BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0039.p (514 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774517.1| gluconokinase [Herbaspirillum seropedicae Sm... 778 0.0 ref|YP_004755066.1| gluconokinase [Collimonas fungivorans Ter331... 767 0.0 ref|YP_002947972.1| gluconate kinase [Variovorax paradoxus S110]... 733 0.0 ref|YP_004157169.1| gluconate kinase [Variovorax paradoxus EPS] ... 733 0.0 ref|YP_004860371.1| gluconate kinase [Bacillus coagulans 36D1] >... 660 0.0 >ref|YP_003774517.1| gluconokinase [Herbaspirillum seropedicae SmR1] gb|ADJ62609.1| gluconokinase protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/510 (77%), Positives = 444/510 (87%), Gaps = 2/510 (0%) Query: 1 MSHFMLGVDIGTTSTKTVVFTLDGQVVAQHAVEYPVLCTEPGMSEQDPLQMFDAVLGSIA 60 ++ +MLGVDIGTTSTK+VVFTLDG+VVAQHA EYPVLCTEPGM+EQDP Q+ A + Sbjct: 6 LARYMLGVDIGTTSTKSVVFTLDGKVVAQHAEEYPVLCTEPGMAEQDPEQIVAAA--LAS 63 Query: 61 GAVAAXAAKAAPGDIELVSFSAAMHSLIALDGDNCLLSNSITWGDIRASVWAERIKNEFD 120 A A AAKAAP +I L+SFSAAMHS+IALD +N LLSNSITWGDIRASVWAERIK+E D Sbjct: 64 IAGAVKAAKAAPQEIALLSFSAAMHSVIALDAENRLLSNSITWGDIRASVWAERIKHEHD 123 Query: 121 GQAIYRRTGTPIHPMSPLCKLMWMRHEKADIFKQAARFVGIKEYVLFRLFGEWLVDYSIA 180 G AIYRRTGTP+HPMSPLCKLMWMRHEK D+F +AARFVGIKEY+L++LFG+W+VD+SIA Sbjct: 124 GNAIYRRTGTPVHPMSPLCKLMWMRHEKPDVFHRAARFVGIKEYLLYQLFGQWVVDHSIA 183 Query: 181 SATGMFNLEQLDWDEGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIG 240 SATGMFNL +L WD+GALALL V QLP PVPTTH+L L + +A++LGL DTPF+IG Sbjct: 184 SATGMFNLRELAWDQGALALLGVRPDQLPTPVPTTHRLPALSSEMAQRLGLSVDTPFIIG 243 Query: 241 ANDGVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPV 300 ANDGVLSNLGVNAI G VAVTIGTSGAMRTV++ P TD GR FCYALTE+HWVVGGPV Sbjct: 244 ANDGVLSNLGVNAIEIGHVAVTIGTSGAMRTVIDEPRTDPQGRLFCYALTEKHWVVGGPV 303 Query: 301 NNGGNVFRWVRDELATAEAEQARKDGVDPYDALTRIAEHIAPGAEGLLFHPYLSGERAPL 360 NNGGN+FRWVRDELATAEA AR++GVDPY+ALTRIAE + PGAEGLLFHP+++GERAPL Sbjct: 304 NNGGNIFRWVRDELATAEAAAAREEGVDPYEALTRIAEKVRPGAEGLLFHPFMAGERAPL 363 Query: 361 WNADLRGSFFGLALHHRKEHMIRAALEGVIFNLYSILPAVEDLIGPTKRMMATGGFARSA 420 WNADLRGSFFGLALHH K HMIRAALEGVIFNLYSILPA+E+L+GPTKRMMATGGFARSA Sbjct: 364 