BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0052.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_888027.1| hypothetical protein BB1482 [Bordetella bronchi...   231   3e-59
ref|NP_884344.1| hypothetical protein BPP2086 [Bordetella parape...   228   3e-58
ref|ZP_02187569.1| hypothetical protein BAL199_03764 [alpha prot...   200   5e-50
ref|YP_003981780.1| hypothetical protein AXYL_05766 [Achromobact...   144   5e-33
ref|NP_883037.1| hypothetical protein BPP0696 [Bordetella parape...   132   2e-29

>ref|NP_888027.1| hypothetical protein BB1482 [Bordetella bronchiseptica RB50]
 emb|CAE31979.1| Hypothetical protein BB1482 [Bordetella bronchiseptica RB50]
          Length = 152

 Score =  231 bits (589), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/150 (72%), Positives = 126/150 (84%), Gaps = 6/150 (4%)

Query: 4   AARKSDRK------DPPPQVRHVDEMEWETIRWPGETGKMLFHPSEENPTAPNAGLLRLA 57
           A++++D++      DPPP++ HVD+MEWETIRWPGETGKML HP+ E+PT PNAGLLRL 
Sbjct: 3   ASKQNDKQGTATTDDPPPRIMHVDDMEWETIRWPGETGKMLSHPTPEDPTLPNAGLLRLE 62

Query: 58  PGAHHPWHRHDFAQVWYILEGEFTIGGRVCTPGTMLCHGDPHCEEELHTEHGGMILIVQY 117
           PGA+HPWHRHDFAQVWYILEGEFTIGG  C PGT+L HGDPHCE ELHTE GG++ IVQY
Sbjct: 63  PGAYHPWHRHDFAQVWYILEGEFTIGGVKCGPGTVLQHGDPHCEPELHTESGGVMFIVQY 122

Query: 118 PGPTTGGRPIYDKRFNMDKRIEMALERTDV 147
           PGPTTGGR IYDKRFNMDKR  +  ER D+
Sbjct: 123 PGPTTGGRVIYDKRFNMDKRAAVEAERIDL 152


>ref|NP_884344.1| hypothetical protein BPP2086 [Bordetella parapertussis 12822]
 emb|CAE37386.1| Hypothetical protein BPP2086 [Bordetella parapertussis]
          Length = 152

 Score =  228 bits (581), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/150 (72%), Positives = 125/150 (83%), Gaps = 6/150 (4%)

Query: 4   AARKSDRK------DPPPQVRHVDEMEWETIRWPGETGKMLFHPSEENPTAPNAGLLRLA 57
           A++++D++      DPPP++ HVD+MEWETIRWPGETGKML HP+ E+ T PNAGLLRL 
Sbjct: 3   ASKQNDKQGTATTDDPPPRIMHVDDMEWETIRWPGETGKMLSHPTPEDLTLPNAGLLRLE 62

Query: 58  PGAHHPWHRHDFAQVWYILEGEFTIGGRVCTPGTMLCHGDPHCEEELHTEHGGMILIVQY 117
           PGA+HPWHRHDFAQVWYILEGEFTIGG  C PGT+L HGDPHCE ELHTE GG++ IVQY
Sbjct: 63  PGAYHPWHRHDFAQVWYILEGEFTIGGVKCGPGTVLQHGDPHCEPELHTESGGVMFIVQY 122

Query: 118 PGPTTGGRPIYDKRFNMDKRIEMALERTDV 147
           PGPTTGGR IYDKRFNMDKR  +  ER D+
Sbjct: 123 PGPTTGGRVIYDKRFNMDKRAAVEAERIDL 152


>ref|ZP_02187569.1| hypothetical protein BAL199_03764 [alpha proteobacterium BAL199]
 gb|EDP65911.1| hypothetical protein BAL199_03764 [alpha proteobacterium BAL199]
          Length = 148

 Score =  200 bits (509), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/134 (72%), Positives = 106/134 (79%)

Query: 14  PPQVRHVDEMEWETIRWPGETGKMLFHPSEENPTAPNAGLLRLAPGAHHPWHRHDFAQVW 73
           P + RH D++EWETIRWPGETGKMLFHP ++ PT PNAG+LRL PGAHHP HRHDFAQVW
Sbjct: 15  PFEARHRDDLEWETIRWPGETGKMLFHPRQDRPTEPNAGILRLEPGAHHPVHRHDFAQVW 74

Query: 74  YILEGEFTIGGRVCTPGTMLCHGDPHCEEELHTEHGGMILIVQYPGPTTGGRPIYDKRFN 133
           YILEGEF IG  V  PGTML H DPH E+E  TE GG ILIVQYPGPTTGGRPIYD RFN
Sbjct: 75  YILEGEFHIGSGVYGPGTMLFHPDPHFEDEFRTETGGEILIVQYPGPTTGGRPIYDDRFN 134

Query: 134 MDKRIEMALERTDV 147
              R  +  ERTD+
Sbjct: 135 KASRKPIEAERTDL 148


>ref|YP_003981780.1| hypothetical protein AXYL_05766 [Achromobacter xylosoxidans A8]
 gb|ADP19065.1| hypothetical protein AXYL_05766 [Achromobacter xylosoxidans A8]
          Length = 148

 Score =  144 bits (363), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 1/121 (0%)

Query: 15  PQVRHVDEMEWETIRWPGETGKMLFHPSEENPTAPNAGLLRLAPGAHHPWHRHDFAQVWY 74
           P+ R  ++MEWE  R+  +T K LFH   E PT PNAG LR  PGA    H+HDFAQVWY
Sbjct: 16  PEYRRPEDMEWEMGRFKNKT-KFLFHTRAERPTEPNAGFLRYEPGAGFRLHKHDFAQVWY 74

Query: 75  ILEGEFTIGGRVCTPGTMLCHGDPHCEEELHTEHGGMILIVQYPGPTTGGRPIYDKRFNM 134
           ++EGEF +GG++  PGT++ H DPH EE L TE GG +  VQY GPTTGGRP+YD R N+
Sbjct: 75  VIEGEFNMGGKMYGPGTVVFHPDPHIEEALSTETGGTLFFVQYQGPTTGGRPVYDGRMNI 134

Query: 135 D 135
            
Sbjct: 135 Q 135


>ref|NP_883037.1| hypothetical protein BPP0696 [Bordetella parapertussis 12822]
 ref|NP_887253.1| hypothetical protein BB0703 [Bordetella bronchiseptica RB50]
 emb|CAE40105.1| conserved hypothetical protein [Bordetella parapertussis]
 emb|CAE31203.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
          Length = 161

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 86/132 (65%)

Query: 14  PPQVRHVDEMEWETIRWPGETGKMLFHPSEENPTAPNAGLLRLAPGAHHPWHRHDFAQVW 73
           P +  H D++EWE +R+ G+  KM+FHP +++ T PNAG++R   G+ HP H H FAQ+W
Sbjct: 28  PMRAMHRDDIEWENLRYEGQFSKMMFHPVQDDRTIPNAGIVRYEKGSGHPLHNHYFAQIW 87

Query: 74  YILEGEFTIGGRVCTPGTMLCHGDPHCEEELHTEHGGMILIVQYPGPTTGGRPIYDKRFN 133
           Y+L G+F I G+V   G+M+ H DPH E  L+T   G IL VQY GPTT    IY+ RFN
Sbjct: 88  YVLSGKFEIEGKVYGEGSMMFHPDPHYEYALNTLEDGEILYVQYMGPTTRQPAIYEGRFN 147

Query: 134 MDKRIEMALERT 145
           M+ R  +  E T
Sbjct: 148 METRRPLEDEST 159