BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0030.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002796568.1| hypothetical protein LHK_02578 [Laribacter h... 328 6e-88 ref|YP_003442424.1| HipA domain-containing protein [Allochromati... 324 9e-87 ref|YP_004514204.1| HipA domain-containing protein [Methylomonas... 322 5e-86 ref|YP_003847613.1| HipA domain-containing protein [Gallionella ... 320 1e-85 ref|YP_004236003.1| HipA domain-containing protein [Acidovorax a... 303 2e-80 >ref|YP_002796568.1| hypothetical protein LHK_02578 [Laribacter hongkongensis HLHK9] gb|ACO75559.1| HipA domain protein [Laribacter hongkongensis HLHK9] Length = 469 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 166/285 (58%), Positives = 210/285 (73%) Query: 2 GNLLLGDAARDRFMETPAPEPVAMHAKGAAYARMAQDAARGDIPGSSAGGEQPKFLTFAE 61 GNLLLGD A+D F+ + PV +H K + Y R+A+ AARG++PGSSAGGEQPKF+++ + Sbjct: 181 GNLLLGDHAKDAFLTSTPVHPVELHDKASEYVRLAEQAARGEVPGSSAGGEQPKFVSYVQ 240 Query: 62 TPDGPRHVLVKFSLPDVNPVTARWRDLLLAEHHALNTLAAAGVDVAGSSVIDHGGQRFLE 121 TPDGPRHV+VKF+L D NPVT RWRDLLLAEH AL TL +G+ + ++D G QRFLE Sbjct: 241 TPDGPRHVIVKFTLDDHNPVTGRWRDLLLAEHLALETLNESGIPAVRTRIVDSGFQRFLE 300 Query: 122 VERFDRVGALGRRGVFSLTAVEAEFVGDASSPWPVIATRLAADGHITREAADGAALLYAF 181 +ERFDRVG GR+G+ S+ A++AEFVG ++ WP IA LA ITREAA A+LL A Sbjct: 301 IERFDRVGVSGRKGLISMKALDAEFVGAGAAEWPTIANALAKKECITREAAAVASLLQAI 360 Query: 182 GTLIGNTDMHNGNLSFTSEHGRPYGLAPAYDMLPMAFAPRSGGGLPDMLAPANLRACVDA 241 G LIGNTDMH GNLSF +EHGRPY ++PAYDMLPM FAP+SGGG+P L A L + A Sbjct: 361 GKLIGNTDMHTGNLSFVTEHGRPYDISPAYDMLPMGFAPKSGGGIPSTLPEATLHPDIPA 420 Query: 242 GTWVRALGLADDFLDRIRHEPRFSNDFLACIDALMAHVNGARDKM 286 TW+RA +A +L+R+R+E FS FL CIDAL AH+ A ++ Sbjct: 421 ETWIRANEVARRYLERLRNERGFSPAFLPCIDALSAHMETASSRI 465 >ref|YP_003442424.1| HipA domain-containing protein [Allochromatium vinosum DSM 180] gb|ADC61392.1| HipA domain protein [Allochromatium vinosum DSM 180] Length = 447 Score = 324 bits (831), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 174/282 (61%), Positives = 200/282 (70%) Query: 1 VGNLLLGDAARDRFMETPAPEPVAMHAKGAAYARMAQDAARGDIPGSSAGGEQPKFLTFA 60 VGNLLLG+ AR+RF+ P P PV M K Y ++A +AARGD PGSSAGGEQPKF TFA Sbjct: 158 VGNLLLGEMARERFLSAPPPTPVPMAEKAGHYVQLAAEAARGDTPGSSAGGEQPKFTTFA 217 Query: 61 