BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0058.p (331 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha 1,3-glucosy... 452 e-125 ref|YP_296763.1| glycosyl transferase family protein [Ralstonia ... 340 2e-91 ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha 1,3-glucosy... 340 2e-91 ref|YP_004751700.1| lipopolysaccharide 3-alpha-galactosyltransfe... 326 3e-87 ref|YP_002801568.1| lipopolysaccharide 1,3-galactosyltransferase... 233 4e-59 >ref|YP_003776956.1| UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein [Herbaspirillum seropedicae SmR1] gb|ADJ65048.1| UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/324 (63%), Positives = 258/324 (79%) Query: 8 TTRDDDSFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMKTMEQ 67 TT D ++HIAFCVDNHYFR+MGAM+AS+VANNP RRF FHVFAF+++ D ARRM+++E+ Sbjct: 15 TTAADAAWHIAFCVDNHYFRAMGAMLASMVANNPGRRFVFHVFAFAISDDNARRMRSIEE 74 Query: 68 NDKVRVVTHVIERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADMLCVG 127 N ++VV H++ + F EF MIAKSYYSLSTF+RLI+P LKD TDRVLY+DADMLCVG Sbjct: 75 NPNIKVVPHLVAQETFAEFGEMIAKSYYSLSTFTRLIVPATLKDQTDRVLYVDADMLCVG 134 Query: 128 NVDELAATDISDTIALVAPDVGWATKDGRDGRYSVLNLKNKQYFNAGVLYINIPKWEENK 187 +++EL D+ T ALV DVGW GRDGRYSVL LK+ +YFNAG+LYINIP+WE+NK Sbjct: 135 SLEELMGMDLDGTNALVVDDVGWEAPTGRDGRYSVLGLKHPRYFNAGMLYINIPEWEKNK 194 Query: 188 ISEQAIQTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLAMDSVG 247 +SE AI+ L+ + +KL FNDQDALNIVLDG+ARY+ +KWNYIYSMI DLK+G+ M VG Sbjct: 195 VSEAAIRALVSNPDKLTFNDQDALNIVLDGQARYIPVKWNYIYSMIADLKQGRQTMSPVG 254 Query: 248 DAVFIHFAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHSRSLFSR 307 DA IHFAGL+KPW DWSGH AREL+++YH LSAWSD+PLD APLN+KEMR+++R L R Sbjct: 255 DARIIHFAGLVKPWIDWSGHAARELYLRYHTLSAWSDLPLDAAPLNHKEMRVYARFLIKR 314 Query: 308 GKPLQGACWYLAHIAAVIRKKLKK 331 G G W + +R+KL++ Sbjct: 315 GDYACGLYWNARFLLTALRRKLRR 338 >ref|YP_296763.1| glycosyl transferase family protein [Ralstonia eutropha JMP134] gb|AAZ61919.1| Glycosyl transferase, family 8 [Ralstonia eutropha JMP134] Length = 331 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 161/308 (52%), Positives = 212/308 (68%), Gaps = 4/308 (1%) Query: 14 SFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMKTMEQNDKVRV 73 SFHIAFCVD++YFR+MGA IASI+ NNP + FTFHV FS + RR+K +E+ V Sbjct: 22 SFHIAFCVDDNYFRAMGATIASIIDNNPGQHFTFHVLTFSALEENQRRLKQLEEMYPVST 81 Query: 74 VTHVIERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADMLCVGNVDELA 133 H+++ A F +FS + S+YSLS F+RL+IP +L+ TDRVLYLDAD+LCV +DEL Sbjct: 82 