BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0077.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751960.1| l-arabinose transport system permease [Colli... 372 e-101 ref|YP_003774464.1| sugar ABC transporter permease [Herbaspirill... 361 4e-98 ref|YP_673405.1| inner-membrane translocator [Mesorhizobium sp. ... 326 1e-87 ref|YP_001834122.1| monosaccharide-transporting ATPase [Beijerin... 323 2e-86 ref|YP_001792221.1| monosaccharide-transporting ATPase [Leptothr... 319 2e-85 >ref|YP_004751960.1| l-arabinose transport system permease [Collimonas fungivorans Ter331] gb|AEK61137.1| L-arabinose transport system permease protein [Collimonas fungivorans Ter331] Length = 405 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/233 (84%), Positives = 214/233 (91%), Gaps = 3/233 (1%) Query: 1 LLSSGFIPEFFADTDTGSVRLTSLLVGIAAAAILLAVKVHGRSKQVKHGMEEEPAVFFLL 60 +LSSGFIP+ F+ D +R+TSLLVG+A AAI++ VKV R+KQ KHGME+EP VFF+L Sbjct: 176 MLSSGFIPDLFSAAD---LRITSLLVGVAVAAIMIFVKVRARTKQTKHGMEDEPYVFFIL 232 Query: 61 KNILFAAGIIAFSYLMASYKGMPNVLIIMFALMVIYTFVTNRTTIGRRVYAVGGNEKAAK 120 KN +FAA II FSYL+ASYKGMPNVLIIMF LMV+YTFV NRTTIGRR+YAVGGNEKAAK Sbjct: 233 KNAVFAAVIIFFSYLLASYKGMPNVLIIMFLLMVVYTFVANRTTIGRRIYAVGGNEKAAK 292 Query: 121 LSGIKTERVSFYTFVNMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASG 180 LSGIKT RVSFYTF+NMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASG Sbjct: 293 LSGIKTSRVSFYTFINMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASG 352 Query: 181 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVFFDVYNKNK 233 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVF DVYNKNK Sbjct: 353 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVFVDVYNKNK 405 >ref|YP_003774464.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62556.1| ABC-type sugar transport system, permease protein [Herbaspirillum seropedicae SmR1] Length = 405 Score = 361 bits (927), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 191/233 (81%), Positives = 213/233 (91%), Gaps = 3/233 (1%) Query: 1 LLSSGFIPEFFADTDTGSVRLTSLLVGIAAAAILLAVKVHGRSKQVKHGMEEEPAVFFLL 60 +LSSGFIPE +T + R TSL+VG+ AA +L+ VK+HGR KQ KHGME+EP +FFLL Sbjct: 176 MLSSGFIPELTGNT---TFRTTSLIVGVIAAVVLILVKLHGRRKQTKHGMEDEPVLFFLL 232 Query: 61 KNILFAAGIIAFSYLMASYKGMPNVLIIMFALMVIYTFVTNRTTIGRRVYAVGGNEKAAK 120 KN +FAA IIAFSYL+++Y+GMPNVLIIMFALMV+YTF+T+RTT+GRRVYAVGGNEKAAK Sbjct: 233 KNGVFAAAIIAFSYLLSTYRGMPNVLIIMFALMVLYTFITSRTTLGRRVYAVGGNEKAAK 292 Query: 121 LSGIKTERVSFYTFVNMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASG 180 LSGIKTERVSF+TFVNMG+LAALAGLIFAARLNTATPKAG GFELDVIAACFIGGASASG Sbjct: 293 LSGIKTERVSFFTFVNMGVLAALAGLIFAARLNTATPKAGLGFELDVIAACFIGGASASG 352 Query: 181 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVFFDVYNKNK 233 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQ+IKG VLL AV FDVYNKNK Sbjct: 353 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQMIKGFVLLMAVCFDVYNKNK 405 >ref|YP_673405.1| inner-membrane translocator [Mesorhizobium sp. BNC1] gb|ABG62240.1| multiple monosaccharide ABC transporter membrane protein [Chelativorans sp. BNC1] Length = 410 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 164/233 (70%), Positives = 