BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0003.0019.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06685604.1| starvation sensing protein [Achromobacter pie... 643 0.0 gb|EGP45997.1| bifunctional D-altronate/D-mannonate dehydratase ... 641 0.0 gb|EFV84862.1| mandelate racemase/muconate lactonizing enzyme do... 640 0.0 ref|YP_002944769.1| mandelate racemase/muconate lactonizing prot... 634 e-180 ref|YP_111485.1| mandelate racemase/muconate lactonizing enzyme ... 628 e-178 >ref|ZP_06685604.1| starvation sensing protein [Achromobacter piechaudii ATCC 43553] gb|EFF77450.1| starvation sensing protein [Achromobacter piechaudii ATCC 43553] Length = 403 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/403 (76%), Positives = 341/403 (84%), Gaps = 1/403 (0%) Query: 1 MKILSAKVIVTCPGRNFVTLKIETDQGIYGIGDATLNGRELAVKSYLEDHIIPCLIGRDA 60 MKI +A+VIV PGRNFVTLKIETDQG+ GIGDATLNGRELAV +YL +H+IPCLIGRDA Sbjct: 1 MKITNARVIVCSPGRNFVTLKIETDQGLTGIGDATLNGRELAVSAYLTEHVIPCLIGRDA 60 Query: 61 SRIEDTWQYLYRGGYWRCGPVTMTAIAAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVY 120 +IED WQYLY+G YWR GPVTMTAIAAVD ALWD+K KAA LP+YQLLGGKSR VMVY Sbjct: 61 HQIEDIWQYLYKGAYWRRGPVTMTAIAAVDTALWDLKAKAAGLPLYQLLGGKSRSGVMVY 120 Query: 121 GHANGRDHAEALDAVGHYIDMGYKAIRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEI 180 GHANG D +D V Y DMGY+AIR QSGVPGLDK YGVG+GN++YEPAD LP E Sbjct: 121 GHANGSDIEHTVDEVLRYADMGYRAIRAQSGVPGLDKVYGVGRGNLFYEPADADLPSEHD 180 Query: 181 WDTPLYLRHTPDLFEKVRVKYGSDHHLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATP 240 W T YLRHTP LFE+VR K G +HHLLHD HHRL PIEA +LGKSLE + LFWMEDATP Sbjct: 181 WSTEKYLRHTPQLFERVREKLGFEHHLLHDVHHRLTPIEAGRLGKSLEPYNLFWMEDATP 240 Query: 241 AENQEAFKLIRQHTTTPLAVGEIMSSIWDCKELIQNQLIDYIRTTVVHAGGITHLRRIAD 300 AENQ+AF+LIRQHTTTPLAVGEI +SIWDCK+L+QNQLIDYIRTTVVHAGGITHLRRIAD Sbjct: 241 AENQDAFRLIRQHTTTPLAVGEIFNSIWDCKDLVQNQLIDYIRTTVVHAGGITHLRRIAD 300 Query: 301 LASLYQVHTGCHGATDLSPVSMAAALNFNMWVPNFGIQEYMRHTPETDAVFPHGYYFDKG 360 LASLYQV TGCHGATDLSPV M AAL+F++WVPNFGIQEYMRHT ETDAVFPH Y FD+G Sbjct: 301 LASLYQVRTGCHGATDLSPVCMGAALHFDLWVPNFGIQEYMRHTEETDAVFPHAYTFDQG 360 Query: 361 YLVLPDAPGLGVDIDESAALKFPYERAYLPTCRL-RDGTVWNW 402 L D PG GVDIDE A K+PY+RAYLP RL +DGT+W+W Sbjct: 361 MLYPGDVPGHGVDIDEKLAAKYPYKRAYLPVNRLQQDGTLWSW 403 >gb|EGP45997.1| bifunctional D-altronate/D-mannonate dehydratase [Achromobacter