BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0051.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_05087871.1| transcriptional regulator, XRE family with cu... 108 4e-22 ref|ZP_02168287.1| transcriptional regulator, XRE family with cu... 105 4e-21 ref|YP_004753344.1| MerR family transcriptional regulator [Colli... 103 1e-20 ref|YP_845282.1| XRE family transcriptional regulator [Syntropho... 103 1e-20 ref|YP_509988.1| XRE family transcriptional regulator [Jannaschi... 102 5e-20 >ref|ZP_05087871.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gb|EEB69563.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 204 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 104/180 (57%), Gaps = 9/180 (5%) Query: 4 QIGSRIRECRRAKNITLQVLSDETALSTGFLSKLERGEASASIANLISISKYLGLSLQDL 63 ++G IR+ R+ N+TLQ L D + +S G+LS++ER A+ S+ L I+ L + L D Sbjct: 11 KVGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLAQIAAALEVGL-DY 69 Query: 64 FQTSTEAAPPPPDYVLSKAKARNDEAPLSAAGYTFHRSCGDLPGQQLAAFELEFPANQEN 123 F ++++ P L++A +R A L + + + PG +++++ L PA + Sbjct: 70 FISASK-----PSDGLTRAGSRPLFA-LDNSSLRYEALGAEFPGSEMSSYVLHIPAGYTS 123 Query: 124 QPVLVSHEGEEVLYMLDGKLEFHIGDDVLILERGDCLHFNCEKPHMGRNIGAKTARLMMV 183 + VSHEGEE++Y+LDG++E +GD + GDCLH+ + PH RN +TAR++ Sbjct: 124 E--TVSHEGEEIIYVLDGEIEQTLGDQTFRMTVGDCLHYRGDTPHAWRNPTDQTARILWT 181 >ref|ZP_02168287.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] gb|EDQ31845.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] Length = 203 Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 100/184 (54%), Gaps = 15/184 (8%) Query: 6 GSRIRECRRAKNITLQVLSDETALSTGFLSKLERGEASASIANLISISKYLGLSLQDLFQ 65 G RIRE R +TLQ L+D++ +S GFLS++ER +A+ S+ L S++ LG+ + D+F Sbjct: 23 GERIREMRHKAGLTLQTLADQSGISVGFLSQVERDKATPSLGTLASVAAALGVDV-DVFI 81 Query: 66 TSTEAAPPPPDYVLSKAKARNDEAP---LSAAGYTFHRSCGDLPGQQLAAFELEFPANQE 122 ++ P P D V R E P L+ + + R LPG L++ + P Sbjct: 82 ST----PKPADSV-----TREGERPSFVLADSSLQYERISTVLPGGTLSSLIVHIPVGYA 132 Query: 123 NQPVLVSHEGEEVLYMLDGKLEFHIGDDVLILERGDCLHFNCEKPHMGRNIGAKTARLMM 182 ++ + +H GEE++ +LDG + +GD +L GD LHF + PH N+G ARL+ Sbjct: 133 SE--ITAHVGEELIVVLDGTVRQTLGDAAFVLHPGDSLHFMGDTPHSFANVGDVPARLLW 190 Query: 183 VVSS 186 +S Sbjct: 191 TGTS 194 >ref|YP_004753344.1| MerR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62521.1| Transcriptional regulator, MerR family [Collimonas fungivorans Ter331] Length = 204 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 13/167 (7%) Query: 4 QIGSRIRECRRAKNITLQVLSDETALSTGFLSKLERGEASASIANLISISKYLGLSLQDL 63 Q+GS IR R A TL ++ ET L+ GF+S+LER + S SI +L+ I+K LG+++ DL Sbjct: 5 QLGSSIRARRHAVKKTLVQVAAETGLTAGFISQLERSQTSPSITSLVVIAKALGVTIGDL 64 Query: 64 FQTSTEAAPPPPDYVLSKAKARNDEAPLSAAG--YTFHRSCGDLPGQQLAAFELEFPANQ 121 + + P R+ P S A + R PG Q+ + + PA Sbjct: 65 IKQPAQLRPD---------TYRSQRQPYSVASGRVKYERLSTVFPGSQVHSVKFTMPAGY 115 Query: 122 ENQPVLVSHEGEEVLYMLDGKLEFHIGDDVLILERGDCLHFNCEKPH 168 +++ LVSHEG+E++++L G++ + +G D +L GD LHF+ PH Sbjct: 116 KSE--LVSHEGDEMIFVLSGQVGYTVGKDSYVLSVGDSLHFDANIPH 160 >ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 5/186 (2%) Query: 2 AIQIGSRIRECRRAKNITLQVLSDETALSTGFLSKLERGEASASIANLISISKYLGLSLQ 61 A IG+++RE R+ ++TLQ L+ +T LS FLS++E + +A L +++ L ++L Sbjct: 15 AFNIGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALG 74 Query: 62 DLFQTSTEAAPPPPDYVLSKAKARNDEAPLSAAG---YTFHRSCGDLPGQQLAAFELEFP 118 FQ S E K + R D P G Y + + + F +EFP Sbjct: 75 HFFQESVEDDRIA--ITRKKERVRLDRRPHQEKGLVHYIYTALETKKSNKSMEPFLVEFP 132 Query: 119 ANQENQPVLVSHEGEEVLYMLDGKLEFHIGDDVLILERGDCLHFNCEKPHMGRNIGAKTA 178 ++ + V +SHEGEE LY+++G++EF D V L+ GD ++ E H R +G +TA Sbjct: 133 TQEKEEMVFLSHEGEEFLYVMEGQVEFRTLDRVETLDPGDSIYIESELSHSFRRVGNETA 192 Query: 179 RLMMVV 184 R + VV Sbjct: 193 RALAVV 198 >ref|YP_509988.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gb|ABD54963.1| transcriptional regulator, XRE family with cupin sensor [Jannaschia sp. CCS1] Length = 205 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 97/179 (54%), Gaps = 9/179 (5%) Query: 5 IGSRIRECRRAKNITLQVLSDETALSTGFLSKLERGEASASIANLISISKYLGLSLQDLF 64 +G+ IR+ R+ ++TLQ L D+ LS G+LS++ERG+A+ S+ L I++ L + L+ Sbjct: 12 LGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVELEYFI 71 Query: 65 QTSTEAAPPPPDYVLSKAKARNDEAPLSAAGYTFHRSCGDLPGQQLAAFELEFPANQENQ 124 T P P LS+ AR + + + + D PG +L+ + L P ++ Sbjct: 72 AT------PKPADSLSRGGAR-PQFSIDGSSILYESVGADFPGAELSCYILHVPPGYASE 124 Query: 125 PVLVSHEGEEVLYMLDGKLEFHIGDDVLILERGDCLHFNCEKPHMGRNIGAKTARLMMV 183 +V HEGEE++++L G++ +G IL++GD LH++ PH N T R++ Sbjct: 125 --VVHHEGEEIIFLLSGEITQTLGGQSFILQQGDSLHYSGSTPHSWSNETQATTRILWT 181