKG 60 MK+KSVL+G+ LGL + LM++SAQVSAQ+K L+G++MPTKSSARWIADGNNMVKV KEKG Sbjct: 1 MKIKSVLSGIALGLGVTLMSISAQVSAQSKQLVGVAMPTKSSARWIADGNNMVKVLKEKG 60 Query: 61 YQTDLQYAEDDIPNQLAQIENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRL 120 YQTDLQYAEDDIPNQL+QIENM+TKG KVLVIAAIDGTTL+DVLQKAADKG+KVIAYDRL Sbjct: 61 YQTDLQYAEDDIPNQLSQIENMLTKGAKVLVIAAIDGTTLTDVLQKAADKGVKVIAYDRL 120 Query: 121 IRNSKNVDYYATFDNYQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGA 180 IR SKNVDYYATFDN+QVGVLQA +EKAL LK GKGPFNIELFGGS+DDNNAFFFYNGA Sbjct: 121 IRGSKNVDYYATFDNFQVGVLQAQSLEKALGLKEGKGPFNIELFGGSSDDNNAFFFYNGA 180 Query: 181 MSVLKPYIDKGKLVVRSKQMGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYD 240 MSVLKPYID GKLVVRSKQMGMDKVATLRWD ATAQARMDNLLSAYY NA V+AVLSPYD Sbjct: 181 MSVLKPYIDSGKLVVRSKQMGMDKVATLRWDPATAQARMDNLLSAYYTNAKVNAVLSPYD 240 Query: 241 GISIGIISSLKGVGYGTPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVS 300 G+SIGI+SSL+GVGYGTP+ P P V+GQDAEVPSVKSIIRGEQ ST+FKDTRELAKVTV Sbjct: 241 GLSIGILSSLRGVGYGTPQQPFPYVSGQDAEVPSVKSIIRGEQYSTIFKDTRELAKVTVG 300 Query: 301 MVDAVLSGKAPTINDTKTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 MVDAVL GK P INDTKTYNNGVKV+PSYLLKPV VD SNWKEVLVGSGYYTEAQ+K Sbjct: 301 MVDAVLGGKQPQINDTKTYNNGVKVVPSYLLKPVVVDKSNWKEVLVGSGYYTEAQLK 357 >ref|YP_002942962.1| sugar ABC transporter periplasmic sugar-binding protein [Variovorax paradoxus S110] gb|ACS17696.1| sugar ABC transporter, periplasmic sugar-binding protein [Variovorax paradoxus S110] Length = 356 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 286/355 (80%), Positives = 311/355 (87%), Gaps = 4/355 (1%) Query: 3 LKSVLAGLTLGLSMGLMAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQ 62 LK+ LAG+ L ++ ++ AQ KG I ISMPTKSSARWIADG NMVK FKEKGY+ Sbjct: 6 LKASLAGIALAIA----GIAPLAHAQDKGPIAISMPTKSSARWIADGANMVKYFKEKGYK 61 Query: 63 TDLQYAEDDIPNQLAQIENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIR 122 TDLQYA+DDIPNQLAQIENMVTKG KVLVIAAIDGTTLSDVLQKAADKG+KVIAYDRLI+ Sbjct: 62 TDLQYADDDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDRLIK 121 Query: 123 NSKNVDYYATFDNYQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMS 182 SKNVDYYATFDN+QVGVLQA IE AL LK GKGPFNIELFGGS DDNNAFFFYNGAMS Sbjct: 122 GSKNVDYYATFDNFQVGVLQAQSIESALGLKSGKGPFNIELFGGSPDDNNAFFFYNGAMS 181 Query: 183 VLKPYIDKGKLVVRSKQMGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGI 242 VL+PYI GKLVVRSKQMGMDKV TLRWDGA AQARMDNLLSAYY VDAVLSPYDG+ Sbjct: 182 VLEPYIKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYSKDRVDAVLSPYDGL 241 Query: 243 SIGIISSLKGVGYGTPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMV 302 SIGI+SSLKGVGYG+ PMPVV+GQDAE+PSVKSI+R EQ STVFKDTRELAKVTV+MV Sbjct: 242 SIGILSSLKGVGYGSASQPMPVVSGQDAEIPSVKSILRKEQTSTVFKDTRELAKVTVAMV 301 Query: 303 DAVLSGKAPTINDTKTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 DA+LSGK P +NDTKTYNNG+KV+PSYLLKPVSVD NWK+VLV SGYY E+QVK Sbjct: 302 DAMLSGKTPEVNDTKTYNNGIKVVPSYLLKPVSVDGGNWKQVLVDSGYYKESQVK 356 >ref|YP_001792223.1| sugar ABC transporter periplasmic sugar-binding protein [Leptothrix cholodnii SP-6] gb|ACB35458.1| sugar ABC transporter, periplasmic