BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0063.p (310 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776962.1| transcription regulator protein [Herbaspiril... 493 e-137 ref|YP_004751693.1| putative transcriptional regulator [Collimon... 423 e-116 ref|YP_001352220.1| LysR family transcriptional regulator [Janth... 422 e-116 ref|YP_001098797.1| transcriptional regulator [Herminiimonas ars... 398 e-109 ref|YP_002981965.1| LysR family transcriptional regulator [Ralst... 320 2e-85 >ref|YP_003776962.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65054.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/307 (77%), Positives = 271/307 (88%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 MNLTLESL ILDMIDRKGSFAAAAV LDRVPSALTYSVRKLEDDLDVLLFDRRGHRA+LT Sbjct: 1 MNLTLESLLILDMIDRKGSFAAAAVALDRVPSALTYSVRKLEDDLDVLLFDRRGHRAQLT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 PAG +LL EGRHLL AA+DLEQRVKRTATGRETEL IVLNS+IPF MLP+IAAFDRE Sbjct: 61 PAGLQLLQEGRHLLLAANDLEQRVKRTATGRETELHIVLNSLIPFDKMLPIIAAFDREQS 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 GTRLRFTPGVL+G W+ ++ GRA+LVIG TLDGPE+VRTSGRFQ ++LG +DW+F VAP Sbjct: 121 GTRLRFTPGVLTGAWEKLIEGRANLVIGVTLDGPEVVRTSGRFQMQELGAVDWVFVVAPQ 180 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPLS ELVR HRA+AVGD+S++ P LTMGLL+GQETLTV TVA KLQAQLAGL Sbjct: 181 HPLAGVEEPLSAELVRSHRAIAVGDNSQSLPTLTMGLLSGQETLTVATVADKLQAQLAGL 240 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPEVQR 300 GCGHLPR WA PYLASGAL+EKQT +KP++NF++AWPKAEQGKSLKWF+QHL+ P V++ Sbjct: 241 GCGHLPRIWAEPYLASGALVEKQTLAAKPNDNFMVAWPKAEQGKSLKWFIQHLAQPHVRQ 300 Query: 301 ALLSGAP 307 +L+ P Sbjct: 301 SLIGPVP 307 >ref|YP_004751693.1| putative transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60870.1| putative transcriptional regulator with periplasmic binding protein domain (LysR family) [Collimonas fungivorans Ter331] Length = 317 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/309 (69%), Positives = 249/309 (80%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 MNLTLE+LQ+LD I RKGSFAAAAV LDRVPSALTYSVRKLE+DLDVLLFDRRGHRAKLT Sbjct: 1 MNLTLEALQVLDAIARKGSFAAAAVELDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 AG+ELLTEGRHLL AA +LE+RVKR ATG E ELRIVL+SIIPF ++LPLI AFDRE Sbjct: 61 SAGQELLTEGRHLLLAAQELERRVKRAATGWEVELRIVLDSIIPFDSLLPLIEAFDRENA 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 GTRLR + LSG W+ +L+ RADL IGA GP+ +R SG FQTRQLG I+W FAVAP Sbjct: 121 GTRLRISHETLSGVWEALLSDRADLAIGAPHGGPDSIRMSGGFQTRQLGMIEWAFAVAPG 180 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA+APEPL+ L++++RAVAVGD+ R+ PG+T GLL+GQ+ LTVP++AAKLQAQL GL Sbjct: 181 HPLANAPEPLTASLIQQYRAVAVGDTGRSLPGITSGLLSGQDILTVPSIAAKLQAQLRGL 240 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPEVQR 300 GCGHLPR+ AAPY ASGALIEKQT +KP + IAW GKSLKWF+ LS P VQ Sbjct: 241 GCGHLPRWLAAPYFASGALIEKQTIEAKPIDKTQIAWRTPVVGKSLKWFITQLSEPVVQH 300 Query: 301 ALLSGAPPH 309 LL PH Sbjct: 301 TLLGSPAPH 309 >ref|YP_001352220.