BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0022.p (384 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001100798.1| putative porin transmembrane protein [Hermin... 494 e-138 ref|YP_001898531.1| porin [Ralstonia pickettii 12J] >gi|18772493... 430 e-118 ref|YP_002980985.1| porin [Ralstonia pickettii 12D] >gi|30978120... 428 e-118 gb|AEG69578.1| outer membrane porin protein [Ralstonia solanacea... 427 e-117 ref|ZP_00946279.1| Outer membrane porin protein 32 precursor [Ra... 426 e-117 >ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL62677.1| Putative porin [Herminiimonas arsenicoxydans] Length = 392 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/375 (64%), Positives = 295/375 (78%) Query: 10 GASMQASAQSSVTIYGALDNALVYTTNQGGLHNLYLRTGNLAASKIGFKGAEDLGGGSQA 69 G A AQ+ VTIYG D A+VY++NQGG N Y+R+GNLA S+IGFKG EDLGGG+QA Sbjct: 18 GVLQNAGAQNGVTIYGIADVAMVYSSNQGGASNTYMRSGNLAGSRIGFKGTEDLGGGTQA 77 Query: 70 IFTLENGFDINTGAMSSANTLFNRQSFVGLTNSSYGTVTTGRQYTPYFLYVGAIGPTSVL 129 IF LE+GF+++TG MSS++TLFNRQ+FVG+ N+ YG +T GRQYTPY+L+VG IGPT+ L Sbjct: 78 IFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIGPTNSL 137 Query: 130 TGATGAHPGDVDGLDTTVRISNSVTYSSPVFGGAQVSALYGFGETAGSTSTGNTYSLAAK 189 TGATGAHPGD+DGLDTT+R +NS+TY+SPV+ G QVSAL GFGETAG +G T S A K Sbjct: 138 TGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISAAIK 197 Query: 190 YDVGAWNFALGYQRLKNGSGPANAWNSTASGSFSTSAVNNGYVSSDNVQMIAGAMRYTID 249 YD+ WNFALGYQRL N + P W+ AS +F+TS VNNGY+S+D+ Q +AGA RYT+ Sbjct: 198 YDINNWNFALGYQRLNNSNNPGGVWSPNASANFNTSPVNNGYLSADSAQYLAGAARYTMG 257 Query: 250 KWMFGANYANAQYKPGNGSLFTQKATFQTLGLITTYQLTPQVALAGGYSYTFEKSANGIS 309 K + GAN + +Y+P SLFTQKATF TLGL+T YQ+TP ++ GYSYT EK+ANGIS Sbjct: 258 KVIVGANASRVEYRPNGNSLFTQKATFDTLGLLTGYQMTPVFFVSVGYSYTKEKAANGIS 317 Query: 310 DAAKYHQVALEQTYSFSKRSAIYLLEAYQLARGKTLGKTAGSIVDAVAVVGDSQNGSPSS 369 D AKYHQ+ALEQTYSFSKR+AIY LEAYQ+A+G TLG V AVAVVGDSQNG+PS Sbjct: 318 DPAKYHQLALEQTYSFSKRTAIYFLEAYQVAKGNTLGLGGSGPVRAVAVVGDSQNGTPSD 377 Query: 370 GRNQTVLMVGFRHLF 384 G NQ V MVG RH F Sbjct: 378 GANQAVFMVGIRHSF 392 >ref|YP_001898531.1| porin [Ralstonia pickettii 12J] gb|ACD26099.1| porin Gram-negative type [Ralstonia pickettii 12J] Length = 411 