BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0072.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774467.1| LysR family transcription regulator protein ... 396 e-108 ref|YP_004751965.1| LysR family transcriptional regulator [Colli... 384 e-105 ref|YP_982890.1| LysR family transcriptional regulator [Polaromo... 331 7e-89 ref|YP_521740.1| LysR family transcriptional regulator [Rhodofer... 289 2e-76 ref|YP_004153440.1| LysR family transcriptional regulator [Vario... 270 2e-70 >ref|YP_003774467.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62559.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/246 (76%), Positives = 216/246 (87%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 MRPTIYGEAMIRH+RMALTSLSKAHEDIVALKSGLSGQVDVG ILSP ++L+P AIARVK Sbjct: 68 MRPTIYGEAMIRHARMALTSLSKAHEDIVALKSGLSGQVDVGGILSPAMALLPPAIARVK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 E +PMLRIGVEVESSNILL+RLL G+LDF++ RILD+E L YEEL+DEPICAVARVG Sbjct: 128 EQAPMLRIGVEVESSNILLSRLLHGELDFIIGRILDDEARGGLLYEELADEPICAVARVG 187 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HP H +++L D+ WIMAPKGSILR+R D MFR+ GL PP+NVVDTTAIL ITSLL Sbjct: 188 HPFHARTDLSLADLASEAWIMAPKGSILRARCDQMFREQGLAPPSNVVDTTAILFITSLL 247 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDF+YAMPTEVARYY+QARLMD+LPIELPC+M GFGIITR++ LLSPGA ++ QAIR+ Sbjct: 248 QQTDFIYAMPTEVARYYTQARLMDILPIELPCRMAGFGIITRQDNLLSPGANLVLQAIRE 307 Query: 241 VAKTIY 246 VAK IY Sbjct: 308 VAKMIY 313 >ref|YP_004751965.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61142.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 313 Score = 384 bits (987), Expect = e-105, Method: Compositional matrix adjust. Identities = 187/246 (76%), Positives = 208/246 (84%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 MRPTIYGEAMIRHSRMALTSLS AH+DI ALKSGLSGQV+VG ILSPG+ L+P AIAR+K Sbjct: 68 MRPTIYGEAMIRHSRMALTSLSHAHDDITALKSGLSGQVNVGAILSPGMVLLPPAIARLK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 + +PMLRIGVEVESSNILL RL RG LDFLVARILD+E + NL YEELSDEP+CAVARV Sbjct: 128 QQAPMLRIGVEVESSNILLERLQRGSLDFLVARILDQEDNRNLEYEELSDEPVCAVARVD 187 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL N+ LKDI D WI+ PKGSILR RVD+MF K GL PPANVVDTTAIL I SLL Sbjct: 188 HPLRNVSNLQLKDIADAGWILPPKGSILRHRVDMMFHKDGLAPPANVVDTTAILVIGSLL 247 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDFL+ MP EVAR+Y+Q ++ +LPIELPCKMDGFGIITRR Q+LSPGA ILQQ IR+ Sbjct: 248 QQTDFLHVMPAEVARFYAQVNVLAILPIELPCKMDGFGIITRRLQILSPGAKILQQTIRE 307 Query: 241 VAKTIY 246 VA IY Sbjct: 308 VATQIY 313 >ref|YP_982890.1| LysR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gb|ABM37969.1| transcriptional regulator, LysR family [Polaromonas naphthalenivorans CJ2] Length = 320 Score = 331 bits (848), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 159/246 (64%), Positives = 197/246 (80%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 ++PT YGE