WNADLRGSFFGLALHHGKHHMIRAALEGVIFNLYSILPALEELVGPTKRMMATGGFARSA 423 Query: 421 LWRQMMADIFNREVVVPQSVESSCLGAAVLGLLALGKIKSLDVISDMVGSTNRHLPIPQN 480 LWRQMMADIFNREVVVP+SVESSCLGAAVLG ALG + SL VIS MVGSTN H P + Sbjct: 424 LWRQMMADIFNREVVVPESVESSCLGAAVLGAWALGLVPSLSVISGMVGSTNHHAPEAEA 483 Query: 481 VAIYDRLRPIFMAIPHKLADEYRALSAFQR 510 VA+Y RL+PIF AIP KL EY A++AFQR Sbjct: 484 VAVYGRLQPIFAAIPAKLEAEYHAIAAFQR 513 >ref|YP_004755066.1| gluconokinase [Collimonas fungivorans Ter331] gb|AEK64243.1| Gluconokinase [Collimonas fungivorans Ter331] Length = 522 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/509 (73%), Positives = 427/509 (83%), Gaps = 2/509 (0%) Query: 4 FMLGVDIGTTSTKTVVFTLDGQVVAQHAVEYPVLCTEPGMSEQDPLQMFDAVLGSIAGAV 63 +MLGVDIGTTSTK V+FT GQVVAQHAVEYP+LCT PGM+EQDPLQ++DAVL +I AV Sbjct: 7 YMLGVDIGTTSTKAVLFTTQGQVVAQHAVEYPLLCTTPGMAEQDPLQIYDAVLSAIKNAV 66 Query: 64 AAXAAKAA--PGDIELVSFSAAMHSLIALDGDNCLLSNSITWGDIRASVWAERIKNEFDG 121 A K I+LVSFSAAMHS+IA+ D LLSNSITWGD RA WA RI++E G Sbjct: 67 GNAAGKNGVEAAQIKLVSFSAAMHSVIAVGQDGALLSNSITWGDNRAGAWANRIRDELGG 126 Query: 122 QAIYRRTGTPIHPMSPLCKLMWMRHEKADIFKQAARFVGIKEYVLFRLFGEWLVDYSIAS 181 IY RTGTPIHPMSPLCK+MW+RH++ +F + ARFVG+KEYVL+RLFG+WLVD+SIAS Sbjct: 127 HEIYLRTGTPIHPMSPLCKIMWLRHDQPQLFARTARFVGVKEYVLYRLFGDWLVDHSIAS 186 Query: 182 ATGMFNLEQLDWDEGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIGA 241 ATGMFNL+QLDWD+GAL LL + + L VPTTH L GL A+A+QLGL TPFVIGA Sbjct: 187 ATGMFNLQQLDWDQGALELLGIGPQHLSTLVPTTHHLSGLAPAMAQQLGLAPATPFVIGA 246 Query: 242 NDGVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPVN 301 NDGVLSNLGVNAI PGQVAVTIGTSGAMRTV+++P+TD SGRTFCYALT +HWVVGGP N Sbjct: 247 NDGVLSNLGVNAIGPGQVAVTIGTSGAMRTVIDKPLTDPSGRTFCYALTAKHWVVGGPTN 306 Query: 302 NGGNVFRWVRDELATAEAEQARKDGVDPYDALTRIAEHIAPGAEGLLFHPYLSGERAPLW 361 NGG++F WVRDELATAEA A+ G+DPYDALT IAE ++ GAEGLLFHPYL+GERAPLW Sbjct: 307 NGGSIFHWVRDELATAEAAAAKAAGLDPYDALTNIAEGVSAGAEGLLFHPYLAGERAPLW 366 Query: 362 NADLRGSFFGLALHHRKEHMIRAALEGVIFNLYSILPAVEDLIGPTKRMMATGGFARSAL 421 NAD RGS+FGLA HH K HMIRAALEGVIF+LYSILPAVEDLIGPT MMATGGFARS+L Sbjct: 367 NADARGSYFGLATHHGKPHMIRAALEGVIFSLYSILPAVEDLIGPTTHMMATGGFARSSL 426 Query: 422 WRQMMADIFNREVVVPQSVESSCLGAAVLGLLALGKIKSLDVISDMVGSTNRHLPIPQNV 