xylosoxidans AXX-A] Length = 403 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/403 (75%), Positives = 340/403 (84%), Gaps = 1/403 (0%) Query: 1 MKILSAKVIVTCPGRNFVTLKIETDQGIYGIGDATLNGRELAVKSYLEDHIIPCLIGRDA 60 MKI +A+VIV PGRNFVTLKIETDQG+ GIGDATLNGRELAV +YL +H++PCLIGRDA Sbjct: 1 MKITNARVIVCSPGRNFVTLKIETDQGLTGIGDATLNGRELAVAAYLTEHVVPCLIGRDA 60 Query: 61 SRIEDTWQYLYRGGYWRCGPVTMTAIAAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVY 120 +IED WQYLY+G YWR GPVTMTAIAAVD ALWD+K KAA LP+YQLLGGKSR VMVY Sbjct: 61 HQIEDIWQYLYKGAYWRRGPVTMTAIAAVDTALWDLKAKAAGLPLYQLLGGKSRTGVMVY 120 Query: 121 GHANGRDHAEALDAVGHYIDMGYKAIRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEI 180 GHANG D +D V Y DMGY+AIR QSGVPGLDK YGVG+GN++YEPAD LP E Sbjct: 121 GHANGSDIEHTVDEVLRYADMGYRAIRAQSGVPGLDKVYGVGRGNLFYEPADADLPSEHD 180 Query: 181 WDTPLYLRHTPDLFEKVRVKYGSDHHLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATP 240 W T YL+HTP LFE++R K G +HHLLHD HHRL PIEA +LGKSLE + LFWMEDATP Sbjct: 181 WSTEKYLQHTPKLFERIREKLGFEHHLLHDVHHRLTPIEAGRLGKSLEPYNLFWMEDATP 240 Query: 241 AENQEAFKLIRQHTTTPLAVGEIMSSIWDCKELIQNQLIDYIRTTVVHAGGITHLRRIAD 300 AENQEAF+LIRQHTTTPLAVGEI +SIWDCK+L+QNQLIDYIRTTVVHAGGITHLRRIAD Sbjct: 241 AENQEAFRLIRQHTTTPLAVGEIFNSIWDCKDLVQNQLIDYIRTTVVHAGGITHLRRIAD 300 Query: 301 LASLYQVHTGCHGATDLSPVSMAAALNFNMWVPNFGIQEYMRHTPETDAVFPHGYYFDKG 360 LASLYQV TGCHGATDLSPV M AAL+F++WVPNFGIQEYMRHT ETDAVFPH Y F +G Sbjct: 301 LASLYQVRTGCHGATDLSPVCMGAALHFDLWVPNFGIQEYMRHTEETDAVFPHAYTFSQG 360 Query: 361 YLVLPDAPGLGVDIDESAALKFPYERAYLPTCRL-RDGTVWNW 402 L D PG GVDIDE A K+PY+RAYLP RL +DGT+WNW Sbjct: 361 MLYPGDVPGHGVDIDEKLAAKYPYKRAYLPVNRLQQDGTLWNW 403 >gb|EFV84862.1| mandelate racemase/muconate lactonizing enzyme domain-containing protein [Achromobacter xylosoxidans C54] Length = 403 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/403 (75%), Positives = 339/403 (84%), Gaps = 1/403 (0%) Query: 1 MKILSAKVIVTCPGRNFVTLKIETDQGIYGIGDATLNGRELAVKSYLEDHIIPCLIGRDA 60 MKI +A+VIV PGRNFVTLKIETDQG+ GIGDATLNGRELAV +YL +H++PCLIGRDA Sbjct: 1 MKITNARVIVCSPGRNFVTLKIETDQGLTGIGDATLNGRELAVAAYLTEHVVPCLIGRDA 60 Query: 61 SRIEDTWQYLYRGGYWRCGPVTMTAIAAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVY 120 +IED WQYLY+G YWR GPVTMTAIAAVD ALWD+K KAA LP+YQLLGGKSR VMVY Sbjct: 61 HQIEDIWQYLYKGAYWRRGPVTMTAIAAVDTALWDLKAKAAGLPLYQLLGGKSRTGVMVY 120 Query: 121 