sugar-binding protein [Leptothrix cholodnii SP-6] Length = 354 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 282/344 (81%), Positives = 309/344 (89%) Query: 14 LSMGLMAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQTDLQYAEDDIP 73 +++GL+ ++ Q SAQ KG IGISMPTKSSARWIADG+NMVKV K++GY+ DLQYA+DDIP Sbjct: 11 VALGLVGLATQASAQDKGAIGISMPTKSSARWIADGDNMVKVLKDRGYKADLQYADDDIP 70 Query: 74 NQLAQIENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIRNSKNVDYYATF 133 NQLAQ+ENMVTKGVKVLVIA+IDGTTLS VLQ AADKGIKVIAYDRLI+ SKNVDYYATF Sbjct: 71 NQLAQVENMVTKGVKVLVIASIDGTTLSKVLQNAADKGIKVIAYDRLIKGSKNVDYYATF 130 Query: 134 DNYQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMSVLKPYIDKGKL 193 DN+QVGVLQA I L LK GKGPFNIELFGGS DDNNAFFFY+GAMSVLKPYID GKL Sbjct: 131 DNFQVGVLQAGSIVDKLGLKAGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPYIDSGKL 190 Query: 194 VVRSKQMGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGISIGIISSLKGV 253 VVRSKQMGMDKV TLRWDGA AQARMDNLLSAYYG VDAVLSPYDG+SIGI+SSLKGV Sbjct: 191 VVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYGKDKVDAVLSPYDGLSIGILSSLKGV 250 Query: 254 GYGTPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMVDAVLSGKAPTI 313 GY T K P PVV+GQDAEV SVKS+++GEQ STVFKDTRELAKVT +MVDA+LSGK P I Sbjct: 251 GYCTAKQPCPVVSGQDAEVQSVKSMLKGEQYSTVFKDTRELAKVTANMVDAMLSGKTPEI 310 Query: 314 NDTKTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 NDTKTYNNGVKV+PSYLLKPVSVDVSNWK VL+GSGYY E+QVK Sbjct: 311 NDTKTYNNGVKVVPSYLLKPVSVDVSNWKPVLIGSGYYKESQVK 354 >ref|YP_004153443.1| sugar ABC transporter periplasmic sugar-binding protein [Variovorax paradoxus EPS] gb|ADU35332.1| sugar ABC transporter, periplasmic sugar-binding protein [Variovorax paradoxus EPS] Length = 356 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 286/355 (80%), Positives = 311/355 (87%), Gaps = 4/355 (1%) Query: 3 LKSVLAGLTLGLSMGLMAVSAQVSAQTKGLIGISMPTKSSARWIADGNNMVKVFKEKGYQ 62 LK+ LAGL + ++ + +AQ KGLI ISMPTKSSARWIADG NMVK FKEKGY+ Sbjct: 6 LKASLAGL----AFAVVGFTPLANAQDKGLIAISMPTKSSARWIADGANMVKYFKEKGYK 61 Query: 63 TDLQYAEDDIPNQLAQIENMVTKGVKVLVIAAIDGTTLSDVLQKAADKGIKVIAYDRLIR 122 TDLQYA+DDIPNQLAQIENMVTKG KVLVIAAIDGTTLSDVLQKAADKG+KVIAYDRLI+ Sbjct: 62 TDLQYADDDIPNQLAQIENMVTKGSKVLVIAAIDGTTLSDVLQKAADKGVKVIAYDRLIK 121 Query: 123 NSKNVDYYATFDNYQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMS 182 SKNVDYYATFDN+QVGVLQA IE AL LK GKGPFNIELFGGS DDNNAFFFYNGAMS Sbjct: 122 GSKNVDYYATFDNFQVGVLQAQSIEAALGLKSGKGPFNIELFGGSPDDNNAFFFYNGAMS 181 Query: 183 VLKPYIDKGKLVVRSKQMGMDKVATLRWDGATAQARMDNLLSAYYGNAHVDAVLSPYDGI 242 VL+PYI GKLVVRSKQMGMDKV TLRWDGA AQARMDNLLSAYY VDAVLSPYDG+ Sbjct: 182 VLEPYIKSGKLVVRSKQMGMDKVGTLRWDGAVAQARMDNLLSAYYTKDRVDAVLSPYDGL 241 Query: 243 SIGIISSLKGVGYGTPKLPMPVVTGQDAEVPSVKSIIRGEQRSTVFKDTRELAKVTVSMV 302 SIGI+SSLKGVGYG+ MP+V+GQDAEVPSVKSI+R EQ STVFKDTRELAKVTV+M Sbjct: 242 SIGILSSLKGVGYGSGTQAMPIVSGQDAEVPSVKSILRKEQTSTVFKDTRELAKVTVAMA 301 Query: 303 DAVLSGKAPTINDTKTYNNGVKVIPSYLLKPVSVDVSNWKEVLVGSGYYTEAQVK 357 DA+LSGK P +NDTKTYNNG+KV+PSYLLKPVSVD SNWK+VLV SGYY E+QVK Sbjct: 302 DAMLSGKTPEVNDTKTYNNGIKVVPSYLLKPVSVDASNWKQVLVDSGYYKESQVK 356