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90685.1| transcriptional regulator, LysR family [Janthinobacterium sp. Marseille] Length = 305 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 213/304 (70%), Positives = 246/304 (80%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 MNLTLE+++ILD IDRKGSFAAAAV LDRVPSALTYSVRKLE+DLDVLLFDRRGHRAKLT Sbjct: 1 MNLTLEAIRILDTIDRKGSFAAAAVALDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 AG+ELLTEGRHLL AAD+LEQRVKRTA+G E ELRIVL+SIIPF MLPLI FD EG Sbjct: 61 AAGQELLTEGRHLLRAADELEQRVKRTASGWEVELRIVLDSIIPFEKMLPLIREFDAEGS 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 GT+LRF+ VLSG W+ + +G ADL IG + DGPEIVR SG F+ R LG +DW+FAVAP Sbjct: 121 GTQLRFSTEVLSGVWETLTSGAADLAIGVSSDGPEIVRGSGDFRVRPLGEVDWVFAVAPG 180 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA P+PL+P+LV+++RAVA GDS R P ++ GLL GQ TLTVP + KL+AQLAGL Sbjct: 181 HPLAGMPDPLAPQLVQQYRAVAAGDSGRFLPSVSAGLLTGQATLTVPDIHEKLKAQLAGL 240 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPEVQR 300 GCGHLPR WAAPYLASG LIEKQT +KP AW + +GK LKWFL L+ P+VQR Sbjct: 241 GCGHLPRKWAAPYLASGELIEKQTVETKPTGLPQYAWRSSSRGKCLKWFLNKLADPDVQR 300 Query: 301 ALLS 304 LL+ Sbjct: 301 ELLA 304 >ref|YP_001098797.1| transcriptional regulator [Herminiimonas arsenicoxydans] emb|CAL60668.1| putative LysR-family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/304 (67%), Positives = 237/304 (77%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 MNLTLE+++ILD IDRKGSF AAAV LDRVPSALTYSVRKLE+DLDVLLFDRRGHRAKLT Sbjct: 1 MNLTLEAIRILDTIDRKGSFGAAAVALDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 PAG+ELLTEGRHLL AA +LEQRVKRTATG E ELRIVL++IIPF MLPLI FD + Sbjct: 61 PAGQELLTEGRHLLRAAAELEQRVKRTATGWEVELRIVLDAIIPFEKMLPLIREFDLQDS 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 GTRLRF+ VLSGTW+ +++G ADL IG +GP+++R SG F+ + LG ++W+FAVA Sbjct: 121 GTRLRFSTEVLSGTWERLISGDADLAIGVAYEGPDLIRGSGGFRVKPLGNLEWVFAVALH 180 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPLS ++R+RAV GDS R P +T GLL GQ TLTVPTV KL AQLAGL Sbjct: 181 HPLATMEEPLSVTDIQRYRAVVTGDSGRMLPSITAGLLTGQATLTVPTVHDKLAAQLAGL 240 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPEVQR 300 GCG+LPR WAAPYLASGALIEKQT +KP AW +GK LKWFL L+ P VQ Sbjct: 241 GCGYLPRKWAAPYLASGALIEKQTSENKPAGIPQYAWRTDGRGKCLKWFLAKLADPAVQD 300 Query: 301 ALLS 304 LL+ Sbjct: 301 MLLA 304 >ref|YP_002981965.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS63293.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 300 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 171/303 (56%), Positives = 216/303 (71%), Gaps = 5/303 (1%) Query: 1 MNLTLESLQILDMIDRKGSFAAAAVVLDRVPSALTYSVRKLEDDLDVLLFDRRGHRAKLT 60 M L+LESL++LD I+RKGSFAAAA L +VPSALTY VRKLEDDLDVLLFDRR HRA+LT Sbjct: 1 MALSLESLEVLDAIERKGSFAAAAHELGKVPSALTYVVRKLEDDLDVLLFDRRRHRAELT 60 Query: 61 PAGRELLTEGRHLLAAADDLEQRVKRTATGRETELRIVLNSIIPFANMLPLIAAFDREGG 120 PAGR LL EGRHLL AADDL +RVKR ATG E L IV++ ++ F ++P+I F E Sbjct: 61 PAGRALLDEGRHLLQAADDLARRVKRLATGWEATLTIVVDDLVHFRALMPVIQDFYAENT 120 Query: 121 GTRLRFTPGVLSGTWDDMLAGRADLVIGATLDGPEIVRTSGRFQTRQLGTIDWIFAVAPD 180 TRLRF VL+GTWD +L+GRADL+IG ++++ G QTR +G I ++FAVA Sbjct: 121 ATRLRFCREVLAGTWDALLSGRADLLIGPA----QVMQVQG-IQTRTVGNIPFVFAVAAH 175 Query: 181 HPLADAPEPLSPELVRRHRAVAVGDSSRNHPGLTMGLLAGQETLTVPTVAAKLQAQLAGL 240 HPLA EPL + RHR VAVGD+SRN P T+G++AGQ+TL VP++A K+QAQ+ GL Sbjct: 176 HPLAQLEEPLPATAITRHRIVAVGDTSRNLPARTIGVMAGQDTLVVPSMADKVQAQIRGL 235 Query: 241 GCGHLPRYWAAPYLASGALIEKQTQMSKPHENFLIAWPKAEQGKSLKWFLQHLSLPEVQR 300 GCG LP A PYL SG LI K+T K F +AW +GK+L+W++ L P + + Sbjct: 236 GCGWLPVPLAQPYLDSGVLIAKETSEDKRAGTFQVAWRNNMRGKALQWWVDKLEDPRLGQ 295 Query: 301 ALL 303 AL+ Sbjct: 296 ALM 298