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/383 (57%), Positives = 277/383 (72%), Gaps = 9/383 (2%) Query: 5 AIAAAGASMQASAQSSVTIYGALDNALVYTTNQGGLHNLYLRTGNLAASKIGFKGAEDLG 64 A+ AG SM ASAQSSVT+YG +DNA+ Y++NQGG N Y+ +G LAASK G G+EDLG Sbjct: 35 AVLCAGVSMHASAQSSVTLYGVVDNAIAYSSNQGGHSNTYMNSGALAASKFGLLGSEDLG 94 Query: 65 GGSQAIFTLENGFDINTGAMSSANTLFNRQSFVGLTNSSYGTVTTGRQYTPYFLYVGAIG 124 GG+ A+F LENGF +TGA S ANT+FNRQ++VGL N YG +T GRQYTPYF YV A+G Sbjct: 95 GGTTAVFRLENGFAADTGAQSKANTIFNRQAYVGLANKDYGQLTMGRQYTPYFQYVAALG 154 Query: 125 PTSVLTGATGAHPGDVDGLDTTVRISNSVTYSSPVFGGAQVSALYGFGETAGSTSTGNTY 184 PT+VLTGA GAHPGD+D +DTT+R+ NSVTY+SP FGG Q YG GE AGS S G+ + Sbjct: 155 PTNVLTGAVGAHPGDIDAMDTTLRVPNSVTYTSPTFGGLQAGLQYGMGEQAGSMSNGSAF 214 Query: 185 SLAAKYDVGAWNFALGYQRLKNGSGPANAWNSTASGSFSTSA-VNNGYVSSDNVQMIAGA 243 S A +YD A+ ++ GY RLKN N +G F+ +A +N GY ++D Q+I A Sbjct: 215 SAAMRYDYQAFAWSAGYVRLKNVPTFQN-----NTGDFANNAPINKGYATADTAQIIGTA 269 Query: 244 MRYTIDKWMFGANYANAQYKPGNGSL--FTQKATFQTLGLITTYQLTPQVALAGGYSYTF 301 RYT+ K M G NY+N QY+PG GS F Q A+F T G I TY LTP + L GYSYT Sbjct: 270 ARYTVGKLMMGLNYSNVQYRPGAGSPAGFAQTASFNTFGAIATYALTPALTLTAGYSYTA 329 Query: 302 EKSANGISDAAKYHQVALEQTYSFSKRSAIYLLEAYQLARGKTLGKTAGSIVDAVAVVGD 361 E NG+ +AA+YHQ+++EQ YSFSKR+A+Y +EAYQ A G+TL +AG +V+AVA VGD Sbjct: 330 ENKRNGVDNAARYHQISMEQLYSFSKRTALYFVEAYQKASGQTL-SSAGGVVNAVASVGD 388 Query: 362 SQNGSPSSGRNQTVLMVGFRHLF 384 SQNG+PS+GR+Q V MVG RH F Sbjct: 389 SQNGTPSNGRSQFVGMVGIRHSF 411 >ref|YP_002980985.1| porin [Ralstonia pickettii 12D] ref|ZP_07675945.1| outer membrane protein [Ralstonia sp. 5_7_47FAA] gb|ACS62313.1| porin Gram-negative type [Ralstonia pickettii 12D] gb|EFP65689.1| outer membrane protein [Ralstonia sp. 5_7_47FAA] Length = 402 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 225/384 (58%), Positives = 281/384 (73%), Gaps = 3/384 (0%) Query: 4 LAIAAAGASMQASAQSSVTIYGALDNALVYTTNQGGLHNLYLRTGNLAASKIGFKGAEDL 63 +A+ AGASMQA+AQ+SVT+YG +DNA Y++NQGG N Y+ +G L ASK G G EDL Sbjct: 19 VALLCAGASMQAAAQTSVTLYGVVDNAFAYSSNQGGHSNTYINSGALLASKFGLYGTEDL 78 Query: 64 GGGSQAIFTLENGFDINTGAMSSANTLFNRQSFVGLTNSSYGTVTTGRQYTPYFLYVGAI 123 GGG+ A+F LE+G + TG S A +FNRQ++VGL+N++YG VT GR YTPYF YV ++ Sbjct: 79 