BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0025.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08274052.1| Preprotein translocase subunit YajC [Oxalobac...   167   7e-40
ref|YP_004751422.1| preprotein translocase subunit [Collimonas f...   164   5e-39
ref|YP_003774660.1| preprotein translocase transmembrane protein...   162   2e-38
ref|YP_001352042.1| preprotein translocase subunit YajC [Janthin...   162   2e-38
gb|AEG68091.1| protein translocase auxillary subunit [Ralstonia ...   159   2e-37

>ref|ZP_08274052.1| Preprotein translocase subunit YajC [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32478.1| Preprotein translocase subunit YajC [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 109

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 98/110 (89%), Gaps = 1/110 (0%)

Query: 1   VFITDAIAQTTAAGPGGLMGNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKAMMEALAKG 60
           +FIT+A AQ+   G G L  NLTSFLPIILMFVVLYFLMIRPQMKRQKEQK+MM+ALAKG
Sbjct: 1   MFITNAYAQSPLDGLG-LSSNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKSMMDALAKG 59

Query: 61  DEVVTSGGLLGKIVKVSDAYITVEVSEGNEVVVQKAAITTLLPKGTLKGL 110
           DEVVTSGG+LGK+ KV+DAY+T+EV++G EV+VQK A++TLLPKGT+K L
Sbjct: 60  DEVVTSGGILGKVTKVTDAYLTIEVADGTEVLVQKGAVSTLLPKGTIKSL 109


>ref|YP_004751422.1| preprotein translocase subunit [Collimonas fungivorans Ter331]
 gb|AEK60599.1| Preprotein translocase subunit [Collimonas fungivorans Ter331]
          Length = 117

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 78/95 (82%), Positives = 88/95 (92%)

Query: 14  GPGGLMGNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKAMMEALAKGDEVVTSGGLLGKI 73
           GP GL GNLTSFLPIILMFVVLYFLMIRPQMKRQKEQK+MMEALAKGDEVVT+GG+LGKI
Sbjct: 20  GPFGLSGNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKSMMEALAKGDEVVTAGGMLGKI 79

Query: 74  VKVSDAYITVEVSEGNEVVVQKAAITTLLPKGTLK 108
            KV+D YIT+E++ G EVVVQK ++TTLLPKGT+K
Sbjct: 80  TKVTDGYITLEIASGTEVVVQKGSVTTLLPKGTIK 114


>ref|YP_003774660.1| preprotein translocase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62752.1| preprotein translocase transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 110

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 101/110 (91%)

Query: 1   VFITDAIAQTTAAGPGGLMGNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKAMMEALAKG 60
           +FI+DA AQT AA PGG MGNL SFLPIILMFVVLYFLMIRPQMKRQKEQKAMM+ALAKG
Sbjct: 1   MFISDAYAQTAAAAPGGAMGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKG 60

Query: 61  DEVVTSGGLLGKIVKVSDAYITVEVSEGNEVVVQKAAITTLLPKGTLKGL 110
           DEVVTSGG+LG+I KV+D YIT+EVSEG E++VQK A+TTLLPKGT+KGL
Sbjct: 61  DEVVTSGGMLGRITKVADGYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 110


>ref|YP_001352042.1| preprotein translocase subunit YajC [Janthinobacterium sp.
           Marseille]
 gb|ABR89025.1| preprotein translocase subunit YajC [Janthinobacterium sp.
           Marseille]
          Length = 107

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 95/109 (87%), Gaps = 3/109 (2%)

Query: 2   FITDAIAQTTAAGPGGLMGNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKAMMEALAKGD 61
           FI++A A T A   GG++GNLT F+PIILMFVVLYFLMIRPQMKRQKE KAM+EA+ +GD
Sbjct: 2   FISNAYAATAA---GGVLGNLTQFVPIILMFVVLYFLMIRPQMKRQKEHKAMIEAVTRGD 58

Query: 62  EVVTSGGLLGKIVKVSDAYITVEVSEGNEVVVQKAAITTLLPKGTLKGL 110
           EVVTSGG+LGKI KVSD Y+++EV +G E+V+QK+A+TTLLPKGT+K L
Sbjct: 59  EVVTSGGVLGKITKVSDVYLSLEVQDGTEIVIQKSAVTTLLPKGTIKSL 107


>gb|AEG68091.1| protein translocase auxillary subunit [Ralstonia solanacearum Po82]
          Length = 113

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/110 (70%), Positives = 90/110 (81%)

Query: 1   VFITDAIAQTTAAGPGGLMGNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKAMMEALAKG 60
           + I+DA AQT    PGG    L SFLPIILMFVVL+F+MIRPQMKRQKE KAM+EALAKG
Sbjct: 4   LLISDAYAQTAGTAPGGAGNGLMSFLPIILMFVVLWFIMIRPQMKRQKETKAMLEALAKG 63

Query: 61  DEVVTSGGLLGKIVKVSDAYITVEVSEGNEVVVQKAAITTLLPKGTLKGL 110
           DEVVTSGG+LGK+ KV+D Y+TVEV+   E+ VQK A+TT+LPKGTLK L
Sbjct: 64  DEVVTSGGILGKVTKVADQYVTVEVAPNTELTVQKNAVTTVLPKGTLKSL 113