ETPDGPRHVLVKFSLPDVNPVTARWRDLLLAEHHALNTLAAAGVDVAGSSVIDHGGQRFL 120 ETPDGPRHV+VKF+ P V+ RW DLLLAEH AL TL AGV A + VIDHG QRFL Sbjct: 218 ETPDGPRHVIVKFTEPVDGLVSERWSDLLLAEHLALETLREAGVAAARTRVIDHGQQRFL 277 Query: 121 EVERFDRVGALGRRGVFSLTAVEAEFVGDASSPWPVIATRLAADGHITREAADGAALLYA 180 EVERFDRVGA GRR + SL A +AEFVG WP++ RL+A G I EAAD A LL+A Sbjct: 278 EVERFDRVGAAGRRAIISLGAFDAEFVGSGRDRWPIVVRRLSASGEIRSEAADEADLLWA 337 Query: 181 FGTLIGNTDMHNGNLSFTSEHGRPYGLAPAYDMLPMAFAPRSGGGLPDMLAPANLRACVD 240 FGTLIGNTDMH NLSF SEHGRPYG+APAYDM PM FAPRSGGG+ D + A + + V Sbjct: 338 FGTLIGNTDMHLYNLSFVSEHGRPYGIAPAYDMSPMCFAPRSGGGMADTIQKATIHSDVS 397 Query: 241 AGTWVRALGLADDFLDRIRHEPRFSNDFLACIDALMAHVNGA 282 TW A LA DFL RI+ + FS F C+ +L H+ A Sbjct: 398 NETWRLAGQLARDFLARIQRQSVFSRRFDPCLHSLTQHIEAA 439 >ref|YP_004514204.1| HipA domain-containing protein [Methylomonas methanica MC09] gb|AEG01705.1| HipA domain protein [Methylomonas methanica MC09] Length = 447 Score = 322 bits (824), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 165/286 (57%), Positives = 206/286 (72%) Query: 1 VGNLLLGDAARDRFMETPAPEPVAMHAKGAAYARMAQDAARGDIPGSSAGGEQPKFLTFA 60 VGN+LLG+ A+DRF+ TP PEP+++ K A YAR+A +AARG+ PGSSAGGEQPKF +A Sbjct: 158 VGNILLGENAKDRFLATPIPEPISISQKAAEYARLALEAARGETPGSSAGGEQPKFTAYA 217 Query: 61 ETPDGPRHVLVKFSLPDVNPVTARWRDLLLAEHHALNTLAAAGVDVAGSSVIDHGGQRFL 120 TPDG RHV+VKFS + PV+ RWRDLLLAEH AL TL + A + +I+HG QRFL Sbjct: 218 LTPDGDRHVIVKFSELEDGPVSERWRDLLLAEHLALETLREDSIPAAKTQIINHGDQRFL 277 Query: 121 EVERFDRVGALGRRGVFSLTAVEAEFVGDASSPWPVIATRLAADGHITREAADGAALLYA 180 E+ERFDR+G+LGRR + SL A++AEF G + WPVI LA + + +AADG+ +L+A Sbjct: 278 EIERFDRIGSLGRRALHSLAALDAEFAGKGTGGWPVITRILADERQVHPDAADGSNILWA 337 Query: 181 FGTLIGNTDMHNGNLSFTSEHGRPYGLAPAYDMLPMAFAPRSGGGLPDMLAPANLRACVD 240 FGTLIGN+DMH GNLSF SEHGRPY +APAYDM PMAFAPR+GGGLPD L+ A + + Sbjct: 338 FGTLIGNSDMHTGNLSFISEHGRPYSIAPAYDMTPMAFAPRTGGGLPDSLSEAVIIGSIS 397 Query: 241 AGTWVRALGLADDFLDRIRHEPRFSNDFLACIDALMAHVNGARDKM 286 TW RA LA FL R+ FS F CI +L H+ AR K+ Sbjct: 398 NETWRRAASLASTFLARVMESKVFSQRFEPCIASLERHIETARAKI 443 >ref|YP_003847613.1| HipA domain-containing protein [Gallionella capsiferriformans ES-2] gb|ADL55849.1| HipA domain protein [Gallionella capsiferriformans ES-2] Length = 447 Score = 320 bits (821), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 167/286 (58%), Positives = 207/286 (72%) Query: 1 VGNLLLGDAARDRFMETPAPEPVAMHAKGAAYARMAQDAARGDIPGSSAGGEQPKFLTFA 60 VGNLLLG+ AR F+ P+P+ KG YAR+A +A++G+I GSSAGGEQPKF +A Sbjct: 158 VGNLLLGEMARSHFLAVRVPDPIMERQKGQEYARLALEASQGEIVGSSAGGEQPKFTAYA 217 Query: 61 ETPDGPRHVLVKFSLPDVNPVTARWRDLLLAEHHALNTLAAAGVDVAGSSVIDHGGQRFL 120 T DGPRHV+VKFS +PV+ RWRDLLLAEH AL TL +GV A + +++ G QRFL Sbjct: 218 MTKDGPRHVIVKFSEVQESPVSERWRDLLLAEHLALETLNQSGVLAAKTQIVEQGRQRFL 277 Query: 121 EVERFDRVGALGRRGVFSLTAVEAEFVGDASSPWPVIATRLAADGHITREAADGAALLYA 180 EVERFDR+G LGR V SL A++AEF+G + WP++A RLAA G I EAA+GAALL+A Sbjct: 278 EVERFDRIGELGRCAVISLAALDAEFIGLGAGGWPLMARRLAAIGEICSEAAEGAALLWA 337 Query: 181 FGTLIGNTDMHNGNLSFTSEHGRPYGLAPAYDMLPMAFAPRSGGGLPDMLAPANLRACVD 240 FGTLIGN+DMH+GNL+F SEHGRPY +APAYDM PMAFAPRSGGGLPD L+ A + A V+ Sbjct: 338 FGTLIGNSDMHSGNLAFVSEHGRPYSIAPAYDMTPMAFAPRSGGGLPDTLSDATIHASVN 397 Query: 241 AGTWVRALGLADDFLDRIRHEPRFSNDFLACIDALMAHVNGARDKM 286 TW++A LA FL R+ FS F CI A+ + AR K+ Sbjct: 398 NETWLQAEELAQKFLSRVMSATGFSPRFRPCIVAMELRIKTARAKI 443 >ref|YP_004236003.1| HipA domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX47436.1| HipA domain protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 445 Score = 303 bits (776), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 163/282 (57%), Positives = 198/282 (70%) Query: 1 VGNLLLGDAARDRFMETPAPEPVAMHAKGAAYARMAQDAARGDIPGSSAGGEQPKFLTFA 60 VGNLLLGD A +F+ PAP P+ + K AAYA +A AARG++PGSSAGGEQPKF+ FA Sbjct: 156 VGNLLLGDTAVHQFVHGPAPVPIPLQDKAAAYAALADAAARGEVPGSSAGGEQPKFIAFA 215 Query: 61 ETPDGPRHVLVKFSLPDVNPVTARWRDLLLAEHHALNTLAAAGVDVAGSSVIDHGGQRFL 120 ET GPRHVLVKF+ + PV+ RWRDLLLAEH ALN L+ AG+ + ++VIDH GQRFL Sbjct: 216 ETTSGPRHVLVKFTEAEPGPVSERWRDLLLAEHLALNVLSDAGIPASRTAVIDHAGQRFL 275 Query: 121 EVERFDRVGALGRRGVFSLTAVEAEFVGDASSPWPVIATRLAADGHITREAADGAALLYA 180 EVERFDR G GR G+FSL A++AEFVG + WP I L ++ EA D A+ L+A Sbjct: 276 EVERFDRAGPTGRIGLFSLAALDAEFVGQGTGGWPSIVQALVRQRCVSPEAVDMASRLWA 335 Query: 181 FGTLIGNTDMHNGNLSFTSEHGRPYGLAPAYDMLPMAFAPRSGGGLPDMLAPANLRACVD 240 FGTLIGNTDMH GNLSF S GRPY LAPAYDM PMAFAPR GGG+P + + V Sbjct: 336 FGTLIGNTDMHTGNLSFISGQGRPYALAPAYDMTPMAFAPRRGGGVPAAVPDPVILPAVP 395 Query: 241 AGTWVRALGLADDFLDRIRHEPRFSNDFLACIDALMAHVNGA 282 + W A+ +A +L +R P FS+ F AC+ AL AHV+ A Sbjct: 396 SRIWRDAVLMARQYLAALRGVPGFSDRFTACVHALQAHVDTA 437