GHANGRDHAEALDAVGHYIDMGYKAIRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEI 180 GHANG D +D V Y DMGY+AIR QSGVPGLDK YGVG+GN++YEPAD LP E Sbjct: 121 GHANGSDIEHTVDEVLRYADMGYRAIRAQSGVPGLDKVYGVGRGNLFYEPADADLPSEHD 180 Query: 181 WDTPLYLRHTPDLFEKVRVKYGSDHHLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATP 240 W T YLRH P LFE++R K G +HHLLHD HHRL PIEA +LGKSLE + LFWMEDATP Sbjct: 181 WSTEKYLRHAPKLFERIREKLGFEHHLLHDVHHRLTPIEAGRLGKSLEPYNLFWMEDATP 240 Query: 241 AENQEAFKLIRQHTTTPLAVGEIMSSIWDCKELIQNQLIDYIRTTVVHAGGITHLRRIAD 300 AENQEAF+LIRQHTTTPLAVGEI +SIWDCK+L+QNQLIDYIRTTVVHAGGITHLRRIAD Sbjct: 241 AENQEAFRLIRQHTTTPLAVGEIFNSIWDCKDLVQNQLIDYIRTTVVHAGGITHLRRIAD 300 Query: 301 LASLYQVHTGCHGATDLSPVSMAAALNFNMWVPNFGIQEYMRHTPETDAVFPHGYYFDKG 360 LASLYQV TGCHGATDLSPV M AAL+F++WVPNFGIQEYMRHT ETDAVFPH Y F +G Sbjct: 301 LASLYQVRTGCHGATDLSPVCMGAALHFDLWVPNFGIQEYMRHTEETDAVFPHAYTFSQG 360 Query: 361 YLVLPDAPGLGVDIDESAALKFPYERAYLPTCRL-RDGTVWNW 402 L D PG GVDIDE A K+PY+RAYLP RL +DGT+WNW Sbjct: 361 MLYPGDVPGHGVDIDEKLAAKYPYKRAYLPVNRLQQDGTLWNW 403 >ref|YP_002944769.1| mandelate racemase/muconate lactonizing protein [Variovorax paradoxus S110] gb|ACS19503.1| Mandelate racemase/muconate lactonizing protein [Variovorax paradoxus S110] Length = 403 Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust. Identities = 303/403 (75%), Positives = 339/403 (84%), Gaps = 1/403 (0%) Query: 1 MKILSAKVIVTCPGRNFVTLKIETDQGIYGIGDATLNGRELAVKSYLEDHIIPCLIGRDA 60 MKI +A+VIV PGRNFVTLKIETD+G+ GIGDATLNGREL+V +YL +H+IPCLIGRDA Sbjct: 1 MKITNARVIVCSPGRNFVTLKIETDEGLTGIGDATLNGRELSVAAYLTEHVIPCLIGRDA 60 Query: 61 SRIEDTWQYLYRGGYWRCGPVTMTAIAAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVY 120 +IED WQYLY+G YWR GPVTMTAIAAVD ALWDIK KAA LP+YQLLGGKSR VMVY Sbjct: 61 HQIEDIWQYLYKGAYWRRGPVTMTAIAAVDTALWDIKAKAAGLPLYQLLGGKSRTGVMVY 120 Query: 121 GHANGRDHAEALDAVGHYIDMGYKAIRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEI 180 GHANG D +D V Y D GYKAIR QSGVPGL+K YGVGKG ++YEPAD LP E Sbjct: 121 GHANGSDIEHTVDEVLRYADAGYKAIRAQSGVPGLEKVYGVGKGTLFYEPADADLPSEHD 180 Query: 181 WDTPLYLRHTPDLFEKVRVKYGSDHHLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATP 240 W T YLRHTP LFE++R K G +HHLLHD HHRL PIEA +LGK+LE + LFWMEDATP Sbjct: 181 WSTEKYLRHTPKLFERIREKLGFEHHLLHDVHHRLTPIEAGRLGKALEPYSLFWMEDATP 240 Query: 241 AENQEAFKLIRQHTTTPLAVGEIMSSIWDCKELIQNQLIDYIRTTVVHAGGITHLRRIAD 300 AENQ+AF+LIRQHTTTPLAVGEI +SIWDCKELI+NQLIDY+R TVVHAGGITHLRRIAD Sbjct: 241 AENQDAFRLIRQHTTTPLAVGEIFNSIWDCKELIENQLIDYVRATVVHAGGITHLRRIAD 300 Query: 301 LASLYQVHTGCHGATDLSPVSMAAALNFNMWVPNFGIQEYMRHTPETDAVFPHGYYFDKG 360 LASLYQV TGCHGATDLSPV M AAL+F++WVPNFGIQEYMRHT ETDAVFPH Y FD+G Sbjct: 301 LASLYQVRTGCHGATDLSPVCMGAALHFDLWVPNFGIQEYMRHTEETDAVFPHAYTFDQG 360 Query: 361 YLVLPDAPGLGVDIDESAALKFPYERAYLPTCRLR-DGTVWNW 402 L D PG GV+IDE+ A K+PY+RAYLP RL+ DGT+WNW Sbjct: 361 MLYPGDVPGHGVEIDEALAAKYPYKRAYLPVNRLQHDGTLWNW 403 >ref|YP_111485.1| mandelate racemase/muconate lactonizing enzyme [Burkholderia pseudomallei K96243] ref|YP_335670.1| starvation sensing protein RspA [Burkholderia pseudomallei 1710b] ref|YP_001063091.1| starvation sensing protein RspA [Burkholderia pseudomallei 668] ref|YP_001076035.1| starvation sensing protein RspA [Burkholderia pseudomallei 1106a] ref|ZP_01768649.1| starvation sensing protein RspA [Burkholderia pseudomallei 305] ref|ZP_02407365.1| starvation sensing protein RspA [Burkholderia pseudomallei DM98] ref|ZP_02415882.1| starvation sensing protein RspA [Burkholderia pseudomallei 14] ref|ZP_02451957.1| starvation sensing protein RspA [Burkholderia pseudomallei 91] ref|ZP_02460121.1| starvation sensing protein RspA [Burkholderia pseudomallei 9] ref|ZP_02486119.1| starvation sensing protein RspA [Burkholderia pseudomallei 7894] ref|ZP_02502497.1| starvation sensing protein RspA [Burkholderia pseudomallei 112] ref|ZP_03456723.1| starvation sensing protein RspA [Burkholderia pseudomallei 576] ref|ZP_03791579.1| starvation sensing protein RspA [Burkholderia pseudomallei Pakistan 9] ref|ZP_04810894.1| starvation sensing protein RspA [Burkholderia pseudomallei 1106b] ref|ZP_04891825.1| starvation sensing protein RspA [Burkholderia pseudomallei 1655] ref|ZP_04893308.1| starvation sensing protein RspA [Burkholderia pseudomallei Pasteur 52237] ref|ZP_04900272.1| starvation sensing protein RspA [Burkholderia pseudomallei S13] ref|ZP_04953248.1| starvation sensing protein RspA [Burkholderia pseudomallei 1710a] ref|ZP_04968969.1| starvation sensing protein RspA [Burkholderia pseudomallei 406e] emb|CAH38950.1| putative mandelate racemase/muconate lactonizing enzyme [Burkholderia pseudomallei K96243] gb|ABA52000.1| starvation sensing protein RspA [Burkholderia pseudomallei 1710b] gb|ABN86072.1| starvation sensing protein RspA [Burkholderia