BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0070.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751966.1| putative porin signal peptide protein [Colli... 472 e-131 ref|YP_004752017.1| putative porin signal peptide protein [Colli... 469 e-130 ref|YP_003774468.1| outer membrane porin [Herbaspirillum seroped... 455 e-126 ref|YP_002982532.1| porin [Ralstonia pickettii 12D] >gi|24086619... 407 e-111 ref|YP_001900554.1| porin [Ralstonia pickettii 12J] >gi|18772695... 406 e-111 >ref|YP_004751966.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61143.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 357 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 243/367 (66%), Positives = 280/367 (76%), Gaps = 23/367 (6%) Query: 12 KALGTASLFG-ACLAS--AQAEDSVTIYGRVVAGIDVQSNV--HQVNGN----TGTQVRA 62 K ASL G +AS AQA+ +VTIYGRV AGID QS V NGN TG++ Sbjct: 5 KTFAAASLLGLVAVASGQAQAQTNVTIYGRVDAGIDFQSGVALKDANGNQTGATGSKFGT 64 Query: 63 ASNQWGTSMIGFKGKEDLGGGLNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSAGSI 122 + NQWGTSM GFKG EDLGGGL +FFLLESGF A TG+TNG LFNRRSYVGL+GSAGSI Sbjct: 65 SGNQWGTSMFGFKGTEDLGGGLGAFFLLESGFNAPTGQTNGSALFNRRSYVGLSGSAGSI 124 Query: 123 KIGKNLFIDNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLG 182 K GKNLFI NDVW+LDPTGQQ+IGTANLVKGRNW GA+N+IEYQTPTW GFNAT QTSLG Sbjct: 125 KFGKNLFIVNDVWYLDPTGQQFIGTANLVKGRNWPGANNVIEYQTPTWSGFNATVQTSLG 184 Query: 183 EKAGSTTKGRKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSK 242 E+AGST GR DGVSLVY N GLELRAIYD++RD NGKY D++ SK Sbjct: 185 EQAGSTRNGRSDGVSLVYTNAGLELRAIYDVIRDVNGKY-------------SDIYAASK 231 Query: 243 ELILGGTYTIDKLKMYVGYENLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVN 302 +LI+GGTYTI+ LK++ YEN+ APD AG+PD + HYW+GANY ++PALTLIG FH Sbjct: 232 DLIVGGTYTINALKLFAAYENVSAPDSVAGSPDKIQHYWIGANYVLTPALTLIGGAFHAK 291 Query: 303 VNNNGGSANLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGY 362 +NN+GGS NL+M+GANYNLSKRTLLY GTVRNKGNA FS+E PLAG QNGGY Sbjct: 292 LNNDGGSGNLFMLGANYNLSKRTLLYASVGTVRNKGNADFSVEM-SGDNPLAGHSQNGGY 350 Query: 363 VGIAHSF 369 +G++HSF Sbjct: 351 LGVSHSF 357 >ref|YP_004752017.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] gb|AEK61194.1| putative porin signal peptide protein [Collimonas fungivorans Ter331] Length = 343 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 237/358 (66%), Positives = 274/358 (76%), Gaps = 23/358 (6%) Query: 19 LFGACLASAQAEDSVTIYGRVVAGIDVQSNVH------QVNGNTGTQVRAASNQWGTSMI 72 L GA + AQA+ SVTIYGRV AGID QS+V + G TG ++ A+ NQWGTSMI Sbjct: 2 LIGAACSQAQAQTSVTIYGRVDAGIDYQSSVALKDANGKPTGQTGGKLAASGNQWGTSMI 61 Query: 73 GFKGKEDLGGGLNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSAGSIKIGKNLFIDN 132 GFKG EDLGGGL +FFLLESGF AT G TNG LFNRRSYVGLNG AGSIK GKNLFI N Sbjct: 62 