BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0038.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774516.1| high-affinity gluconate permease [Herbaspiri... 454 e-126 ref|YP_002947971.1| gluconate transporter [Variovorax paradoxus ... 383 e-104 ref|YP_004157170.1| gluconate transporter [Variovorax paradoxus ... 374 e-101 ref|NP_251012.1| gluconate permease [Pseudomonas aeruginosa PAO1... 370 e-101 ref|ZP_07796637.1| gluconate permease [Pseudomonas aeruginosa 39... 369 e-100 >ref|YP_003774516.1| high-affinity gluconate permease [Herbaspirillum seropedicae SmR1] gb|ADJ62608.1| high-affinity gluconate permease protein [Herbaspirillum seropedicae SmR1] Length = 450 Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust. Identities = 235/257 (91%), Positives = 249/257 (96%) Query: 1 VIIAGPMFGAFIAKYVDIKPSDELMEQLAREPQTKDLPGFAITLVTVLSPVFLMLLKTFV 60 VIIAGPMFGAFI++YVDIKPS+ELM QL REPQT LPGFA TL+TVL+PVFLMLLKT V Sbjct: 194 VIIAGPMFGAFISRYVDIKPSEELMAQLVREPQTTKLPGFATTLITVLAPVFLMLLKTLV 253 Query: 61 DVTLPEGNAMRDLMDFIGNPIVALLAALLLSLYTFGVARGFTRQQVLKFVDQSLAPTAAI 120 DVTLPEG+AMRDLMDFIGNPIVALLAALLL+++TFG+ARGFTRQQVLKFVDQSLAPTAAI Sbjct: 254 DVTLPEGHAMRDLMDFIGNPIVALLAALLLAIWTFGIARGFTRQQVLKFVDQSLAPTAAI 313 Query: 121 VLIIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGA 180 VLIIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGA Sbjct: 314 VLIIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGA 373 Query: 181 GIVAPLVTLIPGTNRELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTAMET 240 GIVAPLV LIPGTN+ELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWT MET Sbjct: 374 GIVAPLVALIPGTNKELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTVMET 433 Query: 241 IISVVALVFIMLLNLVV 257 +ISVVA++FIMLLNLVV Sbjct: 434 LISVVAIIFIMLLNLVV 450 >ref|YP_002947971.1| gluconate transporter [Variovorax paradoxus S110] gb|ACS22705.1| gluconate transporter [Variovorax paradoxus S110] Length = 450 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/256 (78%), Positives = 227/256 (88%) Query: 2 IIAGPMFGAFIAKYVDIKPSDELMEQLAREPQTKDLPGFAITLVTVLSPVFLMLLKTFVD 61 +IAGP+FG FI+KYV + S ELMEQLA EP+ ++LPGF ITL+TVL PV LMLLKTF D Sbjct: 195 MIAGPIFGKFISKYVPGEASPELMEQLAHEPEARELPGFGITLLTVLLPVGLMLLKTFAD 254 Query: 62 VTLPEGNAMRDLMDFIGNPIVALLAALLLSLYTFGVARGFTRQQVLKFVDQSLAPTAAIV 121 V L + N MR MDFIG+PI ALLAALLLSLYTFG ARGFT +Q++KFVD SLAPTAAIV Sbjct: 255 VALDDKNVMRHWMDFIGHPITALLAALLLSLYTFGTARGFTAKQIMKFVDDSLAPTAAIV 314 Query: 122 LIIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGAG 181 