BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0027.p (315 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774662.1| preprotein translocase subunit SecF protein ... 565 e-159 ref|YP_001352044.1| preprotein translocase subunit SecF [Janthin... 533 e-149 emb|CAL60533.2| Protein-export membrane protein SecF [Herminiimo... 522 e-146 ref|YP_004751424.1| preprotein translocase, auxillary membrane c... 520 e-146 ref|ZP_08274054.1| Protein-export membrane protein SecF [Oxaloba... 505 e-141 >ref|YP_003774662.1| preprotein translocase subunit SecF protein [Herbaspirillum seropedicae SmR1] gb|ADJ62754.1| preprotein translocase subunit SecF protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust. Identities = 275/314 (87%), Positives = 296/314 (94%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 MEFFRIKKDIPFMRHALIFN ISALTFV AVFFL S+GLHFSIEFTGGTVMEVAY K A+ Sbjct: 1 MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60 Query: 62 IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121 +E IRKS+EGLG+ DT VQSFGTAQDVMIRLPAQ GVN++QQ+EKV +ALKA DPDV+LQ Sbjct: 61 LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQTEKVNAALKADDPDVRLQ 120 Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181 RVEFVGPQVGDELAHDGL+ALGMVV+GIVIYLAFRFEWKFAVAAVIANLHD++IILGFFA Sbjct: 121 RVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGFFA 180 Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241 FFQWEFSLTVLAA+LAVLGYSVNESVVVFDRVREAFRDRR+GKLS PEVLNHAITST+SR Sbjct: 181 FFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSPPEVLNHAITSTMSR 240 Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301 T+ITHGSTEMMVL+M FGGPTLHYFA+ALTIGILFGIYSSVFVAAA+AMWLGVKREDLI Sbjct: 241 TVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDLI 300 Query: 302 KPAKPKDETDGAVV 315 KP K KDE GAVV Sbjct: 301 KPVKVKDENGGAVV 314 >ref|YP_001352044.1| preprotein translocase subunit SecF [Janthinobacterium sp. Marseille] gb|ABR88375.1| preprotein translocase SecF subunit [Janthinobacterium sp. Marseille] Length = 314 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 259/314 (82%), Positives = 282/314 (89%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 MEFFRIKKDIPFMRHALIFNVISALTFV AVFFLL RGLH SIEFTGGTVMEV Y + A+ Sbjct: 1 MEFFRIKKDIPFMRHALIFNVISALTFVAAVFFLLHRGLHLSIEFTGGTVMEVTYSQPAD 60 Query: 62 IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121 IE +R + LG+ D QVQSFGTAQDV+IRLP Q +SAQ SE+VI ALKAQD V+L+ Sbjct: 61 IEGVRGKLTDLGYVDMQVQSFGTAQDVLIRLPVQKNADSAQISERVIGALKAQDSTVELK 120 Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181 RVEFVGPQVGDEL HDGLMALGM+VIGIVIYLAFRFEWK+AV+A++ANLHDVVIILGFFA Sbjct: 121 RVEFVGPQVGDELTHDGLMALGMLVIGIVIYLAFRFEWKYAVSAILANLHDVVIILGFFA 180 Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRE FRDRR+GK+ EVLNHAIT TISR Sbjct: 181 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRETFRDRRFGKMPTEEVLNHAITQTISR 240 Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301 T+ITHGST++MVLSML FGGPTLHYFA+ALTIGI FGIYSSVFVAAA+AMWLGVKREDL+ Sbjct: 241 TVITHGSTQLMVLSMLFFGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLL 300 Query: 302 KPAKPKDETDGAVV 315 KP K KDE DGAVV Sbjct: 301 KPVKEKDEHDGAVV 314 >emb|CAL60533.2| Protein-export membrane protein SecF [Herminiimonas arsenicoxydans] Length = 315 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 248/315 (78%), Positives = 281/315 (89%) Query: 1 VMEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAA 60 +MEFFRIKKDIPFMRHALIFNVIS LTFV AVFFL+ +GLH SIEFTGGTVME+ YPK A Sbjct: 1 MMEFFRIKKDIPFMRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPA 60 Query: 61 NIENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQL 120 NIE +R + LG+TD QVQSFGTAQDV+IRLP Q VN+AQ SE+V++ALKAQD V L Sbjct: 61 