GFKGTEDLGGGLGAFFLLESGFDATKGVTNGSALFNRRSYVGLNGGAGSIKFGKNLFIVN 121 Query: 133 DVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTKGR 192 DVW+LDPTGQQ++GTA+LVKGRNW GA+N+IEYQTPTW GFNAT QTSLGE+AGS GR Sbjct: 122 DVWYLDPTGQQFMGTASLVKGRNWPGANNVIEYQTPTWSGFNATAQTSLGEQAGSAKNGR 181 Query: 193 KDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGGTYTI 252 DG+SLVY N GLELR IYD++RD NG+Y D++ SK+LI+GGTYTI Sbjct: 182 SDGISLVYTNGGLELRGIYDVIRDTNGRY-------------TDIYTASKDLIVGGTYTI 228 Query: 253 DKLKMYVGYENLKAPDVAAGT-PDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGGSAN 311 DKLK+Y GYEN+ APD AA + PD +NHYW+GANY ++PALTLIG FH +N++ GSA+ Sbjct: 229 DKLKLYAGYENISAPDTAAPSDPDKLNHYWIGANYMLTPALTLIGGAFHAKINHDAGSAS 288 Query: 312 LYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 369 L+MVGANYNLSKRTLLY GTVRNKGNA F E D PL G QNGGY GI+H+F Sbjct: 289 LFMVGANYNLSKRTLLYAAVGTVRNKGNADFGTEFDS---PLPGHAQNGGYAGISHTF 343 >ref|YP_003774468.1| outer membrane porin [Herbaspirillum seropedicae SmR1] gb|ADJ62560.1| outer membrane (porin) protein [Herbaspirillum seropedicae SmR1] Length = 355 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 247/368 (67%), Positives = 285/368 (77%), Gaps = 31/368 (8%) Query: 20 FGACLASAQAE-DSVTIYGRVVAGIDVQSNVHQVNGN--TGTQVRAASNQWGTSMIGFKG 76 GA A AQA+ SVTIYGRVVAG+D+ +NV + +G+ TGT++RAASNQWGTSMIG KG Sbjct: 1 MGAFSAQAQAQTSSVTIYGRVVAGVDIMTNVPKTDGSGTTGTRIRAASNQWGTSMIGVKG 60 Query: 77 KEDLGGGLNSFFLLESGFGATTGKTNGPE-----LFNRRSYVGLNGS-AGSIKIGKNLFI 130 EDLGGG N+FFLLESGFG+TTG NG + LFNRRSYVGL+ + AGS+K+GKNLFI Sbjct: 61 TEDLGGGTNAFFLLESGFGSTTGGLNGTDINGTSLFNRRSYVGLSSANAGSLKLGKNLFI 120 Query: 131 DNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTK 190 +NDVWFLDPTGQQWIGTANLV+GRNW GASN+IEY TPT+GGF AT QTSLGE AGS +K Sbjct: 121 NNDVWFLDPTGQQWIGTANLVRGRNWPGASNVIEYTTPTFGGFGATVQTSLGEAAGSFSK 180 Query: 191 G-------RKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKE 243 G RKDG+SLVYQN GLELR IYD++RDANG+Y DV+DTSKE Sbjct: 181 GGTSTKYGRKDGLSLVYQNNGLELRGIYDVIRDANGRYT-------------DVYDTSKE 227 Query: 244 LILGGTYTIDKLKMYVGYENLKAPDV--AAGTPDTVNHYWVGANYQISPALTLIGSVFHV 301 LILGGTY IDKLKM++GYENL+APD A+G PD VNHYW+GANY ++P L+GSVFHV Sbjct: 228 LILGGTYKIDKLKMFLGYENLRAPDANTASGVPDRVNHYWLGANYDVTPQFQLVGSVFHV 287 Query: 302 NVNNNGGSANLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGG 361 N NN GSANL+M G NY LSKRTLLYVG GT+RN NA +SLEAD + G Q GG Sbjct: 288 NANNGNGSANLFMAGVNYFLSKRTLLYVGGGTMRNGNNANYSLEADSSTGGGKGTNQTGG 347 Query: 362 YVGIAHSF 369 Y GIAHSF Sbjct: 348 YFGIAHSF 355 >ref|YP_002982532.1| porin [Ralstonia pickettii 12D] gb|ACS63860.1| porin Gram-negative type [Ralstonia pickettii 12D] Length = 358 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 211/359 (58%), Positives = 249/359 (69%), Gaps = 16/359 (4%) Query: 13 