481 WRQMMADIF REVVVP+SVESSCLGAAVLGL ALGK+ SLDVI MVGST+RH+PI +NV Sbjct: 427 WRQMMADIFEREVVVPESVESSCLGAAVLGLYALGKVDSLDVIGGMVGSTHRHVPIAENV 486 Query: 482 AIYDRLRPIFMAIPHKLADEYRALSAFQR 510 A+Y RL PI+ AIP +L +YR LS FQR Sbjct: 487 ALYRRLWPIYAAIPKQLEQQYRLLSQFQR 515 >ref|YP_002947972.1| gluconate kinase [Variovorax paradoxus S110] gb|ACS22706.1| gluconate kinase [Variovorax paradoxus S110] Length = 519 Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/510 (68%), Positives = 421/510 (82%), Gaps = 2/510 (0%) Query: 1 MSHFMLGVDIGTTSTKTVVFTLDGQVVAQHAVEYPVLCTEPGMSEQDPLQMFDAVLGSIA 60 M ++GVDIGTTSTK V FT G+V+A AVEYP+L E +EQDP Q+F AVL +IA Sbjct: 1 MGRIVIGVDIGTTSTKAVAFTPAGRVLAHDAVEYPLLQPEAAAAEQDPEQIFQAVLAAIA 60 Query: 61 GAVAAXAAKAAPGDIELVSFSAAMHSLIALDGDNCLLSNSITWGDIRASVWAERIKNEFD 120 G V +KAAP D+ VSFSAAMHSLI +D L+ SITW D RAS WA RI++E+D Sbjct: 61 GCV--KQSKAAPADVLAVSFSAAMHSLILVDAAGAPLTRSITWADHRASAWAVRIRDEWD 118 Query: 121 GQAIYRRTGTPIHPMSPLCKLMWMRHEKADIFKQAARFVGIKEYVLFRLFGEWLVDYSIA 180 G AIYRRTGTPIHPMSPL KL+W+RHE+A++F +AARFVGIKEYV FRLFG+W VD+SIA Sbjct: 119 GLAIYRRTGTPIHPMSPLAKLVWLRHERAELFARAARFVGIKEYVFFRLFGQWQVDHSIA 178 Query: 181 SATGMFNLEQLDWDEGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIG 240 SATG+F++E+LDWD GALAL V A QLP+PVPTT ++GL A A QLGL DTPFVIG Sbjct: 179 SATGLFDIERLDWDAGALALAGVRAEQLPRPVPTTWHIEGLAADTAAQLGLARDTPFVIG 238 Query: 241 ANDGVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPV 300 ANDGVLSNLGVNA+ PG+VAVTIGTSGAMRTVV+ P+TD GRTFCYAL ER WVVGGPV Sbjct: 239 ANDGVLSNLGVNAMAPGEVAVTIGTSGAMRTVVDHPMTDPEGRTFCYALAERRWVVGGPV 298 Query: 301 NNGGNVFRWVRDELATAEAEQARKDGVDPYDALTRIAEHIAPGAEGLLFHPYLSGERAPL 360 NNGG + RWVRDE A+AEAE A++ G+D Y+ LTRIAE ++ G+EGL+FHP+L+GERAP Sbjct: 299 NNGGIILRWVRDEFASAEAETAKRLGIDTYEVLTRIAERVSAGSEGLVFHPFLTGERAPY 358 Query: 361 WNADLRGSFFGLALHHRKEHMIRAALEGVIFNLYSILPAVEDLIGPTKRMMATGGFARSA 420 WNADLRGSFFGL +HHRKEHMIRA LEGVIFNL+SILPAVE + GP+ R+ ATGGFARS Sbjct: 359 WNADLRGSFFGLGIHHRKEHMIRAVLEGVIFNLHSILPAVESIAGPSARIKATGGFARSG 418 Query: 421 LWRQMMADIFNREVVVPQSVESSCLGAAVLGLLALGKIKSLDVISDMVGSTNRHLPIPQN 480 +WRQMMAD+F+REVVVP+S ESSCLGAAVLGL ALG + SLDV++ MVG+T+RH P +N