BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0054.p (208 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_884350.1| branched chain amino-acid ABC transporter subst... 254 7e-66 ref|NP_888033.1| branched chain amino-acid ABC transporter subst... 254 8e-66 ref|YP_001756447.1| Leu/Ile/Val-binding family protein [Methylob... 181 5e-44 ref|YP_001768710.1| Leu/Ile/Val-binding family protein [Methylob... 176 2e-42 ref|YP_002501542.1| extracellular ligand-binding receptor [Methy... 176 2e-42 >ref|NP_884350.1| branched chain amino-acid ABC transporter substrate-binding protein [Bordetella parapertussis 12822] emb|CAE37392.1| Putative branched-chain amino acid transporter substrate binding protein [Bordetella parapertussis] Length = 400 Score = 254 bits (648), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 126/176 (71%), Positives = 145/176 (82%), Gaps = 5/176 (2%) Query: 28 CAFAGAQAAPGVFSGDVVKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVAGKKIEL 87 A AGAQ SGDVVKIGILNDQSGLYADLAG GSV+AA+MAIEE GG V GKKIEL Sbjct: 16 TAPAGAQV-----SGDVVKIGILNDQSGLYADLAGAGSVQAARMAIEEFGGQVLGKKIEL 70 Query: 88 VSGNHQNKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAMIAAASSDF 147 V +HQNKAD+GA IAR WFD++GVD IADFSNSSV FAVQGLA ER KI ++AA SSDF Sbjct: 71 VWADHQNKADIGAGIARAWFDREGVDAIADFSNSSVGFAVQGLANERKKITLVAAGSSDF 130 Query: 148 TGKSCTATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAFASDMKAAI 203 TGK+C+ S QWVYNSY+NGYGLA++L +G +S FLLTVDY FGHAFA+D++ A+ Sbjct: 131 TGKACSPFSTQWVYNSYSNGYGLARLLASRGMDSVFLLTVDYTFGHAFANDVRKAV 186 >ref|NP_888033.1| branched chain amino-acid ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE31985.1| Putative branched-chain amino acid transporter substrate binding protein [Bordetella bronchiseptica RB50] Length = 408 Score = 254 bits (648), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 126/176 (71%), Positives = 145/176 (82%), Gaps = 5/176 (2%) Query: 28 CAFAGAQAAPGVFSGDVVKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVAGKKIEL 87 A AGAQ SGDVVKIGILNDQSGLYADLAG GSV+AA+MAIEE GG V GKKIEL Sbjct: 24 TAPAGAQV-----SGDVVKIGILNDQSGLYADLAGAGSVQAARMAIEEFGGQVLGKKIEL 78 Query: 88 VSGNHQNKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAMIAAASSDF 147 V +HQNKAD+GA IAR WFD++GVD IADFSNSSV FAVQGLA ER KI ++AA SSDF Sbjct: 79 VWADHQNKADIGAGIARAWFDREGVDAIADFSNSSVGFAVQGLANERKKITLVAAGSSDF 138 Query: 148 TGKSCTATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAFASDMKAAI 203 TGK+C+ S QWVYNSY+NGYGLA++L +G +S FLLTVDY FGHAFA+D++ A+ Sbjct: 139 TGKACSPFSTQWVYNSYSNGYGLARLLASRGMDSVFLLTVDYTFGHAFANDVRKAV 194 >ref|YP_001756447.1| Leu/Ile/Val-binding family protein [Methylobacterium radiotolerans JCM 2831] gb|ACB25764.1| Leu/Ile/Val-binding protein