BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0003.0021.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_550769.1| GntR family transcriptional regulator [Polaromo...   177   4e-43
ref|YP_003609375.1| GntR family transcriptional regulator [Burkh...   161   3e-38
ref|YP_002944762.1| GntR family transcriptional regulator [Vario...   161   4e-38
ref|YP_372117.1| GntR family transcriptional regulator [Burkhold...   159   1e-37
gb|EGP45990.1| GntR family transcriptional regulator [Achromobac...   159   2e-37

>ref|YP_550769.1| GntR family transcriptional regulator [Polaromonas sp. JS666]
 gb|ABE45871.1| transcriptional regulator, GntR family [Polaromonas sp. JS666]
          Length = 245

 Score =  177 bits (450), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 111/135 (82%)

Query: 1   MRARWVIESEVAALAAQNRTDADIDRIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASG 60
           +RAR +IESE+A++AA+ R DAD+DRI+  LA M  + +DK+ANEA DR FH+ IAE++G
Sbjct: 111 LRARCLIESEIASVAAETRKDADLDRIFEALADMRLHMDDKVANEAADRRFHLYIAESTG 170

Query: 61  NSVMAQVVTALWDQLRGVLWKKLEEHFHTPQLREASLEEHQKVFDALVARDPVAARDAMR 120
           NSV+ Q+VTA+WD  +G +W K+++HFH+P LR +S E+HQ+VFDAL+ARDPVAAR AMR
Sbjct: 171 NSVLLQMVTAMWDHAKGPVWAKIDQHFHSPALRVSSQEDHQRVFDALMARDPVAARTAMR 230

Query: 121 EHLERVMNEFKKAWR 135
            HLERV+ EF +AWR
Sbjct: 231 AHLERVIKEFAQAWR 245


>ref|YP_003609375.1| GntR family transcriptional regulator [Burkholderia sp. CCGE1002]
 gb|ADG19864.1| GntR domain protein [Burkholderia sp. CCGE1002]
          Length = 242

 Score =  161 bits (407), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 81/136 (59%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 1   MRARWVIESEVAALAAQNRTDADIDRIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASG 60
           +RAR VIES +AALAA  R D+D+DR++A L AM  N +DK ANEA DR FH+ IA A+G
Sbjct: 107 LRARVVIESGIAALAATERKDSDLDRLFAALRAMRENMHDKAANEAADRDFHLAIARATG 166

Query: 61  NSVMAQVVTALWDQLRG-VLWKKLEEHFHTPQLREASLEEHQKVFDALVARDPVAARDAM 119
           N ++  VVTA+WD  R   LWKK+EEHFHTP+LR AS +EHQ++F A++ARD  AAR AM
Sbjct: 167 NEMLRLVVTAMWDNSRADPLWKKIEEHFHTPELRAASQDEHQRIFSAIMARDASAARTAM 226

Query: 120 REHLERVMNEFKKAWR 135
           + HL RV+ EF +AWR
Sbjct: 227 QAHLTRVIGEFTQAWR 242


>ref|YP_002944762.1| GntR family transcriptional regulator [Variovorax paradoxus S110]
 gb|ACS19496.1| GntR domain protein [Variovorax paradoxus S110]
          Length = 245

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 103/135 (76%)

Query: 1   MRARWVIESEVAALAAQNRTDADIDRIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASG 60
           +RAR +IESE+A+LAA  R DAD+D+++  LA M    +DK ANEA DR++H+ IAE++G
Sbjct: 111 LRARCLIESEIASLAATTRKDADLDKMFGALATMREQMHDKEANEAADRMYHLHIAESTG 170

Query: 61  NSVMAQVVTALWDQLRGVLWKKLEEHFHTPQLREASLEEHQKVFDALVARDPVAARDAMR 120
           NSV+ Q VT LWDQ +G +W ++E+HFH+P LR  S ++HQ++F A+V+ D  AAR AMR
Sbjct: 171 NSVLLQTVTNLWDQAKGPIWTQIEQHFHSPALRLQSQDDHQRIFAAIVSGDAEAARLAMR 230

Query: 121 EHLERVMNEFKKAWR 135
            HLERV+ EF ++WR
Sbjct: 231 AHLERVIGEFAQSWR 245


>ref|YP_372117.1| GntR family transcriptional regulator [Burkholderia sp. 383]
 gb|ABB11473.1| transcriptional regulator, GntR family [Burkholderia sp. 383]
          Length = 240

 Score =  159 bits (402), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 1   MRARWVIESEVAALAAQNRTDADIDRIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASG 60
           +RAR +IE+EVAALAA  R DAD+DR++  L  M    +DKLA +A DR FH+RIAE++G
Sbjct: 105 LRARGLIEAEVAALAATERKDADLDRLFFSLTTMREQMDDKLAYDAADRQFHLRIAESTG 164

Query: 61  NSVMAQVVTALWDQLRG-VLWKKLEEHFHTPQLREASLEEHQKVFDALVARDPVAARDAM 119
           N+V+  +VTA+WD  R   LW K+EEHFH+  LREAS E+HQ++F A++ARD  AAR+AM
Sbjct: 165 NTVLLHMVTAMWDCARSDPLWDKIEEHFHSTALREASQEDHQRIFAAIMARDATAAREAM 224

Query: 120 REHLERVMNEFKKAWR 135
           R HL RV+ EF +AWR
Sbjct: 225 RAHLSRVIAEFTQAWR 240


>gb|EGP45990.1| GntR family transcriptional regulator [Achromobacter xylosoxidans
           AXX-A]
          Length = 242

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 99/135 (73%)

Query: 1   MRARWVIESEVAALAAQNRTDADIDRIYAQLAAMGRNFNDKLANEADDRLFHIRIAEASG 60
           +RAR ++ESE+AALAA  R DAD+DRI+  L  M      K  N+  DR FH+ IA+++G
Sbjct: 108 LRARCLVESEIAALAASTRNDADLDRIFEALTTMREQMMHKEENQEADRRFHLYIAQSTG 167

Query: 61  NSVMAQVVTALWDQLRGVLWKKLEEHFHTPQLREASLEEHQKVFDALVARDPVAARDAMR 120
           NSV+   VTA+WDQ +G +W+K+E+HFHT +LR+AS E+HQ++F ALVARD   AR AMR
Sbjct: 168 NSVLLGTVTAMWDQAQGPIWEKIEQHFHTQELRQASQEDHQRIFSALVARDADGARQAMR 227

Query: 121 EHLERVMNEFKKAWR 135
            HLERV+ EF + WR
Sbjct: 228 NHLERVIGEFAQGWR 242