NIEGVRTKLGELGYTDMQVQSFGTAQDVLIRLPVQQNVNTAQVSERVMTALKAQDETVSL 120 Query: 121 QRVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFF 180 +RVEFVGPQVG+EL HDGLMA+GM+VIG++IYLA RFEWK+AVAA+ ANLHDVVIILGFF Sbjct: 121 KRVEFVGPQVGEELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILGFF 180 Query: 181 AFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTIS 240 AFFQWEFSLTVLA +LAVLGYSVNESV+VFDRVRE FRDR++GK++ +V+NHAIT TIS Sbjct: 181 AFFQWEFSLTVLAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGTIS 240 Query: 241 RTIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDL 300 RT+ITHGST++MVLSM GGPTLHYFA+ALTIGI FGIYSSVFVAAA+AMWLGVKREDL Sbjct: 241 RTLITHGSTQLMVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDL 300 Query: 301 IKPAKPKDETDGAVV 315 IKP K KDE DGAVV Sbjct: 301 IKPIKEKDEHDGAVV 315 >ref|YP_004751424.1| preprotein translocase, auxillary membrane component (General Secretory pathway) [Collimonas fungivorans Ter331] gb|AEK60601.1| preprotein translocase, auxillary membrane component (General Secretory Pathway) [Collimonas fungivorans Ter331] Length = 302 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 253/302 (83%), Positives = 275/302 (91%) Query: 14 MRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAANIENIRKSVEGLG 73 MRHALIFN ISALTFVLAVFFL S+GLH SIEFTGGTV+EVAY K ANIE IRK+VEG+G Sbjct: 1 MRHALIFNAISALTFVLAVFFLFSKGLHLSIEFTGGTVIEVAYSKPANIEGIRKTVEGIG 60 Query: 74 FTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQRVEFVGPQVGDE 133 +TD QV +FGTAQDVMIRLPA+ G NS QS V+ AL+ QDPDVQL+R EFVGPQVGDE Sbjct: 61 YTDNQVTNFGTAQDVMIRLPAKKGENSNAQSATVLKALQQQDPDVQLKRTEFVGPQVGDE 120 Query: 134 LAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFAFFQWEFSLTVLA 193 LAHDGLMAL VVIGIVIYLA RFEWK+AVAA+IANLHDVVIILGFFAFFQWEFSLTVLA Sbjct: 121 LAHDGLMALLFVVIGIVIYLAIRFEWKYAVAAIIANLHDVVIILGFFAFFQWEFSLTVLA 180 Query: 194 AVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISRTIITHGSTEMMV 253 A+LAVLGYSVNESVVVFDRVRE FRDRR+GKL+ +V+NHAITSTISRTIITHGSTE+MV Sbjct: 181 AILAVLGYSVNESVVVFDRVRETFRDRRFGKLAVSDVMNHAITSTISRTIITHGSTEIMV 240 Query: 254 LSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLIKPAKPKDETDGA 313 LSM +FGGP LHYFA+ALTIGILFGIYSSVFVAAA+AMWLGVKRED+IKP K KDETDGA Sbjct: 241 LSMFVFGGPALHYFALALTIGILFGIYSSVFVAAAVAMWLGVKREDMIKPVKEKDETDGA 300 Query: 314 VV 315 VV Sbjct: 301 VV 302 >ref|ZP_08274054.1| Protein-export membrane protein SecF [Oxalobacteraceae bacterium IMCC9480] gb|EGF32480.1| Protein-export membrane protein SecF [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 246/314 (78%), Positives = 279/314 (88%), Gaps = 2/314 (0%) Query: 2 MEFFRIKKDIPFMRHALIFNVISALTFVLAVFFLLSRGLHFSIEFTGGTVMEVAYPKAAN 61 ME FRIKK IPFMRHALIFN ISALTFVLAVFFL GLHFSIEF GGT++EV+Y AN Sbjct: 1 MELFRIKKTIPFMRHALIFNAISALTFVLAVFFLFHNGLHFSIEFKGGTLIEVSYKTPAN 60 Query: 62 IENIRKSVEGLGFTDTQVQSFGTAQDVMIRLPAQHGVNSAQQSEKVISALKAQDPDVQLQ 121 IE +R++VE LG+TD QVQSFG A+DVMIRLP++ GVN+AQQS KV+ ALK +D DV+L+ Sbjct: 61 IEQVRQTVESLGYTDNQVQSFGKAEDVMIRLPSRPGVNTAQQSSKVLEALKLRDADVELR 120 Query: 122 RVEFVGPQVGDELAHDGLMALGMVVIGIVIYLAFRFEWKFAVAAVIANLHDVVIILGFFA 181 RVE+VGPQVG ELA +GL AL MV++GI+IYLA RFEWK+AV+A+IANLHDV+IILGFFA Sbjct: 121 RVEYVGPQVGAELAQNGLTALAMVIVGIMIYLAIRFEWKYAVSAIIANLHDVIIILGFFA 180 Query: 182 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVREAFRDRRYGKLSAPEVLNHAITSTISR 241 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDR+RE FR +R K S EV++ AITSTISR Sbjct: 181 FFQWEFSLTVLAAVLAVLGYSVNESVVVFDRIRENFRTQR--KTSVVEVIDSAITSTISR 238 Query: 242 TIITHGSTEMMVLSMLIFGGPTLHYFAVALTIGILFGIYSSVFVAAAIAMWLGVKREDLI 301 T+ITHGST+MMVLSML+FGGP+LHYFAVALTIGILFGIYSSVFVAAA+AMWLGVKREDLI Sbjct: 239 TVITHGSTQMMVLSMLLFGGPSLHYFAVALTIGILFGIYSSVFVAAAVAMWLGVKREDLI 298 Query: 302 KPAKPKDETDGAVV 315 KP K KDET GAVV Sbjct: 299 KPIKEKDETGGAVV 312