BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0033.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774515.1| GntR family transcription regulator protein ... 531 e-149 ref|YP_004755065.1| gluconate utilization system Gnt-I transcrip... 482 e-134 ref|YP_001893756.1| LacI family transcriptional regulator [Burkh... 397 e-108 gb|EGP44576.1| LacI family regulatory protein 2 [Achromobacter x... 325 4e-87 ref|YP_004846383.1| lacI family transcriptional regulator [Pseud... 318 7e-85 >ref|YP_003774515.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62607.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 352 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 254/313 (81%), Positives = 279/313 (89%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 MTVSRALK+P LVQ+++R RI AI KLGYVPNQAA+TLASARSQV+ VLVPSLTNAVFI Sbjct: 40 MTVSRALKTPALVQEQSRQRILEAIDKLGYVPNQAAATLASARSQVVAVLVPSLTNAVFI 99 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 ETLSGIRDYL+ GYQFLIGETGY + KE LI+TYLAHAP GFLLSSS QHDIL+ + A Sbjct: 100 ETLSGIRDYLASVGYQFLIGETGYDRHKEEELIATYLAHAPAGFLLSSSQQHDILQSRPA 159 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 + IPAVRMFDLG+S D SVGFSQT+AG+A ARHL ERGYRRPAFLAAQLDPRMMKRRE Sbjct: 160 SRAIPAVRMFDLGRSQQDYSVGFSQTRAGHAVARHLAERGYRRPAFLAAQLDPRMMKRRE 219 Query: 181 GFRKGLSEAGLDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFEC 240 GFRKGL EAGL D+EVLLP PTTVDMGAQLL RVL+ PDCD+VFCCNDDLALGALFEC Sbjct: 220 GFRKGLQEAGLAADIEVLLPQPTTVDMGAQLLRRVLQDHPDCDSVFCCNDDLALGALFEC 279 Query: 241 QRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKAR 300 QR+GI VP+QMAIAGFNDLSWAACATPSITT+VTPRYDIGY++AEML+RQLKGE + K R Sbjct: 280 QRQGISVPRQMAIAGFNDLSWAACATPSITTVVTPRYDIGYQSAEMLVRQLKGEEIAKGR 339 Query: 301 LDLGFELAVREST 313 LDLGFELAVREST Sbjct: 340 LDLGFELAVREST 352 >ref|YP_004755065.1| gluconate utilization system Gnt-I transcriptional repressor [Collimonas fungivorans Ter331] gb|AEK64242.1| Gluconate utilization system Gnt-I transcriptional repressor [Collimonas fungivorans Ter331] Length = 350 Score = 482 bits (1241), Expect = e-134, Method: Compositional matrix adjust. Identities = 224/313 (71%), Positives = 266/313 (84%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 MTVSRALK+P LVQ EARDRIAAAI +LGYVPNQAASTLASA+SQVIGV+VPSL+N+VF+ Sbjct: 38 MTVSRALKTPALVQLEARDRIAAAIKQLGYVPNQAASTLASAKSQVIGVIVPSLSNSVFV 97 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 +TL+GIRD L+Q GY+FLIGE+ YS EKES+LISTYLAHAPDGFLLS +Q D LR QLA Sbjct: 98 DTLTGIRDSLNQHGYKFLIGESSYSPEKESQLISTYLAHAPDGFLLSGIEQQDALREQLA 157 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 N+PAVRMFDL N +++VGFS +AGY+ ARHLIERGYR+P FL AQLDPRMMKRR Sbjct: 158 THNVPAVRMFDLNPENGEVTVGFSHEEAGYSIARHLIERGYRQPGFLGAQLDPRMMKRRH 217 Query: 181 GFRKGLSEAGLDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFEC 240 GFRK LSEAG++PD+EVL PAP+TV++G ++L ++L+ P CDAVFCCNDDLALG LFEC Sbjct: 218 GFRKALSEAGINPDIEVLTPAPSTVELGTKMLGQILQQTPACDAVFCCNDDLALGVLFEC 277 Query: 241 QRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKAR 300 QRRG+ VP QMAIAGFNDL W+A A P ITTIVTPRYDIG+ AA++LI+ L+ E E Sbjct: 278 QRRGLSVPGQMAIAGFNDLPWSAFANPGITTIVTPRYDIGFTAAQLLIKLLRHETPETTS 337 Query: 301 LDLGFELAVREST 313 +DLGF+LA+R ST Sbjct: 338 VDLGFKLAIRSST 350 >ref|YP_001893756.1| LacI family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD14532.1| transcriptional regulator, LacI family [Burkholderia phytofirmans PsJN] Length = 364 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 186/312 (59%), Positives = 245/312 (78%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 MTVSRALK P + EAR R+ AA+ +LGYVPN AA TLA++RS V+ VLVPSL+N VF+ Sbjct: 