Sbjct: 419 MWRQMMADVFDREVVVPESFESSCLGAAVLGLYALGHVDSLDVVAGMVGATHRHTPNAKN 478 Query: 481 VAIYDRLRPIFMAIPHKLADEYRALSAFQR 510 VA+Y +L P+F+++PHKL +EYR L+AFQ+ Sbjct: 479 VALYRQLLPVFLSLPHKLGEEYRLLAAFQQ 508 >ref|YP_004157169.1| gluconate kinase [Variovorax paradoxus EPS] gb|ADU39058.1| gluconate kinase [Variovorax paradoxus EPS] Length = 519 Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/510 (68%), Positives = 421/510 (82%), Gaps = 2/510 (0%) Query: 1 MSHFMLGVDIGTTSTKTVVFTLDGQVVAQHAVEYPVLCTEPGMSEQDPLQMFDAVLGSIA 60 M ++GVDIGTTSTK V FT G+V+A HAV+YP+L E G +EQDP Q+F AVL +IA Sbjct: 1 MGRTVIGVDIGTTSTKAVAFTPAGRVLAHHAVDYPLLQPEAGAAEQDPEQIFQAVLAAIA 60 Query: 61 GAVAAXAAKAAPGDIELVSFSAAMHSLIALDGDNCLLSNSITWGDIRASVWAERIKNEFD 120 G V +KAAP D+ VSFSAAMHSLI +DG L+ SITW D RA+ WAERI++E+D Sbjct: 61 GCV--QESKAAPADVLAVSFSAAMHSLILVDGAGAPLTASITWADQRAARWAERIRDEWD 118 Query: 121 GQAIYRRTGTPIHPMSPLCKLMWMRHEKADIFKQAARFVGIKEYVLFRLFGEWLVDYSIA 180 G AIYRRTGTPIHPMSPL KL+W+RHE+ ++F AARFVGIKEYV FRLFG+W VD+SIA Sbjct: 119 GLAIYRRTGTPIHPMSPLVKLVWLRHERPELFASAARFVGIKEYVFFRLFGQWQVDHSIA 178 Query: 181 SATGMFNLEQLDWDEGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIG 240 SATG+FN+E+LDWDEGALAL V A QL +PVPTT ++GL A VA QLGL TDTPFVIG Sbjct: 179 SATGLFNIERLDWDEGALALAGVRADQLSRPVPTTWHIEGLAADVAAQLGLATDTPFVIG 238 Query: 241 ANDGVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPV 300 ANDGVLSNLGVNA+ PG+VAVTIGTSGAMRTVV+ P+TD GRTFCYAL ER WVVGGPV Sbjct: 239 ANDGVLSNLGVNAVAPGEVAVTIGTSGAMRTVVDHPMTDPEGRTFCYALAERRWVVGGPV 298 Query: 301 NNGGNVFRWVRDELATAEAEQARKDGVDPYDALTRIAEHIAPGAEGLLFHPYLSGERAPL 360 NNGG + RWVRDE A+AEAE A++ G+D Y+ LTRIAE ++ G+EGL+FHP+L+GERAP Sbjct: 299 NNGGIILRWVRDEFASAEAETAKRLGIDTYEVLTRIAERVSAGSEGLVFHPFLTGERAPY 358 Query: 361 WNADLRGSFFGLALHHRKEHMIRAALEGVIFNLYSILPAVEDLIGPTKRMMATGGFARSA 420 WNADLRGSFFGL +HHRKEHMIRA LEGVIFNLYSILPAVE + G + + ATGGFARS Sbjct: 359 WNADLRGSFFGLGIHHRKEHMIRAVLEGVIFNLYSILPAVESIAGRSAHIKATGGFARSG 418 Query: 421 LWRQMMADIFNREVVVPQSVESSCLGAAVLGLLALGKIKSLDVISDMVGSTNRHLPIPQN 480 +WRQMMAD+F+REVVVP+S ESSCLGAAVLGL ALG + SLDV++ MVG+T+RH P +N Sbjct: 419 MWRQMMADVFDREVVVPESFESSCLGAAVLGLYALGHVDSLDVVAGMVGATHRHTPNAKN 478 Query: 481 