ALGTASLFGACLASAQAEDSVTIYGRVVAGIDVQSNVHQVNGNTGTQV-RAASNQWGTSM 71 ALG A A A+ SVT+YGRV +GID Q+NV G + RAA NQWGTSM Sbjct: 14 ALGLTFALAGWTAPALAQTSVTLYGRVASGIDYQNNVAPTATAPGGSLWRAADNQWGTSM 73 Query: 72 IGFKGKEDLGGGLNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLFI 130 GF GKEDLGGGL + F LESGFGA GKTNG LFNRRSYVGL+ G++ GKNLFI Sbjct: 74 FGFMGKEDLGGGLQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLFI 133 Query: 131 DNDVWFLDPTGQQWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTK 190 NDVWFLDPTGQQ+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T Sbjct: 134 SNDVWFLDPTGQQFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFTN 193 Query: 191 GRKDGVSLVYQNQGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGGTY 250 R+DGVS VY LE+RAIYD++RD NGK+ D+F+ SKE GGTY Sbjct: 194 SRRDGVSAVYSAGPLEVRAIYDVIRDGNGKFS-------------DIFNFSKEATFGGTY 240 Query: 251 TIDKLKMYVGYENLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGGSA 310 TI K K++ YENL APD AAG P NHYW+G NY+++PALTLIG+ + VNVN+ GG+A Sbjct: 241 TIGKAKLFAVYENLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNA 300 Query: 311 NLYMVGANYNLSKRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 369 NL+M GANYNLSKRT+LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 301 NLFMAGANYNLSKRTMLYASVGTVQNSATANFSVEATNNNPA-PGKNQLGAYTGIVHSF 358 >ref|YP_001900554.1| porin [Ralstonia pickettii 12J] gb|ACD28122.1| porin Gram-negative type [Ralstonia pickettii 12J] Length = 354 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 208/347 (59%), Positives = 248/347 (71%), Gaps = 16/347 (4%) Query: 25 ASAQAEDSVTIYGRVVAGIDVQSNVHQVNGNTGTQV-RAASNQWGTSMIGFKGKEDLGGG 83 A A A+ SVT+YGRV +GID Q+NV + G + RAA NQWGTSM GF GKEDLGGG Sbjct: 22 APALAQTSVTLYGRVASGIDYQNNVAPTATSPGGSLWRAADNQWGTSMFGFMGKEDLGGG 81 Query: 84 LNSFFLLESGFGATTGKTNGPELFNRRSYVGLNGSA-GSIKIGKNLFIDNDVWFLDPTGQ 142 L + F LESGFGA GKTNG LFNRRSYVGL+ G++ GKNLFI NDVWFLDPTGQ Sbjct: 82 LQAVFRLESGFGAAQGKTNGDALFNRRSYVGLSSPTWGTLTAGKNLFISNDVWFLDPTGQ 141 Query: 143 QWIGTANLVKGRNWGGASNIIEYQTPTWGGFNATFQTSLGEKAGSTTKGRKDGVSLVYQN 202 Q+IG+A LV+GRNW GA+NI+EYQ+PTWGGF QT LGE+ GS T R+DGVS VY Sbjct: 142 QFIGSATLVRGRNWPGANNIVEYQSPTWGGFQIGLQTGLGEQPGSFTNSRRDGVSAVYSA 201 Query: 203 QGLELRAIYDLVRDANGKYGSIKTNQDGTTTVGDVFDTSKELILGGTYTIDKLKMYVGYE 262 LE+RAIYD++RD NGK+ D+F+ SKE +GGTYTI K K++ YE Sbjct: 202 GPLEVRAIYDVIRDGNGKFS-------------DIFNFSKEATVGGTYTIGKAKLFAVYE 248 Query: 263 NLKAPDVAAGTPDTVNHYWVGANYQISPALTLIGSVFHVNVNNNGGSANLYMVGANYNLS 322 NL APD AAG P NHYW+G NY+++PALTLIG+ + VNVN+ GG+ANL+M GANYNLS Sbjct: 249 NLSAPDAAAGAPTKANHYWLGINYELTPALTLIGAAYRVNVNHGGGNANLFMAGANYNLS 308 Query: 323 KRTLLYVGAGTVRNKGNATFSLEADQAGPPLAGQGQNGGYVGIAHSF 369 KRT+LY GTV+N A FS+EA P G+ Q G Y GI HSF Sbjct: 309 KRTMLYASVGTVQNSATANFSVEATNNN-PAPGKNQLGAYTGIVHSF 354