52 MTVSRALKDPAQLSPEARARVEAAVTELGYVPNHAARTLATSRSHVVAVLVPSLSNTVFV 111 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 +TL+GI+D L AGYQ LIG TGYS K++ L+STYL+HAPDGFL++ D + +R++LA Sbjct: 112 DTLAGIQDCLGPAGYQILIGNTGYSSGKQAELVSTYLSHAPDGFLVTGIDGSEAIRQRLA 171 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 AA +P V M+DL ++ + SVGFSQ +AG+ ++L+ERGY+ P F+AAQLDPR M+RR Sbjct: 172 AARVPVVHMYDLSRTPGEWSVGFSQQRAGFTLTKYLLERGYQCPGFVAAQLDPRTMQRRA 231 Query: 181 GFRKGLSEAGLDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFEC 240 GFR+ L EAGLDPDVE+L P++V +G++LLA++L AP CDA+FCCNDDLALGALFEC Sbjct: 232 GFRRALREAGLDPDVEILTDEPSSVGLGSKLLAQMLSHAPACDAIFCCNDDLALGALFEC 291 Query: 241 QRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKAR 300 QRRGI VP ++AIAGFNDL +A +TPS+TT+ TPRY IG++AA +L++ L G P E++ Sbjct: 292 QRRGISVPGRIAIAGFNDLPPSAWSTPSLTTVTTPRYQIGFEAARLLLQILDGHPPERSC 351 Query: 301 LDLGFELAVRES 312 +DL F L RES Sbjct: 352 IDLRFTLTPRES 363 >gb|EGP44576.1| LacI family regulatory protein 2 [Achromobacter xylosoxidans AXX-A] Length = 350 Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 157/314 (50%), Positives = 215/314 (68%), Gaps = 1/314 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 +TVSRAL++P+ V + R RIA +LGYVPN AAS LAS RSQ I VL+PSL+N VF+ Sbjct: 37 ITVSRALRTPDKVAEAVRQRIAEVCRELGYVPNHAASALASTRSQTIVVLIPSLSNVVFV 96 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 + ++GI+D L + GY LIG TGYS + E L+ YL H PDG +L+ D + + L Sbjct: 97 DIITGIKDVLDEQGYHLLIGVTGYSPDAEEALLRKYLQHLPDGLILTGIDHNPGVWELLR 156 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 A +P V + MSVGFSQ ++GYAA RHL+ERG+RR + AQLDPR ++R E Sbjct: 157 AQAMPTVHTIETLAGGEGMSVGFSQVESGYAAGRHLVERGHRRIGIVGAQLDPRSLRRCE 216 Query: 181 GFRKGLSEAGL-DPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFE 239 G R+ L +AGL DP +E++ P +++ +GA LL +L PDCDAVF CNDDLA GA+F+ Sbjct: 217 GCRQSLRDAGLYDPALEIMTPEKSSIALGATLLETLLARHPDCDAVFFCNDDLAQGAVFQ 276 Query: 240 CQRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKA 299 C R G+ VP Q+A+ GF+D + A TP ++TI TPRY+IG +AA++L+R L G+P+ + Sbjct: 277 CGRLGVSVPGQVALVGFHDFAGTAWTTPPLSTIATPRYEIGREAAQLLMRHLAGQPIAQR 336 Query: 300 RLDLGFELAVREST 313 +DLGF L RE+T Sbjct: 337 HVDLGFTLVRRETT 350 >ref|YP_004846383.1| lacI family transcriptional regulator [Pseudogulbenkiania sp. NH8B] dbj|BAK75969.1| transcriptional regulator, LacI family [Pseudogulbenkiania sp. NH8B] Length = 339 Score = 318 bits (815), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 170/314 (54%), Positives = 210/314 (66%), Gaps = 2/314 (0%) Query: 1 MTVSRALKSPELVQQEARDRIAAAIGKLGYVPNQAASTLASARSQVIGVLVPSLTNAVFI 60 +TVSRAL SPE V R +I A+ +LGYVPN++A LASARSQ + VL+PSLTN VFI Sbjct: 27 ITVSRALYSPERVSDTLRSKILEAVDRLGYVPNRSARALASARSQTVLVLIPSLTNTVFI 86 Query: 61 ETLSGIRDYLSQAGYQFLIGETGYSKEKESRLISTYLAHAPDGFLLSSSDQHDILRRQLA 120 +TL+GI D L AGYQ LIG T YS +E +L+ YL H PDG L++ Q + L Sbjct: 87 DTLAGIEDVLRPAGYQMLIGNTHYSAGEEMQLLRAYLEHQPDGVLVTGLSQPPEFAQTLE 146 Query: 121 AANIPAVRMFDLGKSNSDMSVGFSQTKAGYAAARHLIERGYRRPAFLAAQLDPRMMKRRE 180 IPAV M DL ++ VGFSQ AG A RHL+ERG RR AF+ AQLD R++KR + Sbjct: 147 RQGIPAVYMMDL-TTDGRRCVGFSQEDAGEAITRHLLERGRRRIAFMGAQLDERVLKRLD 205 Query: 181 GFRKGLSEAG-LDPDVEVLLPAPTTVDMGAQLLARVLEIAPDCDAVFCCNDDLALGALFE 239 G+RK L AG D +E L PAP+T+ MGA L R+L+ PDCDAVFCCNDDLA+GAL Sbjct: 206 GYRKALRAAGRYDAALEDLDPAPSTMQMGADALTRLLQAHPDCDAVFCCNDDLAIGALAA 265 Query: 240 CQRRGIKVPQQMAIAGFNDLSWAACATPSITTIVTPRYDIGYKAAEMLIRQLKGEPVEKA 299 CQR G+ VPQ+MAIAGFNDL A TP +TT+ TPRY IG +AA +L+ + GE Sbjct: 266 CQRLGLAVPQRMAIAGFNDLQPAGWVTPPLTTVATPRYRIGTEAARLLLASIAGEADAVT 325 Query: 300 RLDLGFELAVREST 313 DLGF + R S+ Sbjct: 326 CHDLGFTVMPRASS 339