192/233 (82%), Gaps = 3/233 (1%) Query: 1 LLSSGFIPEFFADTDTGSVRLTSLLVGIAAAAILLAVKVHGRSKQVKHGMEEEPAVFFLL 60 LLS+GFIP+ F G +T++L+G AA L+ + + R + K+GME+EP FFL Sbjct: 179 LLSTGFIPDLFG---VGRPNVTAILLGAITAAALVFMAMRNRQRHTKYGMEDEPFAFFLA 235 Query: 61 KNILFAAGIIAFSYLMASYKGMPNVLIIMFALMVIYTFVTNRTTIGRRVYAVGGNEKAAK 120 KN L AA I+ SYL+++Y+G PNVLI M L VIYTF+TN TT+GRR+YA+GGNEKAAK Sbjct: 236 KNGLIAAAIVFLSYLLSTYRGFPNVLITMAVLTVIYTFLTNSTTVGRRIYALGGNEKAAK 295 Query: 121 LSGIKTERVSFYTFVNMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASG 180 LSGI+TER++F TF NMGMLAALAGLIFAARLNTATPKAG GFELDVIAA FIGGAS SG Sbjct: 296 LSGIRTERLTFLTFANMGMLAALAGLIFAARLNTATPKAGVGFELDVIAAVFIGGASMSG 355 Query: 181 GVGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVFFDVYNKNK 233 GVGK+ GAV+GAF+MGVMNNGMSI+GIGIDYQQVIKGLVLLAAV FDVYNKNK Sbjct: 356 GVGKITGAVVGAFIMGVMNNGMSILGIGIDYQQVIKGLVLLAAVIFDVYNKNK 408 >ref|YP_001834122.1| monosaccharide-transporting ATPase [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96633.1| Monosaccharide-transporting ATPase [Beijerinckia indica subsp. indica ATCC 9039] Length = 396 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 159/232 (68%), Positives = 196/232 (84%), Gaps = 2/232 (0%) Query: 2 LSSGFIPEFFADTDTGSVRLTSLLVGIAAAAILLAVKVHGRSKQVKHGMEEEPAVFFLLK 61 LSSGFIPE F TDTG++ TSLL+G A A +L+ R++Q+ H + EP FF+ K Sbjct: 167 LSSGFIPEVF--TDTGTLYPTSLLMGAAVALVLVYTNYKNRARQLSHDINVEPNGFFIFK 224 Query: 62 NILFAAGIIAFSYLMASYKGMPNVLIIMFALMVIYTFVTNRTTIGRRVYAVGGNEKAAKL 121 N++ A ++ F+YL+AS++G+PNVL+IM AL+ +Y F+T+RTTIGR++YA+GGNEKAAKL Sbjct: 225 NLVLFAVVLYFTYLIASHRGLPNVLVIMMALIALYGFLTSRTTIGRQIYAIGGNEKAAKL 284 Query: 122 SGIKTERVSFYTFVNMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASGG 181 SGIKTER++F TFVNMG+L+ALAGL+FAARLNTATPKAG GFELDVIAACFIGGASA GG Sbjct: 285 SGIKTERLTFLTFVNMGVLSALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASAYGG 344 Query: 182 VGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVFFDVYNKNK 233 VG+V GAVIGA +MGVMNNGMSI+GIGIDYQQVIKGLVLL AV FDVYN+ + Sbjct: 345 VGRVTGAVIGALIMGVMNNGMSILGIGIDYQQVIKGLVLLGAVCFDVYNQKR 396 >ref|YP_001792221.1| monosaccharide-transporting ATPase [Leptothrix cholodnii SP-6] gb|ACB35456.1| Monosaccharide-transporting ATPase [Leptothrix cholodnii SP-6] Length = 414 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/232 (76%), Positives = 201/232 (86%), Gaps = 3/232 (1%) Query: 2 LSSGFIPEFFADTDTGSVRLTSLLVGIAAAAILLAVKVHGRSKQVKHGMEEEPAVFFLLK 61 LSSGFIP+ F+ T S+RLTSLL+G A A L + R Q+KHG+E EPA FF K Sbjct: 184 LSSGFIPDLFS---TESLRLTSLLIGAAVAGALALASLRSRGNQIKHGIEAEPAGFFFAK 240 Query: 62 NILFAAGIIAFSYLMASYKGMPNVLIIMFALMVIYTFVTNRTTIGRRVYAVGGNEKAAKL 121 +FAA +I FSY++ASYKG+PNVLI+M L+ ++ FVT+RTTIGRRVYA+GGNEKAAKL Sbjct: 241 IGVFAAMLIYFSYMLASYKGLPNVLIVMALLIGLFDFVTSRTTIGRRVYALGGNEKAAKL 300 Query: 122 SGIKTERVSFYTFVNMGMLAALAGLIFAARLNTATPKAGTGFELDVIAACFIGGASASGG 181 SGIKTER+SFYTFVNMG+LAALAGL+FAARLNTATPKAG GFELDVIAACFIGGASASGG Sbjct: 301 SGIKTERLSFYTFVNMGVLAALAGLVFAARLNTATPKAGLGFELDVIAACFIGGASASGG 360 Query: 182 VGKVMGAVIGAFVMGVMNNGMSIMGIGIDYQQVIKGLVLLAAVFFDVYNKNK 233 VGKVMGAVIGAF+MGVMNNGMSI+GIGIDYQQVIKGLVLLAAVF DVYNKNK Sbjct: 361 VGKVMGAVIGAFIMGVMNNGMSILGIGIDYQQVIKGLVLLAAVFVDVYNKNK 412