pseudomallei 668] gb|ABN93238.1| starvation sensing protein RspA [Burkholderia pseudomallei 1106a] gb|EBA46560.1| starvation sensing protein RspA [Burkholderia pseudomallei 305] gb|EDO88261.1| starvation sensing protein RspA [Burkholderia pseudomallei 406e] gb|EDO90146.1| starvation sensing protein RspA [Burkholderia pseudomallei Pasteur 52237] gb|EDS83284.1| starvation sensing protein RspA [Burkholderia pseudomallei S13] gb|EDU12809.1| starvation sensing protein RspA [Burkholderia pseudomallei 1655] gb|EEC31860.1| starvation sensing protein RspA [Burkholderia pseudomallei 576] gb|EEH27887.1| starvation sensing protein RspA [Burkholderia pseudomallei Pakistan 9] gb|EES21519.1| starvation sensing protein RspA [Burkholderia pseudomallei 1106b] gb|EET02770.1| starvation sensing protein RspA [Burkholderia pseudomallei 1710a] Length = 402 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 296/402 (73%), Positives = 337/402 (83%) Query: 1 MKILSAKVIVTCPGRNFVTLKIETDQGIYGIGDATLNGRELAVKSYLEDHIIPCLIGRDA 60 MKI +IVTCPGRNFVT+KI TD+G++G+GDATLNGRELAV++YLEDH+ PCLIGRD Sbjct: 1 MKIERLNIIVTCPGRNFVTVKIVTDEGVHGLGDATLNGRELAVRAYLEDHVFPCLIGRDP 60 Query: 61 SRIEDTWQYLYRGGYWRCGPVTMTAIAAVDMALWDIKGKAANLPVYQLLGGKSRDAVMVY 120 IED WQYLYRG YWR GPVTMTAIAA+DMALWDIKGK A +PVYQLLGGKSR+ +MVY Sbjct: 61 RDIEDIWQYLYRGAYWRRGPVTMTAIAAIDMALWDIKGKLAGMPVYQLLGGKSREGLMVY 120 Query: 121 GHANGRDHAEALDAVGHYIDMGYKAIRVQSGVPGLDKAYGVGKGNMYYEPADKGLPDEEI 180 GHANGRDH EA+DA +I GY+AIRVQSGVPGL K YGVGK YEPA+KGLP EE Sbjct: 121 GHANGRDHDEAIDAAHRHIAAGYRAIRVQSGVPGLAKVYGVGKTAGAYEPAEKGLPPEEP 180 Query: 181 WDTPLYLRHTPDLFEKVRVKYGSDHHLLHDCHHRLKPIEAAQLGKSLEQFKLFWMEDATP 240 WDT LYLRHTP+LF KVR G HLLHD HHRL PIEAA+LG+ LE ++LFW+EDATP Sbjct: 181 WDTALYLRHTPELFRKVRDALGDAPHLLHDAHHRLTPIEAARLGRDLEPYRLFWLEDATP 240 Query: 241 AENQEAFKLIRQHTTTPLAVGEIMSSIWDCKELIQNQLIDYIRTTVVHAGGITHLRRIAD 300 AENQ+AF+LIR HTTTPLAVGE+ +SIWDCK+LI++QLIDYIR T+VHAGGITH+RRIAD Sbjct: 241 AENQDAFRLIRSHTTTPLAVGEVFNSIWDCKDLIRDQLIDYIRATIVHAGGITHVRRIAD 300 Query: 301 LASLYQVHTGCHGATDLSPVSMAAALNFNMWVPNFGIQEYMRHTPETDAVFPHGYYFDKG 360 A++YQV TG HGATDLSPV MAAA+NF +W PNFGIQE M HT TD VFPH Y FD G Sbjct: 301 YAAMYQVRTGFHGATDLSPVCMAAAVNFGLWAPNFGIQELMPHTALTDEVFPHNYRFDDG 360 Query: 361 YLVLPDAPGLGVDIDESAALKFPYERAYLPTCRLRDGTVWNW 402 YLV+ D PGLGVDIDE+ A +PYERAYLP RLRDG++WNW Sbjct: 361 YLVMDDVPGLGVDIDETLAANYPYERAYLPVARLRDGSMWNW 402