BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0053.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_884350.1| branched chain amino-acid ABC transporter subst... 232 1e-59 ref|NP_888033.1| branched chain amino-acid ABC transporter subst... 232 1e-59 ref|NP_947538.1| putative ABC transporter perplasmic binding pro... 215 2e-54 ref|YP_931624.1| ABC transporter substrate-binding protein [Azoa... 214 2e-54 ref|YP_001525254.1| ABC transporter substrate-binding protein [A... 214 3e-54 >ref|NP_884350.1| branched chain amino-acid ABC transporter substrate-binding protein [Bordetella parapertussis 12822] emb|CAE37392.1| Putative branched-chain amino acid transporter substrate binding protein [Bordetella parapertussis] Length = 400 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/158 (66%), Positives = 130/158 (82%) Query: 1 VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60 +T QALAAPAVF+TD++ MGL+AAQGL+F+TAFYWDR +R WA++F R+KAMP+MT Sbjct: 242 ITPGQALAAPAVFITDVNSMGLQAAQGLQFVTAFYWDRTPDSRAWAEKFFARQKAMPSMT 301 Query: 61 QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120 QAGVYS+V HYLKAV+AA TD+A V KMRELPV DM +NG +REDGQ++HDM+LVEV Sbjct: 302 QAGVYSAVRHYLKAVEAAKTDDAVAVAAKMRELPVRDMNIENGRVREDGQVMHDMYLVEV 361 Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158 KKP ES+ WDYYKVL+T+P D+ F+ LA S CPLV K Sbjct: 362 KKPDESRRAWDYYKVLTTVPADQAFQALADSACPLVGK 399 >ref|NP_888033.1| branched chain amino-acid ABC transporter substrate-binding protein [Bordetella bronchiseptica RB50] emb|CAE31985.1| Putative branched-chain amino acid transporter substrate binding protein [Bordetella bronchiseptica RB50] Length = 408 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 105/158 (66%), Positives = 130/158 (82%) Query: 1 VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60 +T QALAAPAVF+TD++ MGL+AAQGL+F+TAFYWDR +R WA++F R+KAMP+MT Sbjct: 250 ITPGQALAAPAVFITDVNSMGLQAAQGLQFVTAFYWDRTPDSRAWAEKFFARQKAMPSMT 309 Query: 61 QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120 QAGVYS+V HYLKAV+AA TD+A V KMRELPV DM +NG +REDGQ++HDM+LVEV Sbjct: 310 QAGVYSAVRHYLKAVEAAKTDDAVAVAAKMRELPVRDMNIENGRVREDGQVMHDMYLVEV 369 Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158 KKP ES+ WDYYKVL+T+P D+ F+ LA S CPLV K Sbjct: 370 KKPDESRRAWDYYKVLTTVPADQAFQALADSACPLVGK 407 >ref|NP_947538.1| putative ABC transporter perplasmic binding protein [Rhodopseudomonas palustris CGA009] ref|YP_001991476.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] emb|CAE27634.1| putative ABC transporter, perplasmic binding protein, branched chain amino acids [Rhodopseudomonas palustris CGA009] gb|ACF01001.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 404 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 97/157 (61%), Positives = 116/157 (73%) Query: 1 VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60 VT Q LA +F++DIH +GLK A GL A+YWD N+RTR + K+F++R K MPTM Sbjct: 246 VTGGQKLAGIVMFISDIHSLGLKMANGLIITEAYYWDLNDRTRAFGKKFYERTKRMPTMN 305 Query: 61 QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120 QA YS+ LHYLKAVKAAN+ + V+ KMRELPV D F NG LREDG+MVH MFL EV Sbjct: 306 QAATYSATLHYLKAVKAANSKDTKTVLAKMRELPVRDAFTDNGFLREDGRMVHSMFLFEV 365 Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVK 157 KKP ESKAPWDYYKVL+ +PGD+ F+PL CPLVK Sbjct: 366 KKPEESKAPWDYYKVLAEVPGDQAFRPLKDGGCPLVK 402 >ref|YP_931624.1| ABC transporter substrate-binding protein [Azoarcus sp. BH72] emb|CAL92737.1| probable ABC transporter substrate binding protein [Azoarcus sp. BH72] Length = 404 Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 94/158 (59%), Positives = 121/158 (76%) Query: 1 VTANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKAMPTMT 60 +T Q LA +F++D+H +GLK AQG+ T FYWD N+ TR W+KRF ++K MPTM Sbjct: 247 ITPKQQLAGLLMFISDVHSLGLKNAQGMFLTTGFYWDLNDETRAWSKRFFDKQKRMPTMV 306 Query: 61 QAGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEV 120 QAG YSSV+HYLKAVKAA TD+ +VM +M++ P++D FA+NG +REDG+MVHDM+LV+V Sbjct: 307 QAGQYSSVMHYLKAVKAAGTDDTTKVMAQMKKTPINDFFAKNGQIREDGRMVHDMYLVQV 366 Query: 121 KKPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158 KKP ESK PWDYY V IPG + F+PL+ S CPLVKK Sbjct: 367 KKPEESKYPWDYYHVKQVIPGAEAFQPLSLSRCPLVKK 404 >ref|YP_001525254.1| ABC transporter substrate-binding protein [Azorhizobium caulinodans ORS 571] dbj|BAF88336.1| putative ABC transport protein substrate-binding component [Azorhizobium caulinodans ORS 571] Length = 407 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 95/157 (60%), Positives = 121/157 (77%), Gaps = 1/157 (0%) Query: 3 ANQALAAPAVFLTDIHGMGLKAAQGLRFITAFYWDRNERTREWAKRFHQRRKA-MPTMTQ 61 Q LAA +F+TDIH +GL+AAQG+ T FYWD +E+TR ++KRF R MPTM Sbjct: 251 GGQTLAALLLFITDIHSVGLEAAQGMVLTTGFYWDTDEKTRAFSKRFAARMNGKMPTMVH 310 Query: 62 AGVYSSVLHYLKAVKAANTDNAAEVMKKMRELPVDDMFAQNGHLREDGQMVHDMFLVEVK 121 AGVYSSVLHYLKA +AA TD+ +V+ KMRELP+DDMFA+NG +R DG+MVHDM+L +VK Sbjct: 311 AGVYSSVLHYLKAAEAAGTDDGEKVVAKMRELPIDDMFAKNGKIRADGRMVHDMYLAKVK 370 Query: 122 KPSESKAPWDYYKVLSTIPGDKIFKPLAQSDCPLVKK 158 P ESK WDYY+++ IPGD+ F+PL++S CPLVKK Sbjct: 371 SPKESKGAWDYYQIVRVIPGDEAFQPLSESTCPLVKK 407