QLHLLDLASFTQFSHFLGHSHYSLSIFTRLVIPEVLQGQTDRVLYLDADILCVNRLDELV 141 Query: 134 ATDISDTIALVAPDVGWATKDGRDGRYSVLNLKNKQYFNAGVLYINIPKWEENKISEQAI 193 DIS+ IA+V PD + R + L L + +YFN GVL+INI KW I+ Q + Sbjct: 142 DMDISNEIAVVVPDAPVTLRR----RVAALGLAHAEYFNGGVLFINIDKWLAENITPQTL 197 Query: 194 QTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLAMDSVGDAVFIH 253 + LL S + FNDQDALN VL+G+A+Y++ +WNY+Y +I DL + AM VG AVFIH Sbjct: 198 EALLDTSTDMRFNDQDALNKVLNGRAKYISPRWNYLYDLIHDLNVNRFAMRPVGKAVFIH 257 Query: 254 FAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHSRSLFSRGKPLQG 313 FAG +KPW DWSGH+AR LF KY LS W D+PLD P N KEMR+HSR +F + KP++ Sbjct: 258 FAGSVKPWADWSGHEARGLFRKYLALSPWRDMPLDPEPRNTKEMRMHSRFMFRQHKPVES 317 Query: 314 ACWYLAHI 321 WYL ++ Sbjct: 318 LKWYLRYL 325 >ref|YP_003776955.1| UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein [Herbaspirillum seropedicae SmR1] gb|ADJ65047.1| UDP-glucose:(glucosyl) LPS alpha 1,3-glucosyltransferase WaaO protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 159/309 (51%), Positives = 213/309 (68%), Gaps = 4/309 (1%) Query: 14 SFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMKTMEQNDKVRV 73 SFHIAFCVDN+YFR+MG IASIVANNP + FTFHV AF V+ D RR+K +E +V+ Sbjct: 19 SFHIAFCVDNNYFRAMGGTIASIVANNPDQHFTFHVLAFEVSEDHQRRLKQLEAMYRVKT 78 Query: 74 VTHVIERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADMLCVGNVDELA 133 H+++ F +FS + S+YSLS F+RL+IPT+L +VTDRVLYLDAD+LC +D L Sbjct: 79 ELHLLDLNDFTQFSHFLGHSHYSLSIFTRLVIPTVLAEVTDRVLYLDADILCFNRLDALV 138 Query: 134 ATDISDTIALVAPDVGWATKDGRDGRYSVLNLKNKQYFNAGVLYINIPKWEENKISEQAI 193 DIS IA+V PD + R + L L +K+YFN GV++INIPKW I+ + + Sbjct: 139 DMDISQDIAVVVPDAPVTLQ----RRVAALELAHKEYFNGGVIFINIPKWLAEDITPKTL 194 Query: 194 QTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLAMDSVGDAVFIH 253 LL + FNDQDALNIVL+G+ARYV+ KWNY+Y +I DL K A+ VG A+F+H Sbjct: 195 DALLNSKTDMRFNDQDALNIVLNGRARYVSPKWNYLYDLIHDLNVNKFALKPVGKAIFVH 254 Query: 254 FAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHSRSLFSRGKPLQG 313 FAG +KPW WS H+A LF +Y +S W+D+ LDQ P N KE+R+HSR ++ +G+PL+ Sbjct: 255 FAGAVKPWAAWSRHEACTLFRRYLDISPWADMALDQEPRNTKELRMHSRFMYRQGRPLES 314 Query: 314 ACWYLAHIA 322 WYL ++ Sbjct: 315 LKWYLRYLG 323 >ref|YP_004751700.1| lipopolysaccharide 3-alpha-galactosyltransferase [Collimonas fungivorans Ter331] gb|AEK60877.1| Lipopolysaccharide 3-alpha-galactosyltransferase [Collimonas fungivorans Ter331] Length = 321 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 153/320 (47%), Positives = 219/320 (68%), Gaps = 4/320 (1%) Query: 4 STTDTTRDDDSFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMK 63 S T DDSFHIAFCVD+HY RSMGA IASI+AN+P FTFHVFAF+++ D +R K Sbjct: 5 SPTSPATADDSFHIAFCVDDHYCRSMGATIASIIANSPGVTFTFHVFAFALSEDNRKRFK 64 Query: 64 TMEQNDKVRVVTHVIERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADM 123 +EQ +++ H+I+ F+ F+ + SYYS + F+RL+IP+ L+ + D+VLYLDAD+ Sbjct: 65 QLEQMYQLKTHVHIIDPEVFKPFAHISQFSYYSPTIFTRLLIPSTLRGMCDKVLYLDADI 124 Query: 124 LCVGNVDELAATDISDTIALVAPDVGWATKDGRDGRYSVLNLKNKQYFNAGVLYINIPKW 183 LCVG++ EL D D+ A+V PD T+ R + L L +++YFN+GV+Y+++ W Sbjct: 125 LCVGSMAELRDMDFGDSAAIVVPDADETTR----RRCAALQLSSQKYFNSGVMYMHVENW 180 Query: 184 EENKISEQAIQTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLAM 243 +I+E+ I +L + ++ F DQDALN+VL+GK RY+ KWN++Y +I DL++ K M Sbjct: 181 MTQEITEKTILAILENGKEYRFPDQDALNVVLEGKIRYIDRKWNFLYDLIHDLEKDKRQM 240 Query: 244 DSVGDAVFIHFAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHSRS 303 +G VFIHFAG +KPWNDW H + LF+KY LS W+D+ LD AP NYKEMR++SR Sbjct: 241 RDIGAVVFIHFAGAVKPWNDWCLHASTALFVKYQALSPWADLALDPAPRNYKEMRMYSRF 300 Query: 304 LFSRGKPLQGACWYLAHIAA 323 L RG+ L WY+ +++A Sbjct: 301 LMKRGQVLDSFRWYMKYLSA 320 >ref|YP_002801568.1| lipopolysaccharide 1,3-galactosyltransferase [Azotobacter vinelandii DJ] gb|ACO80593.1| Lipopolysaccharide 1,3-galactosyltransferase [Azotobacter vinelandii DJ] Length = 326 Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 125/319 (39%), Positives = 189/319 (59%), Gaps = 12/319 (3%) Query: 6 TDT-TRDDDSFHIAFCVDNHYFRSMGAMIASIVANNPVRRFTFHVFAFSVTADQARRMKT 64 +DT TR+ D HIAF VD +Y R MG I SI+ NNP FHVF S+++ R+ Sbjct: 2 SDTATRNSDVLHIAFGVDENYLRPMGITIVSIIENNPGLELVFHVFISSISSASRVRLDR 61 Query: 65 MEQNDKVRVVTHVI-ERAQFQEFSAMIAKSYYSLSTFSRLIIPTMLKDVTDRVLYLDADM 123 +E+ V H++ E ++ ++ +++ S + + RL+IP L+D TDRVLYLDAD+ Sbjct: 62 LERMFARPVNLHLVDEMLDVKDPASGKGQAHISKAAYIRLLIPEALRDFTDRVLYLDADI 121 Query: 124 LCVGNVDELAATDISDTIALVAPDVGWATKD-GRDGRYSVLNLKNKQYFNAGVLYINIPK 182 LCVG++ L DI A V D G +K G + L+ YFN+GVLYI+IP+ Sbjct: 122 LCVGDISGLLHLDIDGRTAAVIRDAGAESKRAGLVKKGQTLD----NYFNSGVLYIDIPR 177 Query: 183 WEENKISEQAIQTLLRDSEKLAFNDQDALNIVLDGKARYVAIKWNYIYSMIVDLKRGKLA 242 W E ++ +A++ + L ++DQDALN+VLDG R++ WN+ Y + LK+G++ Sbjct: 178 WIERAVTSRALEKIADPVLDLRYSDQDALNLVLDGDVRFIDKGWNHQYGLTGKLKKGRVG 237 Query: 243 MDSVGDAVFIHFAGLIKPWNDWSGHQARELFMKYHRLSAWSDVPLDQAPLNYKEMRIHS- 301 MD D F+HF G +KPW W+ HQ++ELF++Y LS W+ LD + +E+ ++S Sbjct: 238 MDVPSDTKFVHFIGPMKPWRSWNPHQSKELFLRYQALSPWAGEALDDN-FSPREIYVYSR 296 Query: 302 ---RSLFSRGKPLQGACWY 317 RS+F +G+ L G WY Sbjct: 297 FMYRSMFQQGRWLSGLIWY 315