LIIGAGGGFKQMLV SGVG AIGQ+A+HAQ+SP+LLAW VAG+IR+ATGSATVATITGAG Sbjct: 315 LIIGAGGGFKQMLVASGVGNAIGQMALHAQVSPILLAWLVAGLIRIATGSATVATITGAG 374 Query: 182 IVAPLVTLIPGTNRELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTAMETI 241 IVAPL T++PG NRELLVLATGAGSLILSHVNDAGFWLVK+YFNM+V ETFKTWT MET+ Sbjct: 375 IVAPLATMVPGVNRELLVLATGAGSLILSHVNDAGFWLVKQYFNMTVAETFKTWTVMETL 434 Query: 242 ISVVALVFIMLLNLVV 257 ISVVA+VFIMLL +VV Sbjct: 435 ISVVAIVFIMLLGMVV 450 >ref|YP_004157170.1| gluconate transporter [Variovorax paradoxus EPS] gb|ADU39059.1| gluconate transporter [Variovorax paradoxus EPS] Length = 450 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/256 (76%), Positives = 225/256 (87%) Query: 2 IIAGPMFGAFIAKYVDIKPSDELMEQLAREPQTKDLPGFAITLVTVLSPVFLMLLKTFVD 61 +IAGP+FG +I+KYV + S ELMEQLAREP+ ++LPGF ITLVT+L PV LMLLKTF D Sbjct: 195 MIAGPIFGKYISKYVPGEASPELMEQLAREPEARELPGFGITLVTILLPVALMLLKTFAD 254 Query: 62 VTLPEGNAMRDLMDFIGNPIVALLAALLLSLYTFGVARGFTRQQVLKFVDQSLAPTAAIV 121 V L + N +R +DFIG+PI ALLAALLLSLYTFG ARGFT +Q++KFVD SLAPTAAIV Sbjct: 255 VALDDKNVVRQWLDFIGHPITALLAALLLSLYTFGFARGFTSKQIMKFVDDSLAPTAAIV 314 Query: 122 LIIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGAG 181 LIIGAGGGFKQMLV SGVG AIG +A++AQ+SP+LLAW VAG+IR+ATGSATVATITGAG Sbjct: 315 LIIGAGGGFKQMLVTSGVGNAIGHMALNAQVSPILLAWLVAGLIRIATGSATVATITGAG 374 Query: 182 IVAPLVTLIPGTNRELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTAMETI 241 IVAPL TL+PG N ELLVLATGAGSLILSHVNDAGFWLVK+YFNM+V ETFKTWT MET+ Sbjct: 375 IVAPLATLVPGVNLELLVLATGAGSLILSHVNDAGFWLVKQYFNMTVAETFKTWTVMETL 434 Query: 242 ISVVALVFIMLLNLVV 257 ISVVAL FIMLL++ V Sbjct: 435 ISVVALAFIMLLSMFV 450 >ref|NP_251012.1| gluconate permease [Pseudomonas aeruginosa PAO1] ref|ZP_01365685.1| hypothetical protein PaerPA_01002811 [Pseudomonas aeruginosa PACS2] ref|YP_790918.1| gluconate permease [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002440572.1| gluconate permease [Pseudomonas aeruginosa LESB58] ref|ZP_04934083.1| gluconate permease [Pseudomonas aeruginosa 2192] ref|ZP_06878743.1| gluconate permease [Pseudomonas aeruginosa PAb1] sp|Q9ZIJ1.1|GNUT_PSEAE RecName: Full=Gluconate permease gb|AAG05710.1|AE004658_4 gluconate permease [Pseudomonas aeruginosa PAO1] gb|AAD01803.1| gluconate permease [Pseudomonas aeruginosa PAO1] gb|ABJ11501.1| gluconate permease [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ58202.1| gluconate permease [Pseudomonas aeruginosa 2192] emb|CAW27710.1| gluconate permease [Pseudomonas aeruginosa LESB58] gb|EGM12853.1| gluconate