GGGNTALFRLESGLNAATGQQSQAGVIFNRQAYVGLSNTNYGQVTLGRAYTPYFQYVASL 138 Query: 124 GPTSVLTGATGAHPGDVDGLDTTVRISNSVTYSSPVFGGAQVSALYGFGETAGSTSTGNT 183 GPT+VLTGATGAHPGDVD LDTT+R +NSVTY++PV GG Q YGFGE AGS S G++ Sbjct: 139 GPTNVLTGATGAHPGDVDALDTTLRFNNSVTYTTPVLGGLQAGVQYGFGEQAGSISNGSS 198 Query: 184 YSLAAKYDVGAWNFALGYQRLKNGSGPANAWNSTASGSFS-TSAVNNGYVSSDNVQMIAG 242 S +YD A+++ +GY RLKN S A N + G+F+ S VN GY ++D+ Q+IA Sbjct: 199 VSTGLRYDFQAFSWGVGYTRLKNVSTGTTAGNFSNVGTFANNSPVNAGYATADSAQLIAT 258 Query: 243 AMRYTIDKWMFGANYANAQYKPGNGSLFTQKATFQTLGLITTYQLTPQVALAGGYSYTFE 302 A RYT K M G NY+N QYKPG SLFTQ ATF T+G I TY LTP + LA GYSYT E Sbjct: 259 AARYTFGKLMVGLNYSNVQYKPGALSLFTQSATFNTVGAIATYDLTPALRLAFGYSYTAE 318 Query: 303 KSANGISDAAKYHQVALEQTYSFSKRSAIYLLEAYQLARGKTLGK--TAGSIVDAVAVVG 360 K+ NGIS AKY+Q ++EQ YS SKR+A Y ++AYQ A G+TL T+ SIVDAVA VG Sbjct: 319 KARNGISSPAKYNQFSMEQLYSLSKRTAFYAIQAYQRANGQTLRASGTSTSIVDAVASVG 378 Query: 361 DSQNGSPSSGRNQTVLMVGFRHLF 384 DSQNG+PS+GR+Q V MVG RH F Sbjct: 379 DSQNGTPSNGRSQFVGMVGIRHSF 402 >gb|AEG69578.1| outer membrane porin protein [Ralstonia solanacearum Po82] Length = 394 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/384 (59%), Positives = 283/384 (73%), Gaps = 9/384 (2%) Query: 4 LAIAAAGASMQASAQSSVTIYGALDNALVYTTNQGGLHNLYLRTGNLAASKIGFKGAEDL 63 +A+ AG SMQA+AQSSVT+YG +D A+ Y++NQGG N Y+ GNL ASK G G EDL Sbjct: 17 VALLGAGVSMQAAAQSSVTLYGVVDTAMAYSSNQGGHSNTYMSQGNLLASKFGLYGTEDL 76 Query: 64 GGGSQAIFTLENGFDINTGAMSSANTLFNRQSFVGLTNSSYGTVTTGRQYTPYFLYVGAI 123 GGG+QA+F LE+GF+ TGA S+A +FNRQ+FVGL+N YGT++ GRQYTPYF YV A+ Sbjct: 77 GGGTQALFRLESGFNSATGAQSAAGYIFNRQAFVGLSNKDYGTLSAGRQYTPYFQYVAAL 136 Query: 124 GPTSVLTGATGAHPGDVDGLDTTVRISNSVTYSSPVFGGAQVSALYGFGETAGSTSTGNT 183 GPT+VLTGATGAHPGDVD LDTT+R +NS+TY+ P GG Q S YG GE GS S G++ Sbjct: 137 GPTNVLTGATGAHPGDVDALDTTLRFNNSLTYTLPKIGGLQASVQYGMGEQPGSISGGSS 196 Query: 184 YSLAAKYDVGAWNFALGYQRLKNGSGPANAWNSTASGSFSTSA-VNNGYVSSDNVQMIAG 242 +S A +YD A+ ++ GY LKN S S + G+F+ +A +N+GY S+D+ QMIA Sbjct: 197 FSGAVRYDYQAFAWSAGYIHLKNIS------TSNSIGTFANNAPINSGYASADSAQMIAT 250 Query: 243 AMRYTIDKWMFGANYANAQYKPGNGSLFTQKATFQTLGLITTYQLTPQVALAGGYSYTFE 302 A RYT DK M G NY+N QYKPG GSLFT+ A F T GLI TY LTP V +A GYSYT E Sbjct: 251 