VAIYDRLRPIFMAIPHKLADEYRALSAFQR 510 A+Y +L P+++++P KL +EYR L+AFQ+ Sbjct: 479 AALYRQLLPVYLSLPRKLGEEYRLLAAFQQ 508 >ref|YP_004860371.1| gluconate kinase [Bacillus coagulans 36D1] gb|AEP01591.1| gluconate kinase [Bacillus coagulans 36D1] Length = 511 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/511 (59%), Positives = 399/511 (78%), Gaps = 2/511 (0%) Query: 4 FMLGVDIGTTSTKTVVFTLDGQVVAQHAVEYPVLCTEPGMSEQDPLQMFDAVLGSIAGAV 63 + LGVDIGTT+TK+V+F G+V++ H YP+ P ++EQ+P ++F AV+ S+ A+ Sbjct: 3 YYLGVDIGTTTTKSVLFGEKGKVISMHHAGYPLYSPSPQVAEQNPDEIFRAVIDSMKTAI 62 Query: 64 AAXAAKAAPGDIELVSFSAAMHSLIALDGDNCLLSNSITWGDIRASVWAERIKNEFDGQA 123 + P +I+LVSFS+AMHSLIA+D D L+N ITW D RA+ WA++IK+E+ GQ Sbjct: 63 VK--SDIDPSEIKLVSFSSAMHSLIAVDKDGKPLTNCITWADARAAKWAKKIKDEWHGQD 120 Query: 124 IYRRTGTPIHPMSPLCKLMWMRHEKADIFKQAARFVGIKEYVLFRLFGEWLVDYSIASAT 183 IYRRTGTPIHPMSPL K+ W+RHE+ ++FK+ +F+GIKEY+ +R FG+++VDYS+ASAT Sbjct: 121 IYRRTGTPIHPMSPLSKITWLRHEEQELFKKTFKFIGIKEYIFYRFFGQYVVDYSLASAT 180 Query: 184 GMFNLEQLDWDEGALALLQVDARQLPKPVPTTHQLQGLDAAVAEQLGLRTDTPFVIGAND 243 G+FNL LDWD+ AL + + A +L KPVPTT L GL A + G+ DTPFV GA+D Sbjct: 181 GLFNLHDLDWDKEALHVAGITADKLSKPVPTTFSLTGLAPEYAVETGIPQDTPFVAGASD 240 Query: 244 GVLSNLGVNAIHPGQVAVTIGTSGAMRTVVERPVTDASGRTFCYALTERHWVVGGPVNNG 303 GVLSNLGVNAI PG VA+TIGTSGA+RTV ++PVTD GR FCYALTE HWVVGGPVNNG Sbjct: 241 GVLSNLGVNAIDPGVVAITIGTSGAIRTVTDKPVTDPKGRIFCYALTENHWVVGGPVNNG 300 Query: 304 GNVFRWVRDELATAEAEQARKDGVDPYDALTRIAEHIAPGAEGLLFHPYLSGERAPLWNA 363 G FRWVRDELA AE E A++ G+DPY+ LT+IA +APG++GL+FHPYL+GERAP+WNA Sbjct: 301 GMTFRWVRDELAAAEVETAKRLGIDPYEVLTKIAARVAPGSDGLIFHPYLAGERAPIWNA 360 Query: 364 DLRGSFFGLALHHRKEHMIRAALEGVIFNLYSILPAVEDLIGPTKRMMATGGFARSALWR 423 D RGSFFGL LHH++EHM+RA LEGVI+NLY+++ A++++IG K++ ATGGFARS LWR Sbjct: 361 DARGSFFGLGLHHKREHMVRAVLEGVIYNLYTVMLALQEMIGIPKKIQATGGFARSDLWR 420 Query: 424 QMMADIFNREVVVPQSVESSCLGAAVLGLLALGKIKSLDVISDMVGSTNRHLPIPQNVAI 483 QM+ADIFN+EVVVP+S ESSCLGA VLG+ AL +I V+SD +G+T+ H PIP+N A+ Sbjct: 421 QMLADIFNQEVVVPESFESSCLGAIVLGMYALDEIDDFSVVSDWIGATHTHRPIPENTAV 480 Query: 484 YDRLRPIFMAIPHKLADEYRALSAFQRLDIK 514 Y+ + PI++ I L EY ++AFQR +K Sbjct: 481 YEEILPIYIRISRLLEGEYTNIAAFQRKWVK 511