BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0066.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum s... 479 e-133 ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacteriu... 473 e-131 ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungi... 472 e-131 ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas ar... 462 e-128 ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae ... 458 e-127 >ref|YP_003776964.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ65056.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 487 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/262 (90%), Positives = 245/262 (93%) Query: 16 VRFEDFGLSPDILKALTAQGYIHPTPIQEQAIPIVLQGRDVMGAAQTGTGKTAGFSLPII 75 VRFEDFGLSPDILKAL QGY+HPTPIQ QAIP+VLQGRDVMGAAQTGTGKTAGFSLPII Sbjct: 16 VRFEDFGLSPDILKALAEQGYVHPTPIQAQAIPVVLQGRDVMGAAQTGTGKTAGFSLPII 75 Query: 76 QLLLAHASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVFGGVDMAPQ 135 Q LL HAS S SPARHPVRALILTPTRELADQVADNV AY RFTPLRSTVVFGGVDMAPQ Sbjct: 76 QRLLQHASHSASPARHPVRALILTPTRELADQVADNVAAYCRFTPLRSTVVFGGVDMAPQ 135 Query: 136 TATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195 TA LRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP Sbjct: 136 TAILRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDLQRIINLLP 195 Query: 196 KQRQNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQIIYKVNEDAKGDAVAH 255 KQRQNL+FSATFSPEIKKLAASFQNNPVTIEVARSNATA+ VTQ IYKV E AK DAV+ Sbjct: 196 KQRQNLLFSATFSPEIKKLAASFQNNPVTIEVARSNATAENVTQTIYKVEEAAKADAVSF 255 Query: 256 IIRERQLKQVIVFSNTKIGAXK 277 IIR+R+LKQVIVFSNTKIGA + Sbjct: 256 IIRQRELKQVIVFSNTKIGASR 277 >ref|YP_001352218.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gb|ABR89617.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 513 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/276 (84%), Positives = 252/276 (91%) Query: 2 PEQLPETATPETPAVRFEDFGLSPDILKALTAQGYIHPTPIQEQAIPIVLQGRDVMGAAQ 61 P P A PAVRFEDFGL+P+IL+AL+ QGY+HPTPIQ +AIP+VLQG DVMGAAQ Sbjct: 22 PTTSPAAAVDAHPAVRFEDFGLAPEILRALSDQGYVHPTPIQAEAIPVVLQGIDVMGAAQ 81 Query: 62 TGTGKTAGFSLPIIQLLLAHASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTPL 121 TGTGKTAGFSLPIIQLL+AHA++S SPARHPVRALILTPTRELADQVADNVKAYSR TPL Sbjct: 82 TGTGKTAGFSLPIIQLLMAHANSSASPARHPVRALILTPTRELADQVADNVKAYSRHTPL 141 Query: 122 RSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDM 181 RS VVFGGVDMAPQTA LR+GVEIVIATPGRLLDH+QQKT+NLSQTQILVMDEADRMLDM Sbjct: 142 RSVVVFGGVDMAPQTAALRSGVEIVIATPGRLLDHIQQKTLNLSQTQILVMDEADRMLDM 201 Query: 182 GFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQII 241 GFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAA+F +PVTIEVARSNATA+ VTQI+ Sbjct: 202 GFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQIV 261 Query: 242 YKVNEDAKGDAVAHIIRERQLKQVIVFSNTKIGAXK 277 YKV E KGDAV++IIRER LKQVIVFSNTKIGA + Sbjct: 262 YKVEEGDKGDAVSYIIRERGLKQVIVFSNTKIGASR 297 >ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] Length = 506 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 232/275 (84%), Positives = 249/275 (90%) Query: 3 EQLPETATPETPAVRFEDFGLSPDILKALTAQGYIHPTPIQEQAIPIVLQGRDVMGAAQT 62 E + A P TP VRF DFGLSPDIL+AL QGY+HPTPIQ +AIP+VLQGRDVMGAAQT Sbjct: 15 EMQADPAVPTTPTVRFADFGLSPDILRALNDQGYVHPTPIQAEAIPVVLQGRDVMGAAQT 74 Query: 63 GTGKTAGFSLPIIQLLLAHASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTPLR 122 GTGKTAGFSLPIIQLLLAHA+TS SPARHPVRALILTPTRELADQVA+NVKAY R TPLR Sbjct: 75 GTGKTAGFSLPIIQLLLAHANTSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLR 134 Query: 123 STVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMG 182 STVVFGGVD+APQTA LR+G+EIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDMG Sbjct: 135 STVVFGGVDIAPQTAALRSGIEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMG 194 Query: 183 FLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQIIY 242 FLPDLQRIINLLPK+RQNLMFSATFS EIKKLAA+F NPVTIEVARSNATAD VTQ +Y Sbjct: 195 FLPDLQRIINLLPKERQNLMFSATFSGEIKKLAATFLKNPVTIEVARSNATADNVTQTMY 254 Query: 243 KVNEDAKGDAVAHIIRERQLKQVIVFSNTKIGAXK 277 VNE K +AV++IIRER LKQVIVFSNTKIGA K Sbjct: 255 HVNEQTKAEAVSYIIRERNLKQVIVFSNTKIGASK 289 >ref|YP_001098795.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] emb|CAL60666.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 502 Score = 462 bits (1188), Expect = e-128, Method: Compositional matrix adjust. Identities = 228/277 (82%), Positives = 249/277 (89%) Query: 1 MPEQLPETATPETPAVRFEDFGLSPDILKALTAQGYIHPTPIQEQAIPIVLQGRDVMGAA 60 +P + P PA+RF+DFGL+P+ILKAL QGY+HPTPIQ +AIP+VL+G DVMGAA Sbjct: 8 LPTETPIVIPDVAPAIRFQDFGLAPEILKALNDQGYVHPTPIQAEAIPVVLKGMDVMGAA 67 Query: 61 QTGTGKTAGFSLPIIQLLLAHASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTP 120 QTGTGKTAGFSLPIIQLL+AHA++S SPARHPVRALILTPTRELADQVA NVKAYSR TP Sbjct: 68 QTGTGKTAGFSLPIIQLLMAHANSSASPARHPVRALILTPTRELADQVAANVKAYSRHTP 127 Query: 121 LRSTVVFGGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLD 180 LRS VVFGG+DM PQTA LR GVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLD Sbjct: 128 LRSLVVFGGMDMTPQTAALRGGVEIVIATPGRLLDHVQQKTINLSQTQILVMDEADRMLD 187 Query: 181 MGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQI 240 MGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAA+F +PVTIEVARSNATA+ VTQI Sbjct: 188 MGFLPDLQRIINLLPKQRQNLMFSATFSPEIKKLAATFLKDPVTIEVARSNATAENVTQI 247 Query: 241 IYKVNEDAKGDAVAHIIRERQLKQVIVFSNTKIGAXK 277 IYKV E+AK DAV+ IIRER LKQVIVFSNTKIGA + Sbjct: 248 IYKVEEEAKRDAVSFIIRERGLKQVIVFSNTKIGASR 284 >ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 504 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 230/271 (84%), Positives = 250/271 (92%), Gaps = 2/271 (0%) Query: 9 ATPET-PAVRFEDFGLSPDILKALTAQGYIHPTPIQEQAIPIVLQGRDVMGAAQTGTGKT 67 A P++ PA+RFEDFGLS +IL+AL QGY HPTPIQ AIP+VLQGRDVMGAAQTGTGKT Sbjct: 8 AVPDSEPALRFEDFGLSAEILRALADQGYDHPTPIQAAAIPVVLQGRDVMGAAQTGTGKT 67 Query: 68 AGFSLPIIQLLLAHASTSMSPARHPVRALILTPTRELADQVADNVKAYSRFTPLRSTVVF 127 AGFSLPIIQLLLA+AS S SPARHPVRALILTPTRELADQVA+NVKAY R TPLRSTVVF Sbjct: 68 AGFSLPIIQLLLANASNSASPARHPVRALILTPTRELADQVAENVKAYCRHTPLRSTVVF 127 Query: 128 GGVDMAPQTATLRAGVEIVIATPGRLLDHVQQKTVNLSQTQILVMDEADRMLDMGFLPDL 187 GG+DMAPQTA LRAGVEIVIATPGRLLDHVQQKT+NLSQTQILVMDEADRMLDMGFLPDL Sbjct: 128 GGMDMAPQTAALRAGVEIVIATPGRLLDHVQQKTLNLSQTQILVMDEADRMLDMGFLPDL 187 Query: 188 QRIINLLPKQRQNLMFSATFSPEIKKLAASFQNNPVTIEVARSNATADRVTQIIYKVN-E 246 QRIINLLPK+RQNLMFSATFS EIKKLA+SF +NPVTIEVARSN TADRVTQ++YKV+ + Sbjct: 188 QRIINLLPKKRQNLMFSATFSGEIKKLASSFLDNPVTIEVARSNQTADRVTQVVYKVDSD 247 Query: 247 DAKGDAVAHIIRERQLKQVIVFSNTKIGAXK 277 DAK D VAH+IR RQLKQV+VFSNTKIGA + Sbjct: 248 DAKRDIVAHLIRGRQLKQVLVFSNTKIGASR 278