permease [Pseudomonas aeruginosa 138244] gb|EGM14575.1| gluconate permease [Pseudomonas aeruginosa 152504] dbj|GAA17902.1| gluconate permease [Pseudomonas aeruginosa NCMG1179] gb|AEO75202.1| gluconate permease [Pseudomonas aeruginosa M18] Length = 450 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/255 (74%), Positives = 221/255 (86%) Query: 3 IAGPMFGAFIAKYVDIKPSDELMEQLAREPQTKDLPGFAITLVTVLSPVFLMLLKTFVDV 62 IAGP+FGA +++Y+ PS EL+EQ+A EP+T+DLP F +TL TVL PVFLMLLKTF DV Sbjct: 196 IAGPLFGALVSRYIPGTPSAELVEQIAHEPETQDLPSFGVTLATVLLPVFLMLLKTFADV 255 Query: 63 TLPEGNAMRDLMDFIGNPIVALLAALLLSLYTFGVARGFTRQQVLKFVDQSLAPTAAIVL 122 P+G+A R MD IG+PI ALL ALL++LYTFG ARGF +++L+ +DQSLAPTAAIV+ Sbjct: 256 AFPDGHAFRAWMDMIGHPISALLLALLVALYTFGYARGFDSKKILRLLDQSLAPTAAIVM 315 Query: 123 IIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGAGI 182 IIGAGGGFKQMLV SGVG IG LAV+AQISP+LLAW VA VIR+ATGSATVATITGAGI Sbjct: 316 IIGAGGGFKQMLVASGVGDVIGHLAVNAQISPILLAWLVAAVIRIATGSATVATITGAGI 375 Query: 183 VAPLVTLIPGTNRELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTAMETII 242 V P++ LIPG NRELLVLATGAGSLILSHVNDAGFWLVK+YFNMSV ETFKTWTAMETI+ Sbjct: 376 VVPVIDLIPGVNRELLVLATGAGSLILSHVNDAGFWLVKQYFNMSVSETFKTWTAMETIL 435 Query: 243 SVVALVFIMLLNLVV 257 SVV LVFI+LL+LV+ Sbjct: 436 SVVGLVFILLLSLVL 450 >ref|ZP_07796637.1| gluconate permease [Pseudomonas aeruginosa 39016] gb|EFQ41733.1| gluconate permease [Pseudomonas aeruginosa 39016] dbj|BAK90180.1| gluconate permease [Pseudomonas aeruginosa NCGM2.S1] Length = 450 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 189/255 (74%), Positives = 221/255 (86%) Query: 3 IAGPMFGAFIAKYVDIKPSDELMEQLAREPQTKDLPGFAITLVTVLSPVFLMLLKTFVDV 62 IAGP+FGA +++Y+ PS EL+EQ+A +P+T+DLP F +TL TVL PVFLMLLKTF DV Sbjct: 196 IAGPLFGALVSRYIPGTPSAELVEQIAHKPETQDLPSFGVTLATVLLPVFLMLLKTFADV 255 Query: 63 TLPEGNAMRDLMDFIGNPIVALLAALLLSLYTFGVARGFTRQQVLKFVDQSLAPTAAIVL 122 P+G+A R MD IG+PI ALL ALL++LYTFG ARGF +++L+ +DQSLAPTAAIV+ Sbjct: 256 AFPDGHAFRAWMDMIGHPISALLLALLVALYTFGYARGFDSKKILRLLDQSLAPTAAIVM 315 Query: 123 IIGAGGGFKQMLVNSGVGTAIGQLAVHAQISPLLLAWFVAGVIRVATGSATVATITGAGI 182 IIGAGGGFKQMLV SGVG IG LAV+AQISP+LLAW VA VIR+ATGSATVATITGAGI Sbjct: 316 IIGAGGGFKQMLVASGVGDVIGHLAVNAQISPILLAWLVAAVIRIATGSATVATITGAGI 375 Query: 183 VAPLVTLIPGTNRELLVLATGAGSLILSHVNDAGFWLVKEYFNMSVGETFKTWTAMETII 242 V P++ LIPG NRELLVLATGAGSLILSHVNDAGFWLVK+YFNMSV ETFKTWTAMETI+ Sbjct: 376 VVPVIDLIPGVNRELLVLATGAGSLILSHVNDAGFWLVKQYFNMSVSETFKTWTAMETIL 435 Query: 243 SVVALVFIMLLNLVV 257 SVV LVFI+LL+LV+ Sbjct: 436 SVVGLVFILLLSLVL 450