AARYTFDKLMVGLNYSNVQYKPGAGSLFTETAMFNTYGLIATYTLTPAVTVAAGYSYTAE 310 Query: 303 KSANGISDAAKYHQVALEQTYSFSKRSAIYLLEAYQLARGKTLGKTAG--SIVDAVAVVG 360 K+ NG+S AA+YHQ ++EQTY+ SKR+A Y LEAYQ A GKTL G +IVDAVA VG Sbjct: 311 KARNGVSSAARYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVSTIVDAVASVG 370 Query: 361 DSQNGSPSSGRNQTVLMVGFRHLF 384 DSQNG+PS+ +Q V MVG RHLF Sbjct: 371 DSQNGTPSNTGHQFVGMVGIRHLF 394 >ref|ZP_00946279.1| Outer membrane porin protein 32 precursor [Ralstonia solanacearum UW551] ref|YP_002259963.1| outer membrane porin protein [Ralstonia solanacearum IPO1609] gb|EAP71240.1| Outer membrane porin protein 32 precursor [Ralstonia solanacearum UW551] emb|CAQ61897.1| outer membrane porin protein [Ralstonia solanacearum IPO1609] Length = 394 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 229/384 (59%), Positives = 281/384 (73%), Gaps = 9/384 (2%) Query: 4 LAIAAAGASMQASAQSSVTIYGALDNALVYTTNQGGLHNLYLRTGNLAASKIGFKGAEDL 63 +A+ AG SMQA AQSSVT+YG +D A+ Y++NQGG N Y+ GNL ASK G G EDL Sbjct: 17 VALLGAGVSMQAVAQSSVTLYGVVDTAMAYSSNQGGHSNTYMSQGNLLASKFGLYGTEDL 76 Query: 64 GGGSQAIFTLENGFDINTGAMSSANTLFNRQSFVGLTNSSYGTVTTGRQYTPYFLYVGAI 123 GGG+QA+F LE+GF+ TGA S+A +FNRQ+FVGL+N YG +T GRQYTPYF YV A+ Sbjct: 77 GGGTQALFRLESGFNSATGAQSAAGYIFNRQAFVGLSNKDYGMLTAGRQYTPYFQYVAAL 136 Query: 124 GPTSVLTGATGAHPGDVDGLDTTVRISNSVTYSSPVFGGAQVSALYGFGETAGSTSTGNT 183 GPT+VLTGATGAHPGDVD LDTT+R +NS+TY+ P GG Q S YG GE GS S G++ Sbjct: 137 GPTNVLTGATGAHPGDVDALDTTLRFNNSLTYTLPKIGGLQASVQYGMGEQPGSISGGSS 196 Query: 184 YSLAAKYDVGAWNFALGYQRLKNGSGPANAWNSTASGSFSTSA-VNNGYVSSDNVQMIAG 242 +S A +YD A+ ++ GY LKN S S + G+F+ +A +N+GY S+D+ QMIA Sbjct: 197 FSGAVRYDYQAFAWSAGYIHLKNIS------TSNSIGTFANNAPINSGYASADSAQMIAT 250 Query: 243 AMRYTIDKWMFGANYANAQYKPGNGSLFTQKATFQTLGLITTYQLTPQVALAGGYSYTFE 302 A RYT DK M G NY+N QYKPG GSLFT+ A F T GLI TY LTP V +A GYSYT E Sbjct: 251 AARYTFDKLMVGLNYSNVQYKPGAGSLFTETAMFNTYGLIATYTLTPAVTVAAGYSYTAE 310 Query: 303 KSANGISDAAKYHQVALEQTYSFSKRSAIYLLEAYQLARGKTLGKTAG--SIVDAVAVVG 360 K+ NG+S AA+YHQ ++EQTY+ SKR+A Y LEAYQ A GKTL G +IVDAVA VG Sbjct: 311 KARNGVSSAARYHQFSMEQTYALSKRTAFYALEAYQKASGKTLRTVGGVSTIVDAVASVG 370 Query: 361 DSQNGSPSSGRNQTVLMVGFRHLF 384 DSQNG+PS+ +Q V MVG RHLF Sbjct: 371 DSQNGTPSNTGHQFVGMVGIRHLF 394