family [Methylobacterium radiotolerans JCM 2831] Length = 409 Score = 181 bits (460), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 94/194 (48%), Positives = 124/194 (63%), Gaps = 7/194 (3%) Query: 19 RTGLAALLACAFAG------AQAAPGVFSGDVVKIGILNDQSGLYADLAGLGSVEAAKMA 72 RT A+LA A AG AA G FS + ++IGILNDQSGLYA+ G GSVEAA+MA Sbjct: 3 RTIGGAVLATALAGTALGSAPAAAQGSFSDNAIRIGILNDQSGLYAEYGGQGSVEAARMA 62 Query: 73 IEEMGGAVAGKKIELVSGNHQNKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAA 132 +E+MGG + IE+++ +HQNK D+ + IAR W+D+DGVD I + + SSVA AVQGL+ Sbjct: 63 VEDMGGKIGSVPIEILTADHQNKPDIASAIARQWYDRDGVDAIMELTTSSVALAVQGLSK 122 Query: 133 ERGKIAMIA-AASSDFTGKSCTATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAF 191 E+ KI + AA+SD TGK+CT W +++ G LT G N+WF LT DYAF Sbjct: 123 EKKKITITTGAATSDLTGKACTPYGYHWAFDTRALAVGTGGALTRAGGNTWFFLTADYAF 182 Query: 192 GHAFASDMKAAIKA 205 G A +D + A Sbjct: 183 GSALEADTSKVVIA 196 >ref|YP_001768710.1| Leu/Ile/Val-binding family protein [Methylobacterium sp. 4-46] gb|ACA16276.1| Leu/Ile/Val-binding protein family [Methylobacterium sp. 4-46] Length = 417 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 84/173 (48%), Positives = 115/173 (66%), Gaps = 1/173 (0%) Query: 34 QAAPGVFSGDVVKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVAGKKIELVSGNHQ 93 QA PG S VVKIGILNDQSG+YAD G GSVEAA+MA+E+ GG+V G +++V +HQ Sbjct: 34 QADPGRISDGVVKIGILNDQSGVYADFGGRGSVEAARMAVEDFGGSVLGAPVQIVDADHQ 93 Query: 94 NKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAMI-AAASSDFTGKSC 152 NK D+ + +AR W+D D VD I + + SSVA AVQGL+ E+ +I ++ AA++D TGK C Sbjct: 94 NKPDIASNVARQWYDTDKVDAIMELTTSSVALAVQGLSREKKRITIVDGAATTDLTGKQC 153 Query: 153 TATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGHAFASDMKAAIKA 205 T W Y+++ G L E G ++WF +T DYAFG A +D ++A Sbjct: 154 TPYGFHWAYDTHALAVGTGGSLVENGGDTWFFITADYAFGTALQADTTKFVEA 206 >ref|YP_002501542.1| extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] gb|ACL61239.1| Extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] Length = 402 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 85/173 (49%), Positives = 120/173 (69%), Gaps = 4/173 (2%) Query: 24 ALLACAFAGAQAAPGVFSGD--VVKIGILNDQSGLYADLAGLGSVEAAKMAIEEMGGAVA 81 A+L A AG PG+ S ++IG+LNDQSG YAD G+GSV AA+MA+E+ GG VA Sbjct: 5 AVLILALAGT-LLPGLASAQDKSIRIGVLNDQSGPYADFQGIGSVIAAQMAVEDYGGTVA 63 Query: 82 GKKIELVSGNHQNKADVGAVIARGWFDKDGVDMIADFSNSSVAFAVQGLAAERGKIAM-I 140 G+KI++VS +HQNK DVGA IAR W D+DGVD+I D NS+VA AV +A E+ K+ + Sbjct: 64 GRKIDVVSADHQNKTDVGANIARAWIDRDGVDLIVDVPNSAVALAVSNIAREKNKVLIGS 123 Query: 141 AAASSDFTGKSCTATSAQWVYNSYTNGYGLAKVLTEQGYNSWFLLTVDYAFGH 193 A S++ TG+ C+ + W Y++++ G+ +A + ++G +WF LT DYAFGH Sbjct: 124 GAGSAELTGRQCSPNTVHWTYDTWSLGHSIAHAVVQRGGKNWFFLTADYAFGH 176