MIRH+RMA+TSL++AH+DI ALKSGLSGQVDVGVI++P + L+P+AIA+VK Sbjct: 68 VQPTSYGETMIRHARMAITSLTQAHDDISALKSGLSGQVDVGVIMTPAMMLMPSAIAQVK 127 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 SP+LRIGV++E+SN+LL RL G LDFL+ARIL++E LHYEEL EP+CAVARVG Sbjct: 128 SASPLLRIGVQLENSNVLLERLKNGMLDFLIARILEQEDKAKLHYEELVGEPVCAVARVG 187 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL + L+D+ WI++P+GSILR R D+MFR+ GL PP NVVDTTA+L ITSLL Sbjct: 188 HPLQSAAQLGLRDLAPLSWILSPQGSILRHRFDMMFRREGLEPPTNVVDTTALLVITSLL 247 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDFL+ MP +VAR Y + + +LPI LPC+MD FGIITRR QLLSPGATIL QAIR Sbjct: 248 QQTDFLHVMPLDVARDYQRFGQLKILPILLPCEMDAFGIITRRHQLLSPGATILLQAIRQ 307 Query: 241 VAKTIY 246 A +Y Sbjct: 308 TAVRVY 313 >ref|YP_521740.1| LysR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD68209.1| transcriptional regulator, LysR family [Rhodoferax ferrireducens T118] Length = 328 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 147/246 (59%), Positives = 186/246 (75%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 +RPT+YGE MIRH RMALT+LS+ + I L++GLSGQVD+GVI++P +LVP AIAR K Sbjct: 83 VRPTLYGETMIRHVRMALTNLSQGQDSIATLQAGLSGQVDIGVIITPSTTLVPQAIARTK 142 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 + +P L IGVEV +SN L+ RL RG LDFL+ARI ++E +L YE+LS+E CAVARVG Sbjct: 143 QEAPRLCIGVEVGTSNELVERLKRGQLDFLIARIREQEDDLDLLYEDLSEETECAVARVG 202 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL ++ L D+ WI++P+GSILR R D+MFR+ L PANVV+ TAI ITSLL Sbjct: 203 HPLLARSDLGLNDLAAAGWILSPRGSILRHRFDMMFRRIELETPANVVEATAISVITSLL 262 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQTDFL+ MP EVARYY + + +LPIELPCKMD FG+I RR+QLLSPGA +L Q +R Sbjct: 263 QQTDFLHVMPLEVARYYVRCSELAILPIELPCKMDSFGVIARRDQLLSPGAKLLLQHLRT 322 Query: 241 VAKTIY 246 +A IY Sbjct: 323 IAAEIY 328 >ref|YP_004153440.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU35329.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 319 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 124/246 (50%), Positives = 179/246 (72%) Query: 1 MRPTIYGEAMIRHSRMALTSLSKAHEDIVALKSGLSGQVDVGVILSPGLSLVPAAIARVK 60 MRPT YGE MIRH+R+AL SL++AH+++ ALK+G GQV VG I SPGL+L+P A+A VK Sbjct: 67 MRPTWYGETMIRHARVALASLNQAHDELTALKAGRFGQVSVGAITSPGLALLPPAVAMVK 126 Query: 61 EHSPMLRIGVEVESSNILLARLLRGDLDFLVARILDEEVSHNLHYEELSDEPICAVARVG 120 P LR+ +E+E+S +L+ RL +G LD LVAR+ E L YE LS+EP+CA+ R G Sbjct: 127 REQPDLRVSLEIETSPVLIERLEQGKLDMLVARLFAEHDKSQLRYEALSEEPVCALVRPG 186 Query: 121 HPLHEHKNMTLKDIVDHPWIMAPKGSILRSRVDLMFRKSGLTPPANVVDTTAILTITSLL 180 HPL +TL+D+V WI+ P GS+LR R +LMF++ GL PP N ++++A+L IT +L Sbjct: 187 HPLLGESGLTLRDVVGAGWIVPPAGSVLRHRFELMFQEEGLAPPTNTIESSALLFITRML 246 Query: 181 QQTDFLYAMPTEVARYYSQARLMDLLPIELPCKMDGFGIITRREQLLSPGATILQQAIRD 240 QQ+D L + T+VARYY+ ++ LLP+++PC MD FGIITR ++LLSP A ++ +A++ Sbjct: 247 QQSDMLAVLATDVARYYAAHGIVSLLPLDMPCHMDQFGIITRTDRLLSPAARVMMKALKT 306 Query: 241 VAKTIY 246 + ++Y Sbjct: 307 ASMSVY 312